NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1PA0A-2NOTA
confEVID 1PA0A-2NOTA
pdbIDA 1PA0
pdbIDB 2NOT
pdbChainA A
pdbChainB A
identity 0.286900013685226
indelSize 2
alignment <alignment>
<seq1>SLFELGKMILQETG--KNPAKSYGAYGCNCGVLGRGQPKDATDRCCYVHKCCYKKLT--GCDPKKDRYSYSWKDKTIVCGE-NNPCLKELCECDKAVAICLRENLGTYNKKYRYHLKPFCKKADPC</seq1>
<seq2>NLVQFSYLIQCANHGRRPT-RHYMDYGCYCGWGGSGTPVDELDRCCKIHDDCYSDAEKKGCSPKMSAYDYYCGENGPYCRNIKKKCLRFVCDCDVEAAFCFAKA--PYNNANWNIDTKKRCQ----</seq2>
<ss_1> HHHHHHHHHHH -- HHHHHHHHHHHHGGG -- EEE EEE - HHHHHHHHHHHHHHHHHHH GGG GGG GGG </ss_1>
<ss_2> HHHHHHHHHH -HHHH HHHHHHHHHHHHHHHHH HHHH EEE EEE HHHHHHHHHHHHHHHHHHH -- GGG HHHH ----</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1PA0</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1PA0A</entryIDChain>
<sequence>IVCGE-NNPCL</sequence>
<secondary-structure>EE - HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 555 CA ILE A 82 14.202 5.197 43.798 1.00 20.22 C </line>
<line>ATOM 563 CA VAL A 83 15.933 3.025 46.400 1.00 19.18 C </line>
<line>ATOM 570 CA CYS A 84 15.700 4.122 50.047 1.00 25.28 C </line>
<line>ATOM 576 CA GLY A 85 18.737 3.310 52.173 1.00 36.38 C </line>
<line>ATOM 580 CA GLU A 86 18.337 4.373 55.797 1.00 43.92 C </line>
<line>ATOM 589 CA ASN A 87 19.023 2.400 58.965 1.00 42.39 C </line>
<line>ATOM 597 CA ASN A 88 16.653 4.603 60.950 1.00 36.48 C </line>
<line>ATOM 605 CA PRO A 90 13.113 3.094 60.868 1.00 33.27 C </line>
<line>ATOM 612 CA CYS A 91 11.312 6.460 60.882 1.00 30.21 C </line>
<line>ATOM 618 CA LEU A 92 13.687 7.892 58.274 1.00 28.50 C </line>
</atom-coordinate>
<distance-map>
<line> LEU CYS PRO ASN ASN GLU GLY CYS VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 14.73 17.37 17.23 17.34 16.16 12.72 9.71 6.52 3.81 </line>
<line>VAL CA 13.03 15.58 14.74 14.65 12.95 9.79 6.42 3.82 </line>
<line>CYS CA 9.27 11.92 11.17 10.96 9.67 6.33 3.80 </line>
<line>GLY CA 9.15 11.87 10.36 9.11 6.86 3.80 </line>
<line>GLU CA 6.34 8.92 7.39 5.43 3.79 </line>
<line>ASN CA 7.69 8.92 6.25 3.80 </line>
<line>ASN CA 5.17 5.66 3.85 </line>
<line>PRO CA 5.48 3.82 </line>
<line>CYS CA 3.81 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>ILE CA 307</line>
<line>VAL CA 256</line>
<line>CYS CA 301</line>
<line>GLY CA 222</line>
<line>GLU CA 218</line>
<line>ASN CA 152</line>
<line>ASN CA 179</line>
<line>PRO CA 195</line>
<line>CYS CA 244</line>
<line>LEU CA 290</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2NOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2NOTA</entryIDChain>
<sequence>PYCRNIKKKCL</sequence>
<secondary-structure>EE HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 592 CA PRO A 82 13.263 11.086 25.774 1.00 2.00 C </line>
<line>ATOM 599 CA TYR A 83 12.025 14.652 25.615 1.00 2.00 C </line>
<line>ATOM 611 CA CYS A 84 8.703 16.412 26.107 1.00 2.00 C </line>
<line>ATOM 617 CA ARG A 85 6.963 18.363 23.377 1.00 5.31 C </line>
<line>ATOM 628 CA ASN A 86 4.109 20.093 25.261 1.00 3.46 C </line>
<line>ATOM 636 CA ILE A 87 4.442 23.825 25.984 1.00 2.00 C </line>
