NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1PVRB-1XNSA
confEVID 1PVRB-1XNSA
pdbIDA 1PVR
pdbIDB 1XNS
pdbChainA B
pdbChainB A
identity 0.975199997425079
indelSize 1
alignment <alignment>
<seq1>TSDEVRKNLMDMFRDRQAFSEHTWKMLLSVCRSWAAWCKLNNRKWFPAEPEDVRDYLLYLQARGLAVKTIQQHLGQLNMLHRRSGLPRPSDSNAVSLVMRRIRKENVDAGERAKQALAFERTDFDQVRSLMENSDRCQDIRNLAFLGIAYNTLLRLAEIARIRVKDISRTDGGRMLIHIGRTKTLVSTAGVEKALSLGVTKLVERWISVSGVADDPNNYLFCRVRKNGVAAPSATSQLSNSALGGIFGATHRLIYGAKDDSGQRYLAWSGHSARVGAARDMARAGVSIPEIMQAGGWTNVNIVMNYIRNL---TGAMVRLLED</seq1>
<seq2>-SDEVRKNLMDMFRDRQAFSEHTWKMLLSVCRSWAAWCKLNNRKWFPAEPEDVRDYLLYLQARGLAVKTIQQHLGQLNMLHRRSGLPRPSDSNAVSLVMRRIRKENVDAGERAKQALAFERTDFDQVRSLMENSDRCQDIRNLAFLGIAYNTLLRIAEIARIRVKDISRTDGGRMLIHIGRTKTLVSTAGVEKALSLGVTKLVERWISVSGVADDPNNYLFCRVRKNGVAAPSATSQLSTRALEGIFEATHRLIYGAKDDSGQRYLAWSGHSARVGAARDMARAGVSIPEIMQAGGWTNVNIVMNYIRNLDSETGAMVRLLED</seq2>
<ss_1> HHHHHHHHHHHH GGG HHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHH HHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHGGG HHHHHHHHHHH HHHHHHHHHHHHHHHH HHHGGG GGEEEEE EEEEEEEEE EEE HHHHHHHHHHHHH GGG EEE EEE HHHHHHHHHHHHHHHH HHHHHHHHHHHH HHHHHHH HHHHH --- HHHHHH </ss_1>
<ss_2>- HHHHHHHHHHH GGG HHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHH HHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHH HHHHHHHHHHH HHHHHHHHHHHHHHHH HHHHHH GGEEE GGG HHHHHHHHHHHHH HHHHHHHHHHHHHHHH HHHHHHHHHHHH HHHHHHH HHHHHH GGG HHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1PVR</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1PVRB</entryIDChain>
<sequence>YIRNL---TGAMV</sequence>
<secondary-structure> --- HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 6402 CA TYR B 324 78.630 41.321 90.824 1.00 77.88 C </line>
<line>ATOM 6414 CA ILE B 325 81.723 42.223 92.999 1.00 83.93 C </line>
<line>ATOM 6422 CA ARG B 326 81.301 41.432 96.743 1.00 90.31 C </line>
<line>ATOM 6433 CA ASN B 327 84.119 38.849 96.981 1.00 93.44 C </line>
<line>ATOM 6441 CA LEU B 328 87.342 40.729 97.683 1.00 96.91 C </line>
<line>ATOM 6449 CA THR B 332 90.359 41.753 101.672 1.00 98.61 C </line>
<line>ATOM 6456 CA GLY B 333 92.155 41.509 105.017 1.00 95.40 C </line>
<line>ATOM 6460 CA ALA B 334 92.518 45.221 105.716 1.00 95.50 C </line>
<line>ATOM 6465 CA MET B 335 92.402 43.836 109.327 1.00 91.62 C </line>
<line>ATOM 6473 CA VAL B 336 95.074 41.331 110.379 1.00 88.67 C </line>
</atom-coordinate>
<distance-map>
<line> VAL MET ALA GLY THR LEU ASN ARG ILE TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 25.55 23.20 20.73 19.61 15.98 11.10 8.61 6.49 3.89 </line>
<line>ILE CA 21.93 19.58 16.95 15.93 12.25 7.47 5.74 3.85 </line>
<line>ARG CA 19.38 16.95 14.86 13.65 10.32 6.15 3.83 </line>
<line>ASN CA 17.48 15.68 13.69 11.67 8.33 3.80 </line>
<line>LEU CA 14.88 13.07 10.56 8.81 5.11 </line>
<line>THR CA 9.91 8.19 5.75 3.80 </line>
<line>GLY CA 6.11 4.90 3.79 </line>
<line>ALA CA 6.59 3.87 </line>
<line>MET CA 3.81 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>TYR CA 329</line>
