NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1PIOB-3DTMA
confEVID 1PIOB-3DTMA
pdbIDA 1PIO
pdbIDB 3DTM
pdbChainA B
pdbChainB A
identity 0.320499986410141
indelSize 3
alignment <alignment>
<seq1>-----KELNDLEKKYNAHIGVYALDTKSG-KEVKFNSDKRFAYASTSKAINSAILLEQVPYNK--LNKKVHINKDDIVAYSPILEKYVGKDITLKALIEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTSTPAAFGKTLNKLIANGKLSKENKKFLLDLMLNNKSGDTLIKDGVPKDYKVADKSGQSTYASRNDVAFVYPKGQSEPIVLVIFTNKDNKSDKPNDKLISETAKSVMKEF</seq1>
<seq2>HPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRSEERFPMMSTFKVLLCGAILSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKGLTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTTPVAMATTLRKLLTGELLTPASRQQLMDWMEADKVAGPLLRSVLPAGWFIADKSGAGERGSRGIVAALGP-DGKPSRIVVIYTTGSQATMDELNRQIAEIGASLIKHW</seq2>
<ss_1>----- HHHHHHH EEEEEEEE -EEEEE EEEGGGGHHHHHHHGGG -- EEEEE GGG GGG EEEEEHHHHHHHH HHHHHHHHHH HHHHHHHHHH GGG HHHHHHHHHH HHHHHHHHHHHH HHHH EEEEEEE EEEEEEEEE EEEEE HHHHHHHHHHH </ss_1>
<ss_2> HHHHHHHHHHH EEEEEEE EEE EEEGGGHHHHHHHHHHHHHH EEE GGG GGG EEEHHHHHHHH HHHHHHHHH HHHHHHHHHHH EEE HHHHHHHHHHHH HHHHHHHHHHHH GGGG EEEEEEE EEEEEEEEE - EEEEEEEE HHHHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1PIO</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1PIOB</entryIDChain>
<sequence>DTKSG-KEVKF</sequence>
<secondary-structure>E -EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 2181 CA ASP B 50 0.827 82.609 68.527 1.00 8.84 C </line>
<line>ATOM 2189 CA THR B 51 4.198 83.803 69.731 1.00 5.29 C </line>
<line>ATOM 2196 CA LYS B 52 2.833 87.409 69.901 1.00 11.03 C </line>
<line>ATOM 2205 CA SER B 53 -0.285 87.182 72.050 1.00 4.89 C </line>
<line>ATOM 2211 CA GLY B 54 0.583 83.768 73.437 1.00 5.08 C </line>
<line>ATOM 2215 CA LYS B 55 -2.726 82.298 72.280 1.00 5.67 C </line>
<line>ATOM 2224 CA GLU B 56 -2.742 78.512 71.865 1.00 9.89 C </line>
<line>ATOM 2233 CA VAL B 57 -4.761 76.051 69.842 1.00 12.60 C </line>
<line>ATOM 2240 CA LYS B 59 -4.285 72.448 70.914 1.00 12.36 C </line>
<line>ATOM 2249 CA PHE B 60 -5.729 69.053 69.996 1.00 13.75 C </line>
</atom-coordinate>
<distance-map>
<line> PHE LYS VAL GLU LYS GLY SER LYS THR ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 15.13 11.62 8.72 6.38 5.18 5.05 5.88 5.38 3.77 </line>
<line>THR CA 17.78 14.22 11.85 8.98 7.53 5.18 6.07 3.86 </line>
<line>LYS CA 20.25 16.60 13.66 10.68 7.92 5.55 3.79 </line>
<line>SER CA 19.04 15.31 12.20 9.01 5.46 3.79 </line>
<line>GLY CA 16.38 12.58 10.05 6.42 3.80 </line>
<line>LYS CA 13.77 10.07 7.01 3.81 </line>
<line>GLU CA 10.09 6.33 3.77 </line>
<line>VAL CA 7.07 3.79 </line>
<line>LYS CA 3.80 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>ASP CA 340</line>
<line>THR CA 306</line>
<line>LYS CA 227</line>