<line>ATOM 644 CA LYS A 88 0.857 25.103 26.105 1.00 10.64 C </line>
<line>ATOM 653 CA LYS A 89 -1.077 22.111 27.532 1.00 3.56 C </line>
<line>ATOM 662 CA LYS A 90 0.469 22.679 30.983 1.00 3.71 C </line>
<line>ATOM 671 CA CYS A 91 -0.675 19.578 32.934 1.00 4.58 C </line>
<line>ATOM 677 CA LEU A 92 0.513 17.277 30.127 1.00 2.00 C </line>
</atom-coordinate>
<distance-map>
<line> LEU CYS LYS LYS LYS ILE ASN ARG CYS TYR PRO </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>PRO CA 14.83 17.82 18.03 18.17 18.72 15.50 12.85 9.92 7.02 3.78 </line>
<line>TYR CA 12.64 15.46 15.06 15.20 15.30 11.91 9.61 6.66 3.79 </line>
<line>CYS CA 9.16 12.02 11.44 11.41 11.71 8.55 5.95 3.78 </line>
<line>ARG CA 9.40 12.29 10.89 9.80 9.49 6.56 3.83 </line>
<line>ASN CA 6.67 9.06 7.26 6.01 6.03 3.82 </line>
<line>ILE CA 8.69 9.62 6.49 5.98 3.81 </line>
<line>LYS CA 8.81 8.92 5.46 3.84 </line>
<line>LYS CA 5.71 5.98 3.82 </line>
<line>LYS CA 5.47 3.84 </line>
<line>CYS CA 3.82 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>PRO CA 331</line>
<line>TYR CA 305</line>
<line>CYS CA 309</line>
<line>ARG CA 237</line>
<line>ASN CA 221</line>
<line>ILE CA 168</line>
<line>LYS CA 133</line>
<line>LYS CA 189</line>
<line>LYS CA 215</line>
<line>CYS CA 276</line>
<line>LEU CA 315</line>
</n14>
</entryChain>
<parallel>
<x>10.79800033569336</x>
<y>-15.04699993133545</y>
<z>27.2810001373291</z>
</parallel>
<rotation>
<x>-0.057999998331069946</x>
<y>-0.6039999723434448</y>
<z>-0.7950000166893005</z>
<x>0.3059999942779541</x>
<y>-0.7689999938011169</y>
<z>0.5619999766349792</z>
<x>-0.949999988079071</x>
<y>-0.210999995470047</y>
<z>0.2290000021457672</z>
</rotation>
<rmsd>0.9259499907493591</rmsd>
<dmax>2.030078887939453</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2NOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2NOTA</entryIDChain>
<sequence>CFAKA--PYNNA</sequence>
<secondary-structure>HHHH -- GG</secondary-structure>
<atom-coordinate>
<line>ATOM 779 CA CYS A 105 17.365 8.881 36.705 1.00 2.00 C </line>
<line>ATOM 785 CA PHE A 106 16.671 5.115 36.514 1.00 2.00 C </line>
<line>ATOM 796 CA ALA A 107 19.189 4.693 33.684 1.00 5.40 C </line>
<line>ATOM 801 CA LYS A 108 22.046 6.687 35.174 1.00 6.66 C </line>
<line>ATOM 810 CA ALA A 109 21.458 5.127 38.617 1.00 2.00 C </line>
<line>ATOM 815 CA PRO A 110 23.196 1.856 39.636 1.00 2.00 C </line>
<line>ATOM 822 CA TYR A 111 21.020 -1.165 40.048 1.00 2.00 C </line>
<line>ATOM 834 CA ASN A 112 21.683 -3.308 43.127 1.00 2.00 C </line>
<line>ATOM 842 CA ASN A 113 20.080 -6.685 42.302 1.00 2.00 C </line>
<line>ATOM 850 CA ALA A 114 20.191 -7.202 46.080 1.00 4.99 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ASN ASN TYR PRO ALA LYS ALA PHE CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 18.83 16.76 14.44 11.20 9.59 5.87 5.39 5.48 3.83 </line>
<line>PHE CA 15.99 13.58 11.82 8.42 7.93 5.23 5.76 3.81 </line>
<line>ALA CA 17.21 14.30 12.63 8.84 7.72 5.45 3.79 </line>
<line>LYS CA 17.76 15.28 12.78 9.30 6.68 3.83 </line>
