NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1QQ4A-1GDUA
confEVID 1QQ4A-1GDUA
pdbIDA 1QQ4
pdbIDB 1GDU
pdbChainA A
pdbChainB A
identity 0.123999997973442
indelSize 3
alignment <alignment>
<seq1>-------ANIVGGIEYSI--NNASLCSVGFSVTRGATKGFVTAGHCGT----VNATARIGG------AVVGTFAARVF------PGNDRAWVSLTSAQTLLPRVANGSSFVTVRGS-TEAAVGAAVCHSGRTT------------GYQCGTITAKN-----------VTANYAEGAVRGLTQS-----NACMGRGDSGGSWITSAGQAQGVMSGGNVQSNGNNCGIPASQRSSLFERL---QPILSQYGLSLVTG</seq1>
<seq2>IVGGTSASAGDFPFIVSISRNGGPWCG----GSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSRTSGGITSSLSSVRVHPSYSGNNNDLAILKLSTSIPSGGNI----GYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTSAIT---------NQMFCAGVSSGGKDSCQGDSGGPIVDSSNTLIGAVSWGN-----GCAR---PNYSGVYASVGALRSFIDTYA------</seq2>
<ss_1>------- EEEEEEEEE-- EEEEEEEEEEE EEEEEE GGG ---- EEEEE ------EEEEEEEEEE ------ EEEEEEE EEE EEE - EEEEEEE ------------EEEEEEEEE -----------EEEEE EEE EEEE----- EEEE EEEEEE EEEE ---HHHH </ss_1>
<ss_2> EEEEEEE EE----EEEEEEEEEEE GGG EEEE EEE EEEEE EEEEE ---- EEEEEEE EEEEEEEEE HHHHHHHH HHHH --------- EEEEE EEE EEEEE EEEEEEE ----- --- EEEEEHHHHHHHHHH ------</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1QQ4</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1QQ4A</entryIDChain>
<sequence>GHCGT----VNATA</sequence>
<secondary-structure>GGG ---- EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 240 CA GLY A 35 17.952 25.265 22.109 1.00 6.15 C </line>
<line>ATOM 244 CA HIS A 36 14.724 26.893 20.943 1.00 6.04 C </line>
<line>ATOM 254 CA CYS A 37 14.623 24.412 18.044 1.00 6.84 C </line>
<line>ATOM 260 CA GLY A 38 13.608 21.467 20.200 1.00 8.84 C </line>
<line>ATOM 264 CA THR A 39 12.900 19.919 23.583 1.00 9.54 C </line>
<line>ATOM 271 CA VAL A 40 14.787 17.013 25.136 1.00 9.80 C </line>
<line>ATOM 278 CA ASN A 41 13.928 13.716 23.412 1.00 11.09 C </line>
<line>ATOM 286 CA ALA A 42 12.458 15.451 20.345 1.00 8.94 C </line>
<line>ATOM 291 CA THR A 43 13.111 13.551 17.102 1.00 8.63 C </line>
<line>ATOM 298 CA ALA A 44 15.300 15.072 14.383 1.00 7.00 C </line>
</atom-coordinate>
<distance-map>
<line> ALA THR ALA ASN VAL THR GLY CYS HIS GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 13.06 13.63 11.38 12.30 9.34 7.50 6.08 5.32 3.80 </line>
<line>HIS CA 13.53 13.98 11.68 13.43 10.73 7.68 5.59 3.82 </line>
<line>CYS CA 10.05 11.01 9.50 11.99 10.25 7.34 3.79 </line>
<line>GLY CA 8.81 8.52 6.13 8.40 6.75 3.79 </line>
<line>THR CA 10.67 9.09 5.54 6.29 3.80 </line>
<line>VAL CA 10.94 8.91 5.55 3.82 </line>
<line>ASN CA 9.23 6.36 3.82 </line>
<line>ALA CA 6.62 3.81 </line>
<line>THR CA 3.81 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>GLY CA 459</line>
<line>HIS CA 412</line>
<line>CYS CA 448</line>
<line>GLY CA 382</line>
<line>THR CA 282</line>
<line>VAL CA 254</line>
<line>ASN CA 233</line>
<line>ALA CA 281</line>
<line>THR CA 299</line>
<line>ALA CA 380</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1GDU</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1GDUA</entryIDChain>
<sequence>AHCVSGYAQSGFQI</sequence>
<secondary-structure> GGG EE</secondary-structure>
