NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1ONAD-2GDFA
confEVID 1ONAD-2GDFA
pdbIDA 1ONA
pdbIDB 2GDF
pdbChainA D
pdbChainB A
identity 0.81029999256134
indelSize 1
alignment <alignment>
<seq1>ADTIVAVELDTYPNTDIGDPSYPHIGIDIKSVRSKKTAKWNMQNGKVGTAHIIYNSVDKRLSAVVSYPNADSATVSYDVDLDNVLPEWVRVGLSASTGLYKETNTILSWSFTSKLKT-NALHFMFNQFSKDQKDLILQGDATTGTDGNLELTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFEATFTFLIKSPDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN</seq1>
<seq2>ADTIVAVELDSYPNTDIGDPNYPHIGIDIKSIRSKSTARWNMQTGKVGTVHISYNSVAKRLSAVVSYSGSSSTTVSYDVDLNNVLPEWVRVGLSATTGLYKETNTILSWSFTSKLKTENSLHFSFHKFSQNPKDLILQGDAFTDSDGNLELTKV------QGNSVGRALFYAPVHIWEKSAVVASFDATFTFLIKSPDREPADGITFFIANTDTSIPSGSGGRLLGLFPDAN</seq2>
<ss_1> EEEEEEEE EEEEE EEE EEEEEEEEEE EEEEEEEEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEEE -EEEEEEE EEEEEEE EEE EE EEEEEE EEEEEEEEEEEE EEEEEEEE GGG </ss_1>
<ss_2> EEEEEEEE EEEEE EEE EEEEEEEEEE EEEEEEEEE EEEEE EEEEEEEEEEE EEEEEEEEEEEEE EEEEE EEEEE EEE EEE ------ EEEEEE EEEEEEEEEEEE EEEEEEEEEE GGG </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1ONA</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1ONAD</entryIDChain>
<sequence>SKLKT-NALHF</sequence>
<secondary-structure>EE -EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 6136 CA SER D 113 7.720 -1.411 40.237 1.00 6.58 C </line>
<line>ATOM 6142 CA LYS D 114 7.806 -4.922 38.826 1.00 11.61 C </line>
<line>ATOM 6151 CA LEU D 115 9.125 -8.145 40.268 1.00 18.83 C </line>
<line>ATOM 6159 CA LYS D 116 9.285 -10.838 37.512 1.00 34.55 C </line>
<line>ATOM 6168 CA THR D 123 5.130 -11.209 37.457 1.00 49.50 C </line>
<line>ATOM 6175 CA ASN D 124 3.883 -8.773 40.209 1.00 36.99 C </line>
<line>ATOM 6183 CA ALA D 125 3.519 -5.030 39.744 1.00 18.21 C </line>
<line>ATOM 6188 CA LEU D 126 2.691 -1.776 41.442 1.00 2.57 C </line>
<line>ATOM 6196 CA HIS D 127 1.993 1.553 39.770 1.00 3.20 C </line>
<line>ATOM 6206 CA PHE D 128 0.631 4.877 40.994 1.00 3.60 C </line>
</atom-coordinate>
<distance-map>
<line> PHE HIS LEU ALA ASN THR LYS LEU LYS SER </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 9.51 6.47 5.18 5.57 8.30 10.51 9.94 6.88 3.78 </line>
<line>LYS CA 12.34 8.75 6.55 4.39 5.67 6.97 6.24 3.77 </line>
<line>LEU CA 15.56 12.05 9.13 6.43 5.28 5.77 3.86 </line>
<line>LYS CA 18.28 14.55 11.88 8.48 6.38 4.17 </line>
<line>THR CA 17.07 13.34 10.53 6.78 3.88 </line>
<line>ASN CA 14.05 10.51 7.20 3.79 </line>
<line>ALA CA 10.39 6.76 3.76 </line>
<line>LEU CA 6.98 3.79 </line>
<line>HIS CA 3.80 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>SER CA 386</line>
<line>LYS CA 314</line>
<line>LEU CA 289</line>
<line>LYS CA 203</line>
<line>THR CA 152</line>
<line>ASN CA 206</line>
<line>ALA CA 244</line>
<line>LEU CA 295</line>
<line>HIS CA 287</line>
<line>PHE CA 298</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2GDF</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2GDFA</entryIDChain>
<sequence>SKLKTENSLHF</sequence>
<secondary-structure>EEEE EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 859 CA SER A 113 20.531 0.745 2.302 1.00 30.14 C </line>
<line>ATOM 865 CA LYS A 114 17.128 -0.732 1.406 1.00 31.29 C </line>
<line>ATOM 874 CA LEU A 115 13.838 -0.487 3.193 1.00 33.34 C </line>
<line>ATOM 882 CA LYS A 116 10.914 -2.463 1.714 1.00 35.01 C </line>
<line>ATOM 891 CA THR A 117 7.210 -2.618 2.577 1.00 36.42 C </line>
<line>ATOM 898 CA GLU A 123 9.810 2.393 -0.413 1.00 40.72 C </line>
<line>ATOM 907 CA ASN A 124 13.336 3.695 0.390 1.00 36.78 C </line>
<line>ATOM 915 CA SER A 125 16.762 3.275 -1.119 1.00 33.76 C </line>
<line>ATOM 921 CA LEU A 126 20.081 4.997 -0.407 1.00 30.64 C </line>
<line>ATOM 929 CA HIS A 127 23.509 4.467 -2.003 1.00 27.85 C </line>
<line>ATOM 939 CA PHE A 128 26.770 6.389 -1.888 1.00 26.75 C </line>
</atom-coordinate>
<distance-map>
<line> PHE HIS LEU SER ASN GLU THR LYS LEU LYS SER </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 9.40 6.42 5.06 5.68 8.01 11.18 13.74 10.15 6.86 3.82 </line>
<line>LYS CA 12.43 8.91 6.70 4.75 5.92 8.16 10.16 6.46 3.75 </line>
<line>LEU CA 15.50 12.04 9.06 6.43 5.06 6.13 6.99 3.83 </line>
<line>LYS CA 18.51 14.85 12.01 8.67 6.75 5.42 3.81 </line>
<line>THR CA 21.99 18.35 15.25 11.82 9.06 6.39 </line>
<line>GLU CA 17.49 13.95 10.60 7.04 3.84 </line>
<line>ASN CA 13.89 10.48 6.92 3.77 </line>
<line>SER CA 10.51 6.91 3.81 </line>
<line>LEU CA 6.99 3.82 </line>
<line>HIS CA 3.79 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>SER CA 392</line>
<line>LYS CA 330</line>
<line>LEU CA 301</line>
<line>LYS CA 224</line>
<line>THR CA 171</line>
<line>GLU CA 181</line>
<line>ASN CA 241</line>
<line>SER CA 251</line>
<line>LEU CA 296</line>
<line>HIS CA 284</line>
<line>PHE CA 303</line>
</n14>
</entryChain>
<parallel>
<x>-8.829999923706055</x>
<y>-7.314000129699707</y>
<z>38.20500183105469</z>
</parallel>
<rotation>
<x>0.19099999964237213</x>
<y>0.9729999899864197</y>
<z>0.12700000405311584</z>
<x>-0.718999981880188</x>
<y>0.05000000074505806</y>
<z>0.6930000185966492</z>
<x>0.6679999828338623</x>
<y>-0.2240000069141388</y>
<z>0.7089999914169312</z>
</rotation>
<rmsd>1.8297159671783447</rmsd>
<dmax>4.417945861816406</dmax>
</indel>