NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1P9UF-1UK2A
confEVID 1P9UF-1UK2A
pdbIDA 1P9U
pdbIDB 1UK2
pdbChainA F
pdbChainB A
identity 0.437099993228912
indelSize 3
alignment <alignment>
<seq1>SGLRKMAQPSGLVEPCIVRVSYGNNVLNGLWLGDEVICPRHVIAS-DTTRVINYENEMSSVRLHNFSVSKNNVFLGVVSARYKGVNLVLKVNQVNPNTPEHKFKSIKAGESFNILACYEGCPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGILYFVYMHHLELGNGSHVGSNFEGEMYGGYEDQPSMQLEGTNVMSSDNVVAFLYAALINGERWFVTNTSMSLESYNTWAKTNSFTELSS--TDAFSMLAAKTGQSVEKLLDSIVRLNK-GFGGRTILSYGSLCDEFTPTEVIRQMYGVN</seq1>
<seq2>SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSG--</seq2>
<ss_1> GGEEEEEEE EEEEEEEEEEEEEEEEGGG - HHHHHH GGG EEEE EEE EEEEEEEEEEEE EEEEEEE EEEEEEE EEEEEEE EEEEEEEEEEEE EEEEE GGG HHHHHHHHHHHH HHHHHHHH -- HHHHHH HHHHHHHHHHH - GGG HHHHHHHHH </ss_1>
<ss_2> HHHGGEEEEEEE EEEEEEEEEEEEEEEEGGG GGG HHHHHH GGEEEEEE EEEEEEEEEEEE EEE EEEEEEE EEEEEEE EEEEEEE EEEEEEEEEEEE EEEEE HHHHHHHHHHHHH HHHHHHHHHH HHHHHH HHHH HHHHHHHHHHHHHH HHHGGG --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1P9U</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>1P9UF</entryIDChain>
<sequence>HVIAS-DTTRV</sequence>
<secondary-structure>GGG - </secondary-structure>
<atom-coordinate>
<line>ATOM 11826 CA HIS F 41 31.799 102.044 61.363 1.00 31.51 C </line>
<line>ATOM 11836 CA VAL F 42 28.501 103.116 59.778 1.00 32.77 C </line>
<line>ATOM 11843 CA ILE F 43 30.644 105.601 57.837 1.00 38.40 C </line>
<line>ATOM 11851 CA ALA F 44 33.050 102.899 56.631 1.00 39.72 C </line>
<line>ATOM 11856 CA SER F 45 33.030 102.304 52.870 1.00 43.85 C </line>
<line>ATOM 11862 CA ASP F 46 33.970 98.631 53.315 1.00 44.16 C </line>
<line>ATOM 11870 CA THR F 47 33.345 97.041 56.691 1.00 44.38 C </line>
<line>ATOM 11877 CA THR F 48 34.954 93.774 55.515 1.00 44.94 C </line>
<line>ATOM 11884 CA ARG F 49 38.520 95.078 55.092 1.00 45.95 C </line>
<line>ATOM 11895 CA VAL F 50 40.792 97.074 57.402 1.00 41.22 C </line>
</atom-coordinate>
<distance-map>
<line> VAL ARG THR THR ASP SER ALA ILE VAL HIS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>HIS CA 11.01 11.53 10.61 7.02 9.01 8.59 4.97 5.14 3.81 </line>
<line>VAL CA 13.90 13.67 12.13 8.36 9.58 8.30 5.54 3.81 </line>
<line>ILE CA 13.26 13.43 12.80 9.05 8.95 6.42 3.81 </line>
<line>ALA CA 9.72 9.67 9.39 5.87 5.48 3.81 </line>
<line>SER CA 10.40 9.34 9.14 6.51 3.82 </line>
<line>ASP CA 8.10 6.04 5.42 3.78 </line>
<line>THR CA 7.48 5.76 3.83 </line>
<line>THR CA 6.97 3.82 </line>
<line>ARG CA 3.81 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>HIS CA 470</line>
<line>VAL CA 486</line>
<line>ILE CA 428</line>
<line>ALA CA 360</line>
<line>SER CA 279</line>
<line>ASP CA 222</line>
<line>THR CA 289</line>
<line>THR CA 201</line>
<line>ARG CA 179</line>