<line>ILE CA 292</line>
<line>ARG CA 198</line>
<line>ASN CA 175</line>
<line>LEU CA 158</line>
<line>THR CA 111</line>
<line>GLY CA 92</line>
<line>ALA CA 88</line>
<line>MET CA 79</line>
<line>VAL CA 74</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XNS</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1XNSA</entryIDChain>
<sequence>YIRNLDSETGAMV</sequence>
<secondary-structure>H GGG HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 3820 CA TYR A 324 26.666 -3.124 -21.189 1.00 72.38 C </line>
<line>ATOM 3832 CA ILE A 325 23.447 -1.522 -19.784 1.00 71.07 C </line>
<line>ATOM 3840 CA ARG A 326 24.596 2.133 -19.621 1.00 71.42 C </line>
<line>ATOM 3851 CA ASN A 327 22.286 3.604 -22.299 1.00 69.62 C </line>
<line>ATOM 3859 CA LEU A 328 19.158 2.009 -20.909 1.00 69.57 C </line>
<line>ATOM 3867 CA ASP A 329 16.524 4.399 -19.616 1.00 70.01 C </line>
<line>ATOM 3875 CA SER A 330 16.189 2.408 -16.367 1.00 69.24 C </line>
<line>ATOM 3881 CA GLU A 331 19.878 3.164 -15.624 1.00 65.68 C </line>
<line>ATOM 3890 CA THR A 332 19.896 6.956 -16.292 1.00 59.84 C </line>
<line>ATOM 3897 CA GLY A 333 20.439 7.753 -12.610 1.00 53.19 C </line>
<line>ATOM 3901 CA ALA A 334 19.121 9.721 -9.698 1.00 46.84 C </line>
<line>ATOM 3906 CA MET A 335 19.387 13.171 -11.239 1.00 42.33 C </line>
<line>ATOM 3914 CA VAL A 336 17.154 12.238 -14.204 1.00 40.54 C </line>
</atom-coordinate>
<distance-map>
<line> VAL MET ALA GLY THR GLU SER ASP LEU ASN ARG ILE TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 19.37 20.43 18.81 15.19 13.09 10.80 12.79 12.73 9.10 8.10 5.86 3.86 </line>
<line>ILE CA 16.13 17.48 15.71 12.11 9.83 7.21 8.93 9.11 5.67 5.83 3.83 </line>
<line>ARG CA 13.67 14.81 13.64 9.90 7.51 6.27 9.02 8.38 5.59 3.83 </line>
<line>ASN CA 12.90 14.91 14.36 10.70 7.28 7.11 8.59 6.41 3.78 </line>
<line>LEU CA 12.39 14.77 13.61 10.17 6.81 5.46 5.44 3.78 </line>
<line>ASP CA 9.55 12.46 11.55 8.70 5.38 5.36 3.83 </line>
<line>SER CA 10.11 12.34 10.32 7.79 5.87 3.84 </line>
<line>GLU CA 9.58 10.94 8.87 5.52 3.85 </line>
<line>THR CA 6.31 8.03 7.19 3.81 </line>
<line>GLY CA 5.78 5.69 3.75 </line>
<line>ALA CA 5.52 3.79 </line>
<line>MET CA 3.83 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>TYR CA 376</line>
<line>ILE CA 341</line>
<line>ARG CA 264</line>
<line>ASN CA 222</line>
<line>LEU CA 236</line>
<line>ASP CA 192</line>
<line>SER CA 214</line>
<line>GLU CA 235</line>
<line>THR CA 179</line>
<line>GLY CA 144</line>
<line>ALA CA 111</line>
<line>MET CA 99</line>
<line>VAL CA 112</line>
</n14>
</entryChain>
<parallel>
<x>64.06700134277344</x>
<y>38.1879997253418</y>
<z>116.25499725341797</z>
</parallel>
<rotation>
<x>-0.925000011920929</x>
<y>0.20399999618530273</y>
<z>0.3199999928474426</z>
<x>0.1979999989271164</x>
<y>-0.45899999141693115</y>
<z>0.8659999966621399</z>
<x>0.3240000009536743</x>
<y>0.8640000224113464</y>
<z>0.38499999046325684</z>
</rotation>
<rmsd>2.154723882675171</rmsd>
<dmax>3.457973003387451</dmax>
</indel>