<line>ALA CA 14.47 12.45 9.57 6.47 3.84 </line>
<line>PRO CA 11.52 9.47 6.41 3.75 </line>
<line>TYR CA 8.57 6.04 3.81 </line>
<line>ASN CA 5.11 3.83 </line>
<line>ASN CA 3.81 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>CYS CA 363</line>
<line>PHE CA 434</line>
<line>ALA CA 342</line>
<line>LYS CA 272</line>
<line>ALA CA 292</line>
<line>PRO CA 255</line>
<line>TYR CA 299</line>
<line>ASN CA 255</line>
<line>ASN CA 229</line>
<line>ALA CA 202</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1PA0</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1PA0A</entryIDChain>
<sequence>CLRENLGTYNKK</sequence>
<secondary-structure>HHHH GGG GG</secondary-structure>
<atom-coordinate>
<line>ATOM 715 CA CYS A 105 1.877 7.921 42.107 1.00 25.81 C </line>
<line>ATOM 721 CA LEU A 106 2.148 11.421 40.653 1.00 24.94 C </line>
<line>ATOM 729 CA ARG A 107 3.966 10.054 37.611 1.00 29.07 C </line>
<line>ATOM 740 CA GLU A 108 1.393 7.293 37.173 1.00 34.98 C </line>
<line>ATOM 749 CA ASN A 109 -1.406 9.852 37.066 1.00 33.14 C </line>
<line>ATOM 757 CA LEU A 110 0.198 12.367 34.707 1.00 35.13 C </line>
<line>ATOM 765 CA GLY A 111 -2.452 11.197 32.271 1.00 34.33 C </line>
<line>ATOM 769 CA THR A 112 -5.112 13.277 34.017 1.00 35.03 C </line>
<line>ATOM 776 CA TYR A 113 -3.105 16.084 35.569 1.00 38.54 C </line>
<line>ATOM 788 CA ASN A 114 -5.117 19.300 35.364 1.00 41.52 C </line>
<line>ATOM 792 CA LYS A 115 -3.332 22.653 35.395 1.00 45.85 C </line>
<line>ATOM 801 CA LYS A 116 -6.572 24.381 36.392 1.00 46.21 C </line>
</atom-coordinate>
<distance-map>
<line> LYS LYS ASN TYR THR GLY LEU ASN GLU ARG LEU CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 19.36 17.01 14.96 11.58 11.96 11.23 8.79 6.32 5.00 5.40 3.80 </line>
<line>LEU CA 16.19 13.56 11.95 8.67 10.01 9.56 6.33 5.29 5.45 3.80 </line>
<line>ARG CA 17.83 14.73 13.15 9.51 10.28 8.43 5.29 5.40 3.80 </line>
<line>GLU CA 18.87 16.17 13.78 10.00 9.39 7.35 5.77 3.79 </line>
<line>ASN CA 15.43 13.05 10.29 6.63 5.90 5.09 3.80 </line>
<line>LEU CA 13.89 10.90 8.76 5.05 5.43 3.78 </line>
<line>GLY CA 14.41 11.91 9.07 5.93 3.80 </line>
<line>THR CA 11.45 9.64 6.17 3.78 </line>
<line>TYR CA 9.03 6.58 3.80 </line>
<line>ASN CA 5.38 3.80 </line>
<line>LYS CA 3.80 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>CYS CA 353</line>
<line>LEU CA 404</line>
<line>ARG CA 320</line>
<line>GLU CA 239</line>
<line>ASN CA 264</line>
<line>LEU CA 272</line>
<line>GLY CA 179</line>
<line>THR CA 214</line>
<line>TYR CA 302</line>
<line>ASN CA 259</line>
<line>LYS CA 242</line>
<line>LYS CA 220</line>
</n14>
</entryChain>
<parallel>
<x>20.99799919128418</x>
<y>-8.413999557495117</y>
<z>0.49300000071525574</z>
</parallel>
<rotation>
<x>-0.4490000009536743</x>
<y>-0.05299999937415123</y>
<z>-0.8920000195503235</z>
<x>-0.3919999897480011</x>
<y>-0.8849999904632568</y>
<z>0.25</z>
<x>-0.8029999732971191</x>
<y>0.4620000123977661</y>
<z>0.37700000405311584</z>
</rotation>
<rmsd>0.9527819752693176</rmsd>
<dmax>2.099630117416382</dmax>
</indel>