<line>VAL CA 202</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1UK2</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1UK2A</entryIDChain>
<sequence>HVICTAEDMLN</sequence>
<secondary-structure>GGG GGG </secondary-structure>
<atom-coordinate>
<line>ATOM 304 CA HIS A 41 96.580 15.614 8.275 1.00 26.18 C </line>
<line>ATOM 314 CA VAL A 42 93.838 17.538 10.036 1.00 31.56 C </line>
<line>ATOM 321 CA ILE A 43 95.550 20.644 8.535 1.00 40.37 C </line>
<line>ATOM 329 CA CYS A 44 95.249 19.078 5.056 1.00 58.86 C </line>
<line>ATOM 335 CA THR A 45 92.350 19.837 2.749 1.00 76.59 C </line>
<line>ATOM 342 CA ALA A 46 90.756 16.558 1.304 1.00 83.89 C </line>
<line>ATOM 347 CA GLU A 47 92.584 18.024 -1.778 1.00 87.03 C </line>
<line>ATOM 356 CA ASP A 48 96.219 17.991 -0.559 1.00 82.07 C </line>
<line>ATOM 364 CA MET A 49 95.694 14.413 0.786 1.00 79.23 C </line>
<line>ATOM 372 CA LEU A 50 97.135 13.080 -2.475 1.00 76.48 C </line>
<line>ATOM 380 CA ASN A 51 100.756 14.217 -1.490 1.00 60.81 C </line>
</atom-coordinate>
<distance-map>
<line> ASN LEU MET ASP GLU ALA THR CYS ILE VAL HIS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>HIS CA 10.71 11.06 7.64 9.16 11.08 9.13 8.14 4.91 5.14 3.78 </line>
<line>VAL CA 13.85 13.68 9.94 10.87 11.89 9.31 7.78 5.40 3.85 </line>
<line>ILE CA 13.00 13.45 9.94 9.50 11.05 9.59 6.66 3.83 </line>
<line>CYS CA 9.84 9.81 6.34 5.80 7.41 6.37 3.78 </line>
<line>THR CA 10.96 9.79 6.67 5.41 4.88 3.92 </line>
<line>ALA CA 10.64 8.19 5.41 5.95 3.87 </line>
<line>GLU CA 9.02 6.76 5.41 3.83 </line>
<line>ASP CA 5.97 5.35 3.86 </line>
<line>MET CA 5.55 3.81 </line>
<line>LEU CA 3.92 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>HIS CA 476</line>
<line>VAL CA 487</line>
<line>ILE CA 407</line>
<line>CYS CA 357</line>
<line>THR CA 265</line>
<line>ALA CA 231</line>
<line>GLU CA 173</line>
<line>ASP CA 227</line>
<line>MET CA 273</line>
<line>LEU CA 203</line>
<line>ASN CA 221</line>
</n14>
</entryChain>
<parallel>
<x>-62.34600067138672</x>
<y>82.78399658203125</y>
<z>52.61199951171875</z>
</parallel>
<rotation>
<x>0.7310000061988831</x>
<y>0.009999999776482582</y>
<z>0.6819999814033508</z>
<x>0.40299999713897705</x>
<y>0.800000011920929</y>
<z>-0.4440000057220459</z>
<x>-0.550000011920929</x>
<y>0.5989999771118164</y>
<z>0.5809999704360962</z>
</rotation>
<rmsd>1.9869489669799805</rmsd>
<dmax>3.3763070106506348</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1P9U</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>1P9UF</entryIDChain>
<sequence>TELSS--TDAFS</sequence>
<secondary-structure> -- H</secondary-structure>
<atom-coordinate>
<line>ATOM 13358 CA THR F 239 36.586 85.486 90.632 1.00 63.72 C </line>
<line>ATOM 13365 CA GLU F 240 37.364 85.917 94.331 1.00 70.45 C </line>