<atom-coordinate>
<line>ATOM 536 CA ALA A 56 9.085 -3.313 2.647 1.00 7.36 C </line>
<line>ATOM 546 CA HIS A 57 10.759 -1.063 0.078 1.00 8.20 C </line>
<line>ATOM 563 CA CYS A 58 9.462 1.984 1.908 1.00 7.63 C </line>
<line>ATOM 573 CA VAL A 59 11.436 1.159 5.057 1.00 8.72 C </line>
<line>ATOM 589 CA SER A 59A 14.045 -1.566 4.595 1.00 9.33 C </line>
<line>ATOM 600 CA GLY A 59B 17.458 -0.476 5.839 1.00 12.54 C </line>
<line>ATOM 607 CA TYR A 59C 16.635 3.217 6.250 1.00 9.48 C </line>
<line>ATOM 628 CA ALA A 59D 17.151 5.074 9.502 1.00 9.21 C </line>
<line>ATOM 638 CA GLN A 60 13.964 4.482 11.444 1.00 12.29 C </line>
<line>ATOM 654 CA SER A 61 14.146 7.883 13.137 1.00 14.39 C </line>
<line>ATOM 665 CA GLY A 62 13.354 9.596 9.811 1.00 13.04 C </line>
<line>ATOM 672 CA PHE A 63 9.809 8.312 9.592 1.00 9.28 C </line>
<line>ATOM 692 CA GLN A 64 6.563 9.694 10.955 1.00 9.88 C </line>
<line>ATOM 709 CA ILE A 65 3.108 8.233 10.542 1.00 9.27 C </line>
</atom-coordinate>
<distance-map>
<line> ILE GLN PHE GLY SER GLN ALA TYR GLY SER VAL CYS HIS ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 15.21 15.64 13.56 15.37 16.16 12.73 13.51 10.61 9.40 5.61 5.60 5.36 3.80 </line>
<line>HIS CA 15.95 15.86 13.39 14.67 16.19 13.05 12.94 9.54 8.85 5.61 5.49 3.78 </line>
<line>CYS CA 12.41 12.24 9.96 11.64 13.52 10.84 11.24 8.47 9.24 6.39 3.81 </line>
<line>VAL CA 12.23 11.46 8.62 9.87 10.86 7.63 8.23 5.72 6.29 3.80 </line>
<line>SER CA 15.84 14.94 11.85 12.34 12.74 9.14 8.82 5.69 3.79 </line>
<line>GLY CA 17.43 15.76 12.24 11.58 11.58 8.26 6.66 3.81 </line>
<line>TYR CA 15.05 12.87 9.15 8.01 8.68 5.98 3.78 </line>
<line>ALA CA 14.43 11.64 8.02 5.91 5.49 3.78 </line>
<line>GLN CA 11.52 9.07 5.95 5.40 3.80 </line>
<line>SER CA 11.34 8.10 5.62 3.82 </line>
<line>GLY CA 10.36 6.89 3.78 </line>
<line>PHE CA 6.77 3.78 </line>
<line>GLN CA 3.77 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>ALA CA 840</line>
<line>HIS CA 704</line>
<line>CYS CA 791</line>
<line>VAL CA 712</line>
<line>SER CA 596</line>
<line>GLY CA 392</line>
<line>TYR CA 412</line>
<line>ALA CA 355</line>
<line>GLN CA 492</line>
<line>SER CA 404</line>
<line>GLY CA 439</line>
<line>PHE CA 639</line>
<line>GLN CA 724</line>
<line>ILE CA 889</line>
</n14>
</entryChain>
<parallel>
<x>3.325000047683716</x>
<y>16.990999221801758</y>
<z>15.131999969482422</z>
</parallel>
<rotation>
<x>-0.4729999899864197</x>
<y>0.36399999260902405</y>
<z>0.8019999861717224</z>
<x>-0.7269999980926514</x>
<y>-0.6759999990463257</y>
<z>-0.12200000137090683</z>
<x>0.4970000088214874</x>
<y>-0.640999972820282</y>
<z>0.5849999785423279</z>
</rotation>
<rmsd>4.171877861022949</rmsd>
<dmax>6.611179828643799</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1QQ4</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1QQ4A</entryIDChain>
<sequence>GLTQS-----NACMG</sequence>
<secondary-structure> EEEE----- </secondary-structure>
<atom-coordinate>
<line>ATOM 945 CA GLY A 130 25.408 36.750 26.266 1.00 7.38 C </line>
<line>ATOM 949 CA LEU A 131 24.643 36.689 22.545 1.00 6.74 C </line>
<line>ATOM 957 CA THR A 132 27.015 37.981 19.894 1.00 6.25 C </line>