<line>SER CA 181</line>
<line>GLY CA 216</line>
<line>LYS CA 227</line>
<line>GLU CA 289</line>
<line>VAL CA 334</line>
<line>LYS CA 348</line>
<line>PHE CA 349</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3DTM</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>3DTMA</entryIDChain>
<sequence>DLNSGKILESF</sequence>
<secondary-structure> EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 190 CA ASP A 50 21.621 3.330 42.914 1.00 14.32 C </line>
<line>ATOM 198 CA LEU A 51 22.225 6.842 41.644 1.00 17.82 C </line>
<line>ATOM 206 CA ASN A 52 25.263 7.170 43.941 1.00 21.96 C </line>
<line>ATOM 214 CA SER A 53 27.236 4.002 43.282 1.00 20.98 C </line>
<line>ATOM 220 CA GLY A 54 25.759 2.630 40.052 1.00 19.21 C </line>
<line>ATOM 224 CA LYS A 55 25.052 -0.557 42.020 1.00 17.51 C </line>
<line>ATOM 233 CA ILE A 56 22.169 -2.654 40.615 1.00 12.27 C </line>
<line>ATOM 241 CA LEU A 57 19.600 -3.008 43.399 1.00 11.34 C </line>
<line>ATOM 249 CA GLU A 58 17.038 -5.213 41.636 1.00 11.20 C </line>
<line>ATOM 258 CA SER A 59 16.484 -6.442 38.106 1.00 8.34 C </line>
<line>ATOM 264 CA PHE A 60 14.182 -8.596 35.956 1.00 5.22 C </line>
</atom-coordinate>
<distance-map>
<line> PHE SER GLU LEU ILE LYS GLY SER ASN LEU ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 15.68 12.04 9.78 6.67 6.43 5.26 5.08 5.67 5.39 3.78 </line>
<line>LEU CA 18.31 14.90 13.12 10.34 9.55 7.93 5.72 5.99 3.82 </line>
<line>ASN CA 20.86 17.22 15.04 11.66 10.82 7.97 6.00 3.79 </line>
<line>SER CA 19.56 15.86 13.84 10.37 8.78 5.21 3.81 </line>
<line>GLY CA 16.64 13.12 11.84 9.00 6.41 3.81 </line>
<line>LYS CA 14.82 11.11 9.28 6.13 3.83 </line>
<line>ILE CA 10.99 7.28 5.82 3.80 </line>
<line>LEU CA 10.77 7.04 3.81 </line>
<line>GLU CA 7.20 3.78 </line>
<line>SER CA 3.82 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>ASP CA 316</line>
<line>LEU CA 346</line>
<line>ASN CA 239</line>
<line>SER CA 193</line>
<line>GLY CA 259</line>
<line>LYS CA 233</line>
<line>ILE CA 291</line>
<line>LEU CA 307</line>
<line>GLU CA 341</line>
<line>SER CA 362</line>
<line>PHE CA 350</line>
</n14>
</entryChain>
<parallel>
<x>-22.87299919128418</x>
<y>81.06700134277344</y>
<z>28.768999099731445</z>
</parallel>
<rotation>
<x>-0.19099999964237213</x>
<y>0.8259999752044678</y>
<z>0.531000018119812</z>
<x>0.8659999966621399</x>
<y>0.3959999978542328</y>
<z>-0.3050000071525574</z>
<x>-0.4620000123977661</x>
<y>0.4020000100135803</y>
<z>-0.7910000085830688</z>
</rotation>
<rmsd>1.5324560403823853</rmsd>
<dmax>2.583298921585083</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1PIO</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1PIOB</entryIDChain>
<sequence>VPYNK--LNKKV</sequence>