<line>ATOM 13374 CA LEU F 241 34.295 86.049 96.579 1.00 73.72 C </line>
<line>ATOM 13382 CA SER F 242 34.888 89.314 98.478 1.00 80.07 C </line>
<line>ATOM 13388 CA SER F 243 32.353 88.552 101.224 1.00 82.87 C </line>
<line>ATOM 13394 CA THR F 244 29.316 86.415 102.079 1.00 83.83 C </line>
<line>ATOM 13401 CA ASP F 245 27.185 88.967 103.904 1.00 84.91 C </line>
<line>ATOM 13409 CA ALA F 246 25.788 89.671 100.448 1.00 80.06 C </line>
<line>ATOM 13414 CA PHE F 247 23.732 86.481 100.675 1.00 75.00 C </line>
<line>ATOM 13425 CA SER F 248 22.316 86.913 104.178 1.00 76.36 C </line>
</atom-coordinate>
<distance-map>
<line> SER PHE ALA ASP THR SER SER LEU GLU THR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 19.73 16.34 15.18 16.63 13.59 11.81 8.89 6.40 3.80 </line>
<line>GLU CA 18.01 15.05 13.62 14.30 11.18 8.92 5.90 3.81 </line>
<line>LEU CA 14.21 11.34 10.02 10.62 7.43 5.62 3.82 </line>
<line>SER CA 14.01 11.72 9.32 9.43 7.24 3.81 </line>
<line>SER CA 10.59 8.88 6.70 5.84 3.81 </line>
<line>THR CA 7.32 5.76 5.07 3.79 </line>
<line>ASP CA 5.29 5.34 3.79 </line>
<line>ALA CA 5.79 3.80 </line>
<line>PHE CA 3.80 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>THR CA 344</line>
<line>GLU CA 300</line>
<line>LEU CA 350</line>
<line>SER CA 239</line>
<line>SER CA 242</line>
<line>THR CA 292</line>
<line>ASP CA 201</line>
<line>ALA CA 275</line>
<line>PHE CA 334</line>
<line>SER CA 241</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1UK2</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1UK2A</entryIDChain>
<sequence>EPLTQDHVDILG</sequence>
<secondary-structure> HHHHHH H</secondary-structure>
<atom-coordinate>
<line>ATOM 1869 CA GLU A 240 101.927 -17.326 10.724 1.00 17.88 C </line>
<line>ATOM 1878 CA PRO A 241 104.974 -19.520 11.499 1.00 18.06 C </line>
<line>ATOM 1885 CA LEU A 242 105.463 -20.018 15.206 1.00 16.30 C </line>
<line>ATOM 1893 CA THR A 243 108.963 -18.668 16.229 1.00 19.28 C </line>
<line>ATOM 1900 CA GLN A 244 110.915 -19.918 19.283 1.00 19.18 C </line>
<line>ATOM 1909 CA ASP A 245 110.169 -16.493 20.864 1.00 19.77 C </line>
<line>ATOM 1917 CA HIS A 246 106.380 -17.350 20.604 1.00 16.62 C </line>
<line>ATOM 1927 CA VAL A 247 106.800 -20.827 22.026 1.00 16.12 C </line>
<line>ATOM 1934 CA ASP A 248 108.399 -19.100 25.074 1.00 18.54 C </line>
<line>ATOM 1942 CA ILE A 249 105.442 -16.711 25.433 1.00 16.17 C </line>
<line>ATOM 1950 CA LEU A 250 103.111 -19.746 25.706 1.00 17.65 C </line>
<line>ATOM 1958 CA GLY A 251 105.198 -21.004 28.671 1.00 13.55 C </line>
</atom-coordinate>
<distance-map>
<line> GLY LEU ILE ASP VAL HIS ASP GLN THR LEU PRO GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 18.61 15.22 15.14 15.84 12.80 10.84 13.09 12.68 9.03 6.31 3.83 </line>
