NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1ONAD-2GDFC
confEVID 1ONAD-2GDFC
pdbIDA 1ONA
pdbIDB 2GDF
pdbChainA D
pdbChainB C
identity 0.81029999256134
indelSize 1
alignment <alignment>
<seq1>ADTIVAVELDTYPNTDIGDPSYPHIGIDIKSVRSKKTAKWNMQNGKVGTAHIIYNSVDKRLSAVVSYPNADSATVSYDVDLDNVLPEWVRVGLSASTGLYKETNTILSWSFTSKLKT-NALHFMFNQFSKDQKDLILQGDATTGTDGNLELTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFEATFTFLIKSPDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN</seq1>
<seq2>ADTIVAVELDSYPNTDIGDPNYPHIGIDIKSIRSKSTARWNMQTGKVGTVHISYNSVAKRLSAVVSYSGSSSTTVSYDVDLNNVLPEWVRVGLSATTGLYKETNTILSWSFTSKLKTENSLHFSFHKFSQNPKDLILQGDAFTDSDGNLELTKV------QGNSVGRALFYAPVHIWEKSAVVASFDATFTFLIKSPDREPADGITFFIANTDTSIPSGSGGRLLGLFPDAN</seq2>
<ss_1> EEEEEEEE EEEEE EEE EEEEEEEEEE EEEEEEEEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEEE -EEEEEEE EEEEEEE EEE EE EEEEEE EEEEEEEEEEEE EEEEEEEE GGG </ss_1>
<ss_2> EEEEEEEE EEEEE EEE EEEEEEEEEE EEEEEEEEE EEEEE EEEEEEEEE EEEEEEEEEEEEE EEEEEEE EEEEE EEE EEE ------ EEEEEE EEEEEEEEEEEE EEEEEEEEEE GGG </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1ONA</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1ONAD</entryIDChain>
<sequence>SKLKT-NALHF</sequence>
<secondary-structure>EE -EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 6136 CA SER D 113 7.720 -1.411 40.237 1.00 6.58 C </line>
<line>ATOM 6142 CA LYS D 114 7.806 -4.922 38.826 1.00 11.61 C </line>
<line>ATOM 6151 CA LEU D 115 9.125 -8.145 40.268 1.00 18.83 C </line>
<line>ATOM 6159 CA LYS D 116 9.285 -10.838 37.512 1.00 34.55 C </line>
<line>ATOM 6168 CA THR D 123 5.130 -11.209 37.457 1.00 49.50 C </line>
<line>ATOM 6175 CA ASN D 124 3.883 -8.773 40.209 1.00 36.99 C </line>
<line>ATOM 6183 CA ALA D 125 3.519 -5.030 39.744 1.00 18.21 C </line>
<line>ATOM 6188 CA LEU D 126 2.691 -1.776 41.442 1.00 2.57 C </line>
<line>ATOM 6196 CA HIS D 127 1.993 1.553 39.770 1.00 3.20 C </line>
<line>ATOM 6206 CA PHE D 128 0.631 4.877 40.994 1.00 3.60 C </line>
</atom-coordinate>
<distance-map>
<line> PHE HIS LEU ALA ASN THR LYS LEU LYS SER </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 9.51 6.47 5.18 5.57 8.30 10.51 9.94 6.88 3.78 </line>
<line>LYS CA 12.34 8.75 6.55 4.39 5.67 6.97 6.24 3.77 </line>
<line>LEU CA 15.56 12.05 9.13 6.43 5.28 5.77 3.86 </line>
<line>LYS CA 18.28 14.55 11.88 8.48 6.38 4.17 </line>
<line>THR CA 17.07 13.34 10.53 6.78 3.88 </line>
<line>ASN CA 14.05 10.51 7.20 3.79 </line>
<line>ALA CA 10.39 6.76 3.76 </line>
<line>LEU CA 6.98 3.79 </line>
<line>HIS CA 3.80 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>SER CA 386</line>
<line>LYS CA 314</line>
<line>LEU CA 289</line>
<line>LYS CA 203</line>
<line>THR CA 152</line>
<line>ASN CA 206</line>
<line>ALA CA 244</line>
<line>LEU CA 295</line>
<line>HIS CA 287</line>
<line>PHE CA 298</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2GDF</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>2GDFC</entryIDChain>
<sequence>SKLKTENSLHF</sequence>
<secondary-structure>EEEE EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 4401 CA SER C 113 20.505 -0.723 -20.225 1.00 28.87 C </line>
<line>ATOM 4407 CA LYS C 114 17.081 0.711 -19.334 1.00 30.16 C </line>
<line>ATOM 4416 CA LEU C 115 13.803 0.520 -21.148 1.00 31.62 C </line>
<line>ATOM 4424 CA LYS C 116 10.847 2.442 -19.681 1.00 32.74 C </line>
<line>ATOM 4433 CA THR C 117 7.176 2.674 -20.518 1.00 34.25 C </line>
<line>ATOM 4440 CA GLU C 123 9.707 -2.351 -17.563 1.00 41.06 C </line>
<line>ATOM 4449 CA ASN C 124 13.260 -3.610 -18.354 1.00 37.62 C </line>
<line>ATOM 4457 CA SER C 125 16.694 -3.294 -16.828 1.00 33.89 C </line>
<line>ATOM 4463 CA LEU C 126 20.026 -5.037 -17.561 1.00 30.32 C </line>
<line>ATOM 4471 CA HIS C 127 23.459 -4.480 -15.963 1.00 28.16 C </line>
<line>ATOM 4481 CA PHE C 128 26.724 -6.371 -16.003 1.00 27.42 C </line>
</atom-coordinate>
<distance-map>
<line> PHE HIS LEU SER ASN GLU THR LYS LEU LYS SER </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 9.40 6.40 5.09 5.72 8.02 11.24 13.76 10.18 6.88 3.82 </line>
<line>LYS CA 12.42 8.89 6.70 4.74 5.85 8.18 10.17 6.48 3.75 </line>
<line>LEU CA 15.52 12.05 9.08 6.45 5.02 6.15 7.00 3.82 </line>
<line>LYS CA 18.53 14.86 12.03 8.67 6.65 5.36 3.77 </line>
<line>THR CA 22.01 18.36 15.28 11.82 9.01 6.36 </line>
<line>GLU CA 17.55 14.01 10.66 7.09 3.85 </line>
<line>ASN CA 13.94 10.51 6.96 3.77 </line>
<line>SER CA 10.52 6.92 3.83 </line>
<line>LEU CA 7.01 3.83 </line>
<line>HIS CA 3.77 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>SER CA 391</line>
<line>LYS CA 333</line>
<line>LEU CA 301</line>
<line>LYS CA 225</line>
<line>THR CA 170</line>
<line>GLU CA 180</line>
<line>ASN CA 243</line>
<line>SER CA 250</line>
<line>LEU CA 297</line>
<line>HIS CA 282</line>
<line>PHE CA 304</line>
</n14>
</entryChain>
<parallel>
<x>-8.779000282287598</x>
<y>-5.7230000495910645</y>
<z>58.667999267578125</z>
</parallel>
<rotation>
<x>0.19499999284744263</x>
<y>0.9729999899864197</y>
<z>0.12600000202655792</z>
<x>0.7210000157356262</x>
<y>-0.054999999701976776</y>
<z>-0.6909999847412109</z>
<x>-0.6650000214576721</x>
<y>0.22599999606609344</y>
<z>-0.7120000123977661</z>
</rotation>
<rmsd>1.8256340026855469</rmsd>
<dmax>4.41632604598999</dmax>
</indel>