<secondary-structure> -- EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 2437 CA VAL B 84 28.885 77.932 65.899 1.00 15.81 C </line>
<line>ATOM 2444 CA PRO B 87 28.647 81.642 64.991 1.00 9.91 C </line>
<line>ATOM 2451 CA TYR B 88 27.589 82.120 61.392 1.00 7.53 C </line>
<line>ATOM 2463 CA ASN B 89 31.124 83.411 60.651 1.00 21.19 C </line>
<line>ATOM 2471 CA LYS B 90 32.456 79.890 61.322 1.00 16.46 C </line>
<line>ATOM 2480 CA LEU B 91 29.939 77.693 59.416 1.00 17.27 C </line>
<line>ATOM 2488 CA ASN B 92 32.589 77.518 56.705 1.00 20.37 C </line>
<line>ATOM 2496 CA LYS B 93 34.639 75.246 58.988 1.00 6.68 C </line>
<line>ATOM 2505 CA LYS B 94 35.136 71.970 57.117 1.00 12.61 C </line>
<line>ATOM 2514 CA VAL B 95 34.649 68.407 58.254 1.00 8.40 C </line>
</atom-coordinate>
<distance-map>
<line> VAL LYS LYS ASN LEU LYS ASN TYR PRO VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 13.51 12.32 9.39 9.92 6.57 6.13 7.91 6.29 3.83 </line>
<line>PRO CA 16.02 14.06 10.62 10.06 6.95 5.57 5.30 3.78 </line>
<line>TYR CA 15.74 13.35 10.14 8.26 5.39 5.35 3.84 </line>
<line>ASN CA 15.60 12.63 9.04 7.24 5.97 3.82 </line>
<line>LYS CA 12.09 9.36 5.64 5.19 3.85 </line>
<line>LEU CA 10.48 8.07 5.32 3.80 </line>
<line>ASN CA 9.47 6.12 3.82 </line>
<line>LYS CA 6.88 3.81 </line>
<line>LYS CA 3.77 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>VAL CA 302</line>
<line>PRO CA 242</line>
<line>TYR CA 270</line>
<line>ASN CA 193</line>
<line>LYS CA 218</line>
<line>LEU CA 303</line>
<line>ASN CA 232</line>
<line>LYS CA 230</line>
<line>LYS CA 248</line>
<line>VAL CA 277</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3DTM</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>3DTMA</entryIDChain>
<sequence>IDAGQEQLGRRI</sequence>
<secondary-structure>HH EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 459 CA ILE A 84 26.746 22.409 23.825 1.00 5.04 C </line>
<line>ATOM 467 CA ASP A 85 29.463 21.528 26.422 1.00 5.94 C </line>
<line>ATOM 475 CA ALA A 86 31.956 21.029 23.591 1.00 7.48 C </line>
<line>ATOM 480 CA GLY A 87 30.980 24.338 21.958 1.00 8.60 C </line>
<line>ATOM 484 CA GLN A 88 29.475 22.711 18.834 1.00 8.84 C </line>
<line>ATOM 493 CA GLU A 89 25.934 23.814 19.673 1.00 6.63 C </line>
<line>ATOM 502 CA GLN A 90 24.190 26.527 21.612 1.00 5.17 C </line>
<line>ATOM 511 CA LEU A 91 21.121 26.257 23.779 1.00 2.93 C </line>
<line>ATOM 519 CA GLY A 92 19.914 29.604 22.441 1.00 2.14 C </line>
<line>ATOM 523 CA ARG A 93 20.297 28.827 18.704 1.00 2.00 C </line>
<line>ATOM 534 CA ARG A 94 17.037 29.354 16.811 1.00 2.00 C </line>
<line>ATOM 545 CA ILE A 95 15.788 26.799 14.281 1.00 2.00 C </line>
</atom-coordinate>
<distance-map>
<line> ILE ARG ARG GLY LEU GLN GLU GLN GLY ALA ASP ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 15.18 13.85 10.44 10.02 6.82 5.33 4.46 5.70 5.01 5.39 3.86 </line>