<line>PRO CA 17.24 14.33 14.22 14.01 10.76 9.47 11.13 9.80 6.25 3.77 </line>
<line>LEU CA 13.50 10.76 10.75 10.34 7.00 6.09 8.16 6.81 3.89 </line>
<line>THR CA 13.21 11.19 10.05 8.87 6.55 5.25 5.26 3.83 </line>
<line>GLN CA 11.05 10.11 8.84 6.37 5.03 5.38 3.85 </line>
<line>ASP CA 10.30 9.16 6.58 5.26 5.61 3.89 </line>
<line>HIS CA 8.93 6.52 4.96 5.21 3.78 </line>
<line>VAL CA 6.84 5.32 5.51 3.85 </line>
<line>ASP CA 5.18 5.36 3.82 </line>
<line>ILE CA 5.38 3.84 </line>
<line>LEU CA 3.84 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>GLU CA 360</line>
<line>PRO CA 338</line>
<line>LEU CA 372</line>
<line>THR CA 255</line>
<line>GLN CA 201</line>
<line>ASP CA 200</line>
<line>HIS CA 315</line>
<line>VAL CA 311</line>
<line>ASP CA 222</line>
<line>ILE CA 296</line>
<line>LEU CA 360</line>
<line>GLY CA 270</line>
</n14>
</entryChain>
<parallel>
<x>-74.38899993896484</x>
<y>106.55699920654297</y>
<z>80.2750015258789</z>
</parallel>
<rotation>
<x>0.46399998664855957</x>
<y>0.5630000233650208</y>
<z>0.6830000281333923</z>
<x>-0.2370000034570694</x>
<y>0.8230000138282776</y>
<z>-0.5170000195503235</z>
<x>-0.8529999852180481</x>
<y>0.07800000160932541</y>
<z>0.5149999856948853</z>
</rotation>
<rmsd>0.8504509925842285</rmsd>
<dmax>1.8320380449295044</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1P9U</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>1P9UF</entryIDChain>
<sequence>VRLNK-GFGGR</sequence>
<secondary-structure>HHH - </secondary-structure>
<atom-coordinate>
<line>ATOM 13546 CA VAL F 266 33.960 73.292 93.223 1.00 77.51 C </line>
<line>ATOM 13553 CA ARG F 267 32.439 69.825 92.887 1.00 79.82 C </line>
<line>ATOM 13564 CA LEU F 268 29.987 70.949 90.197 1.00 76.42 C </line>
<line>ATOM 13572 CA ASN F 269 32.630 72.642 88.053 1.00 75.91 C </line>
<line>ATOM 13580 CA LYS F 270 34.016 69.149 87.462 1.00 76.30 C </line>
<line>ATOM 13589 CA GLY F 271 30.807 67.661 86.079 1.00 70.75 C </line>
<line>ATOM 13593 CA PHE F 272 27.039 67.527 86.609 1.00 68.03 C </line>
<line>ATOM 13604 CA GLY F 273 27.007 63.784 86.021 1.00 67.37 C </line>
<line>ATOM 13608 CA GLY F 274 24.154 64.048 83.545 1.00 66.59 C </line>
<line>ATOM 13612 CA ARG F 275 22.191 66.193 85.992 1.00 67.15 C </line>
</atom-coordinate>
<distance-map>
<line> ARG GLY GLY PHE GLY LYS ASN LEU ARG VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 15.53 16.59 13.81 11.17 9.63 7.10 5.38 5.52 3.80 </line>
<line>ARG CA 12.87 13.76 10.64 8.59 7.33 5.69 5.60 3.81 </line>
<line>LEU CA 10.05 11.22 8.81 5.77 5.33 5.19 3.80 </line>
<line>ASN CA 12.44 12.88 10.69 7.71 5.66 3.80 </line>
<line>LYS CA 12.28 11.77 8.94 7.21 3.80 </line>
<line>GLY CA 8.74 7.98 5.43 3.81 </line>
<line>PHE CA 5.07 5.46 3.79 </line>
