NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
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Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1ONAD-2D3RD
confEVID 1ONAD-2D3RD
pdbIDA 1ONA
pdbIDB 2D3R
pdbChainA D
pdbChainB D
identity 0.788999974727631
indelSize 1
alignment <alignment>
<seq1>ADTIVAVELDTYPNTDIGDPSYPHIGIDIKSVRSKKTAKWNMQNGKVGTAHIIYNSVDKRLSAVVSYPNADSATVSYDVDLDNVLPEWVRVGLSASTGLYKETNTILSWSFTSKLK------TNALHFMFNQFSKDQKDLILQGDATTGTDGNLELTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFEATFTFLIKSPDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN</seq1>
<seq2>ADTIVAVELDTYPNTDIGDPNYQHIGINIKSIRSKATTRWNVQDGKVGTAHISYNSVAKRLSAIVSYPGGSSATVSYDVDLNNILPEWVRVGLSASTGLYKETNTILSWSFTSKLKTNSTADAQSLHFTFNQFSQNPKDLILQGDASTDSDGNLQLTRVSN-GSPQSNSVGRALYYAPVHVWDKSAVVASFDATFTFLIKSTDSDIADGIAFFIANTDSSIPHGSGGRLLGLFPDAN</seq2>
<ss_1> EEEEEEEE EEEEE EEE EEEEEEEEEE EEEEEEEEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEEE ------ EEEEEEE EEEEEEE EEE EE EEEEEE EEEEEEEEEEEE EEEEEEEE GGG </ss_1>
<ss_2> EEEEEEEE EEEEEE EEEEE EEEEEEEEEE EEEEEEEE EEEEEEEEEE EEEEEEEEE EEEEEEEEEEEEE EEEEEEE EEE EEE EEE EEE - EEEEEE EEEEEEEEEEEE EEEEEEEE GGG </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2D3R</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>2D3RD</entryIDChain>
<sequence>TRVSN-GSPQS</sequence>
<secondary-structure> EEE - </secondary-structure>
<atom-coordinate>
<line>ATOM 6584 CA THR D 157 -17.782 38.244 56.052 1.00 35.94 C </line>
<line>ATOM 6591 CA ARG D 158 -19.762 41.461 56.649 1.00 38.99 C </line>
<line>ATOM 6602 CA VAL D 159 -17.940 44.579 57.852 1.00 40.85 C </line>
<line>ATOM 6609 CA SER D 160 -19.795 47.666 59.101 1.00 42.50 C </line>
<line>ATOM 6615 CA ASN D 161 -17.980 50.985 59.489 1.00 43.97 C </line>
<line>ATOM 6623 CA GLY D 162 -14.554 49.275 59.454 1.00 43.94 C </line>
<line>ATOM 6627 CA SER D 163 -15.735 46.753 62.057 1.00 43.57 C </line>
<line>ATOM 6633 CA PRO D 164 -16.398 42.969 61.567 1.00 42.21 C </line>
<line>ATOM 6640 CA GLN D 165 -19.866 41.539 62.498 1.00 40.51 C </line>
<line>ATOM 6649 CA SER D 166 -20.923 38.407 64.431 1.00 40.01 C </line>
</atom-coordinate>
<distance-map>
<line> SER GLN PRO SER GLY ASN SER VAL ARG THR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 8.95 7.53 7.39 10.61 11.99 13.20 10.11 6.59 3.82 </line>
<line>ARG CA 8.44 5.85 6.15 8.57 9.80 10.10 6.67 3.81 </line>
<line>VAL CA 9.50 5.88 4.33 5.22 6.01 6.61 3.81 </line>
<line>SER CA 10.74 7.01 6.30 5.10 5.49 3.80 </line>
<line>ASN CA 13.83 10.09 8.43 5.44 3.83 </line>
<line>GLY CA 13.54 9.87 6.90 3.81 </line>
<line>SER CA 10.11 6.67 3.87 </line>
<line>PRO CA 7.03 3.87 </line>