<line>ASP CA 19.03 17.55 14.03 13.12 9.95 8.71 7.95 7.68 5.49 3.81 </line>
<line>ALA CA 19.53 18.38 14.85 14.83 12.03 9.72 7.71 5.62 3.82 </line>
<line>GLY CA 17.20 15.69 12.04 12.26 10.21 7.14 5.56 3.83 </line>
<line>GLN CA 14.99 14.25 11.03 12.33 10.34 7.09 3.80 </line>
<line>GLU CA 11.87 10.86 7.61 8.80 6.78 3.76 </line>
<line>GLN CA 11.15 9.07 5.38 5.33 3.77 </line>
<line>LEU CA 10.91 8.65 5.75 3.80 </line>
<line>GLY CA 9.56 6.33 3.84 </line>
<line>ARG CA 6.63 3.81 </line>
<line>ARG CA 3.81 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>ILE CA 299</line>
<line>ASP CA 256</line>
<line>ALA CA 196</line>
<line>GLY CA 162</line>
<line>GLN CA 183</line>
<line>GLU CA 258</line>
<line>GLN CA 260</line>
<line>LEU CA 315</line>
<line>GLY CA 235</line>
<line>ARG CA 243</line>
<line>ARG CA 247</line>
<line>ILE CA 299</line>
</n14>
</entryChain>
<parallel>
<x>4.489999771118164</x>
<y>54.84400177001953</y>
<z>38.72600173950195</z>
</parallel>
<rotation>
<x>-0.15399999916553497</x>
<y>0.9819999933242798</y>
<z>0.11100000143051147</z>
<x>0.10700000077486038</x>
<y>0.12800000607967377</y>
<z>-0.9860000014305115</z>
<x>-0.9819999933242798</x>
<y>-0.14000000059604645</y>
<z>-0.125</z>
</rotation>
<rmsd>3.3434150218963623</rmsd>
<dmax>4.487854957580566</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>3DTM</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>3DTMA</entryIDChain>
<sequence>AALGP-DGKPS</sequence>
<secondary-structure>EEEE - </secondary-structure>
<atom-coordinate>
<line>ATOM 1706 CA ALA A 247 13.098 7.935 36.115 1.00 2.87 C </line>
<line>ATOM 1711 CA ALA A 248 15.426 9.434 38.692 1.00 2.60 C </line>
<line>ATOM 1716 CA LEU A 249 13.492 9.452 41.931 1.00 3.61 C </line>
<line>ATOM 1724 CA GLY A 250 13.871 9.435 45.710 1.00 7.63 C </line>
<line>ATOM 1728 CA PRO A 251 12.439 10.690 48.979 1.00 11.40 C </line>
<line>ATOM 1735 CA ASP A 252 13.186 13.900 50.828 1.00 15.03 C </line>
<line>ATOM 1743 CA GLY A 253 13.453 16.031 47.693 1.00 15.76 C </line>
<line>ATOM 1747 CA LYS A 254 16.514 14.340 46.311 1.00 16.20 C </line>
<line>ATOM 1756 CA PRO A 255 16.848 11.572 43.724 1.00 12.76 C </line>
<line>ATOM 1763 CA SER A 256 18.800 8.563 45.025 1.00 10.27 C </line>
</atom-coordinate>
<distance-map>
<line> SER PRO LYS GLY ASP PRO GLY LEU ALA ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 10.60 9.23 12.52 14.13 15.88 13.17 9.74 6.02 3.78 </line>
<line>ALA CA 7.23 5.65 9.13 11.33 13.12 10.79 7.19 3.77 </line>
<line>LEU CA 6.21 4.36 7.23 8.75 9.95 7.23 3.80 </line>
<line>GLY CA 5.05 4.17 5.60 6.90 6.83 3.78 </line>
<line>PRO CA 7.79 6.92 6.09 5.59 3.78 </line>
<line>ASP CA 9.68 8.32 5.63 3.80 </line>