<line>GLY CA 5.38 3.79 </line>
<line>GLY CA 3.80 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>VAL CA 376</line>
<line>ARG CA 310</line>
<line>LEU CA 354</line>
<line>ASN CA 328</line>
<line>LYS CA 211</line>
<line>GLY CA 202</line>
<line>PHE CA 236</line>
<line>GLY CA 156</line>
<line>GLY CA 137</line>
<line>ARG CA 197</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1UK2</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1UK2A</entryIDChain>
<sequence>KELLQNGMNGR</sequence>
<secondary-structure>HHHHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 2076 CA LYS A 269 97.757 -29.033 13.311 1.00 25.31 C </line>
<line>ATOM 2085 CA GLU A 270 95.093 -31.807 13.462 1.00 30.37 C </line>
<line>ATOM 2094 CA LEU A 271 92.238 -29.159 13.558 1.00 27.01 C </line>
<line>ATOM 2102 CA LEU A 272 93.584 -27.421 10.465 1.00 31.23 C </line>
<line>ATOM 2110 CA GLN A 273 93.893 -30.715 8.471 1.00 35.41 C </line>
<line>ATOM 2119 CA ASN A 274 90.659 -32.311 9.671 1.00 39.05 C </line>
<line>ATOM 2127 CA GLY A 275 88.351 -29.474 10.530 1.00 33.98 C </line>
<line>ATOM 2131 CA MET A 276 86.091 -29.220 13.537 1.00 45.87 C </line>
<line>ATOM 2139 CA ASN A 277 83.377 -31.094 11.823 1.00 53.95 C </line>
<line>ATOM 2147 CA GLY A 278 80.323 -29.507 13.300 1.00 52.92 C </line>
<line>ATOM 2151 CA ARG A 279 81.761 -29.405 16.787 1.00 46.98 C </line>
</atom-coordinate>
<distance-map>
<line> ARG GLY ASN MET GLY ASN GLN LEU LEU GLU LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 16.37 17.44 14.60 11.67 9.82 8.62 6.42 5.30 5.53 3.85 </line>
<line>GLU CA 13.95 14.95 11.85 9.37 7.71 5.86 5.25 5.52 3.90 </line>
<line>LEU CA 10.97 11.92 9.23 6.15 4.94 5.25 5.57 3.79 </line>
<line>LEU CA 13.55 13.72 10.93 8.30 5.62 5.75 3.86 </line>
<line>GLN CA 14.77 14.45 11.04 9.42 6.04 3.80 </line>
<line>ASN CA 11.76 11.31 7.69 6.74 3.76 </line>
<line>GLY CA 9.09 8.49 5.39 3.77 </line>
<line>MET CA 5.42 5.78 3.72 </line>
<line>ASN CA 5.49 3.75 </line>
<line>GLY CA 3.77 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>LYS CA 394</line>
<line>GLU CA 335</line>
<line>LEU CA 374</line>
<line>LEU CA 339</line>
<line>GLN CA 240</line>
<line>ASN CA 215</line>
<line>GLY CA 234</line>
<line>MET CA 241</line>
<line>ASN CA 161</line>
<line>GLY CA 136</line>
<line>ARG CA 190</line>
</n14>
</entryChain>
<parallel>
<x>-60.3120002746582</x>
<y>99.09400177001953</y>
<z>76.9219970703125</z>
</parallel>
<rotation>
<x>0.6230000257492065</x>
<y>0.5640000104904175</y>
<z>0.5419999957084656</z>
<x>-0.3190000057220459</x>
<y>0.8159999847412109</y>
<z>-0.4819999933242798</z>
<x>-0.7139999866485596</x>
<y>0.12700000405311584</y>
<z>0.6880000233650208</z>
</rotation>
<rmsd>0.8610910177230835</rmsd>
<dmax>1.6604759693145752</dmax>
</indel>