<line>GLN CA 3.83 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>THR CA 435</line>
<line>ARG CA 341</line>
<line>VAL CA 307</line>
<line>SER CA 208</line>
<line>ASN CA 142</line>
<line>GLY CA 214</line>
<line>SER CA 248</line>
<line>PRO CA 326</line>
<line>GLN CA 290</line>
<line>SER CA 288</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1ONA</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1ONAD</entryIDChain>
<sequence>TRVSSNGSPQG</sequence>
<secondary-structure> </secondary-structure>
<atom-coordinate>
<line>ATOM 6429 CA THR D 157 8.362 22.129 53.360 1.00 17.83 C </line>
<line>ATOM 6436 CA ARG D 158 6.660 25.139 54.986 1.00 26.91 C </line>
<line>ATOM 6447 CA VAL D 159 5.254 27.835 52.742 1.00 31.86 C </line>
<line>ATOM 6454 CA SER D 160 3.394 30.807 54.143 1.00 53.44 C </line>
<line>ATOM 6460 CA SER D 161 0.140 32.328 52.723 1.00 69.30 C </line>
<line>ATOM 6466 CA ASN D 162 2.060 34.897 50.602 1.00 69.05 C </line>
<line>ATOM 6474 CA GLY D 163 3.748 31.901 48.986 1.00 55.35 C </line>
<line>ATOM 6478 CA SER D 164 7.073 32.341 50.820 1.00 45.00 C </line>
<line>ATOM 6484 CA PRO D 165 9.178 29.417 51.992 1.00 30.03 C </line>
<line>ATOM 6491 CA GLN D 166 10.196 29.119 55.619 1.00 15.78 C </line>
<line>ATOM 6496 CA GLY D 167 13.653 28.143 56.771 1.00 10.00 C </line>
</atom-coordinate>
<distance-map>
<line> GLY GLN PRO SER GLY ASN SER SER VAL ARG THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 8.71 7.57 7.46 10.60 11.66 14.50 13.12 10.03 6.53 3.82 </line>
<line>ARG CA 7.82 5.36 5.80 8.33 9.50 11.64 9.97 6.60 3.78 </line>
<line>VAL CA 9.32 5.86 4.30 5.23 5.74 8.04 6.81 3.78 </line>
<line>SER CA 10.92 7.16 6.33 5.19 5.28 5.57 3.86 </line>
<line>SER CA 14.71 10.95 9.52 7.19 5.21 3.85 </line>
<line>ASN CA 14.77 11.17 9.09 5.63 3.80 </line>
<line>GLY CA 13.15 9.66 6.69 3.82 </line>
<line>SER CA 9.81 6.57 3.79 </line>
<line>PRO CA 6.67 3.78 </line>
<line>GLN CA 3.77 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>THR CA 445</line>
<line>ARG CA 355</line>
<line>VAL CA 309</line>
<line>SER CA 203</line>
<line>SER CA 136</line>
<line>ASN CA 121</line>
<line>GLY CA 221</line>
<line>SER CA 252</line>
<line>PRO CA 335</line>
<line>GLN CA 300</line>
<line>GLY CA 312</line>
</n14>
</entryChain>
<parallel>
<x>-22.9689998626709</x>
<y>16.253999710083008</y>
<z>6.559000015258789</z>
</parallel>
<rotation>
<x>0.19300000369548798</x>
<y>-0.7609999775886536</y>
<z>0.6190000176429749</z>
<x>0.006000000052154064</x>
<y>0.6320000290870667</y>
<z>0.7749999761581421</z>
<x>-0.9810000061988831</x>
<y>-0.14499999582767487</y>
<z>0.12600000202655792</z>
</rotation>
<rmsd>0.6503049731254578</rmsd>
<dmax>1.4329249858856201</dmax>
</indel>