<line>GLY CA 9.56 6.87 3.76 </line>
<line>LYS CA 6.34 3.80 </line>
<line>PRO CA 3.82 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>ALA CA 583</line>
<line>ALA CA 529</line>
<line>LEU CA 452</line>
<line>GLY CA 338</line>
<line>PRO CA 250</line>
<line>ASP CA 165</line>
<line>GLY CA 188</line>
<line>LYS CA 249</line>
<line>PRO CA 371</line>
<line>SER CA 329</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1PIO</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1PIOB</entryIDChain>
<sequence>AFVYPKGQSEP</sequence>
<secondary-structure>EEEE </secondary-structure>
<atom-coordinate>
<line>ATOM 3705 CA ALA B 248 6.457 75.251 60.857 1.00 8.93 C </line>
<line>ATOM 3710 CA PHE B 249 6.775 78.880 61.857 1.00 2.00 C </line>
<line>ATOM 3721 CA VAL B 250 3.922 80.451 59.863 1.00 5.87 C </line>
<line>ATOM 3728 CA TYR B 251 3.969 84.222 59.234 1.00 15.36 C </line>
<line>ATOM 3740 CA PRO B 252 0.512 85.864 59.111 1.00 25.07 C </line>
<line>ATOM 3747 CA LYS B 253 0.297 88.662 56.523 1.00 39.30 C </line>
<line>ATOM 3756 CA GLY B 254 1.180 91.806 58.525 1.00 48.93 C </line>
<line>ATOM 3760 CA GLN B 255 3.048 90.103 61.388 1.00 36.93 C </line>
<line>ATOM 3769 CA SER B 256 6.759 89.574 62.043 1.00 34.96 C </line>
<line>ATOM 3775 CA GLU B 257 5.955 87.383 65.017 1.00 17.21 C </line>
<line>ATOM 3784 CA PRO B 258 5.564 83.745 63.924 1.00 10.69 C </line>
</atom-coordinate>
<distance-map>
<line> PRO GLU SER GLN GLY LYS PRO TYR VAL PHE ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 9.07 12.84 14.38 15.25 17.53 15.38 12.29 9.45 5.87 3.78 </line>
<line>PHE CA 5.42 9.11 10.70 11.83 14.47 12.89 9.77 6.58 3.82 </line>
<line>VAL CA 5.48 8.87 9.80 9.81 11.76 9.58 6.44 3.82 </line>
<line>TYR CA 4.98 6.88 6.66 6.33 8.11 6.37 3.83 </line>
<line>PRO CA 7.29 8.17 7.83 5.44 6.01 3.82 </line>
<line>LYS CA 10.33 10.29 8.55 5.77 3.83 </line>
<line>GLY CA 10.65 9.19 6.96 3.82 </line>
<line>GLN CA 7.29 5.39 3.81 </line>
<line>SER CA 6.24 3.78 </line>
<line>GLU CA 3.82 </line>
<line>PRO CA </line>
</distance-map>
<n14>
<line>ALA CA 598</line>
<line>PHE CA 534</line>
<line>VAL CA 485</line>
<line>TYR CA 365</line>
<line>PRO CA 303</line>
<line>LYS CA 197</line>
<line>GLY CA 160</line>
<line>GLN CA 208</line>
<line>SER CA 234</line>
<line>GLU CA 278</line>
<line>PRO CA 392</line>
</n14>
</entryChain>
<parallel>
<x>9.857000350952148</x>
<y>-73.11699676513672</y>
<z>-15.82699966430664</z>
</parallel>
<rotation>
<x>0.925000011920929</x>
<y>0.1080000028014183</y>
<z>-0.3659999966621399</z>
<x>0.2409999966621399</x>
<y>0.5770000219345093</y>
<z>0.7799999713897705</z>
<x>-0.29499998688697815</x>
<y>0.8100000023841858</y>
<z>-0.5080000162124634</z>
</rotation>
<rmsd>1.3988560438156128</rmsd>
<dmax>1.83480703830719</dmax>
</indel>