<line>ATOM 964 CA GLN A 133 25.630 40.430 17.342 1.00 7.53 C </line>
<line>ATOM 973 CA SER A 134 26.413 40.754 13.639 1.00 7.22 C </line>
<line>ATOM 979 CA ASN A 135 25.062 42.807 10.743 1.00 8.59 C </line>
<line>ATOM 987 CA ALA A 136 24.950 39.823 8.381 1.00 8.11 C </line>
<line>ATOM 992 CA CYS A 137 21.284 39.256 7.519 1.00 6.55 C </line>
<line>ATOM 998 CA MET A 138 19.238 36.226 8.588 1.00 6.91 C </line>
<line>ATOM 1006 CA GLY A 139 15.714 34.869 8.367 1.00 8.13 C </line>
</atom-coordinate>
<distance-map>
<line> GLY MET CYS ALA ASN SER GLN THR LEU GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 20.44 18.73 19.36 18.15 16.67 13.28 9.66 6.69 3.80 </line>
<line>LEU CA 16.85 14.97 15.61 14.51 13.30 9.95 6.48 3.78 </line>
<line>THR CA 16.44 13.83 13.70 11.84 10.53 6.87 3.80 </line>
<line>GLN CA 14.48 11.63 10.81 9.01 7.04 3.80 </line>
<line>SER CA 13.30 9.87 8.12 5.54 3.80 </line>
<line>ASN CA 12.49 9.05 6.11 3.81 </line>
<line>ALA CA 10.48 6.75 3.81 </line>
<line>CYS CA 7.14 3.81 </line>
<line>MET CA 3.78 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>GLY CA 312</line>
<line>LEU CA 405</line>
<line>THR CA 418</line>
<line>GLN CA 399</line>
<line>SER CA 409</line>
<line>ASN CA 350</line>
<line>ALA CA 401</line>
<line>CYS CA 384</line>
<line>MET CA 416</line>
<line>GLY CA 354</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1GDU</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1GDUA</entryIDChain>
<sequence>QMFCAGVSSGGKDSC</sequence>
<secondary-structure>EEEEE EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 2242 CA GLN A 179 2.662 -13.238 -3.651 1.00 8.06 C </line>
<line>ATOM 2259 CA MET A 180 1.789 -10.471 -6.129 1.00 8.46 C </line>
<line>ATOM 2276 CA PHE A 181 -1.411 -9.578 -7.939 1.00 8.44 C </line>
<line>ATOM 2296 CA CYS A 182 -2.118 -7.031 -10.658 1.00 8.70 C </line>
<line>ATOM 2306 CA ALA A 183 -4.716 -4.342 -11.318 1.00 9.43 C </line>
<line>ATOM 2316 CA GLY A 184 -5.257 -1.788 -14.085 1.00 13.18 C </line>
<line>ATOM 2323 CA VAL A 184A -7.069 -0.833 -17.261 1.00 17.79 C </line>
<line>ATOM 2349 CA SER A 185 -5.683 -2.046 -20.609 1.00 24.24 C </line>
<line>ATOM 2365 CA SER A 186 -5.928 1.448 -22.190 1.00 26.03 C </line>
<line>ATOM 2376 CA GLY A 187 -4.076 3.007 -19.216 1.00 17.40 C </line>
<line>ATOM 2383 CA GLY A 188 -4.884 6.242 -17.423 1.00 15.04 C </line>
<line>ATOM 2390 CA LYS A 188A -5.761 4.960 -13.928 1.00 12.60 C </line>
<line>ATOM 2412 CA ASP A 189 -3.105 3.670 -11.551 1.00 9.66 C </line>
<line>ATOM 2424 CA SER A 190 -1.018 4.085 -8.417 1.00 8.74 C </line>
<line>ATOM 2435 CA CYS A 191 2.288 5.904 -8.826 1.00 9.52 C </line>
</atom-coordinate>
<distance-map>
<line> CYS SER ASP LYS GLY GLY SER SER VAL GLY ALA CYS PHE MET GLN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLN CA 19.83 18.34 19.53 22.53 25.02 23.49 25.16 21.97 20.83 17.40 13.87 10.51 6.95 3.82 </line>
<line>MET CA 16.60 15.00 15.92 18.87 21.25 19.68 21.44 18.34 17.18 13.72 10.33 6.90 3.78 </line>
<line>PHE CA 15.94 13.68 13.84 16.31 18.77 17.11 18.58 15.35 13.98 10.64 7.05 3.79 </line>
<line>CYS CA 13.79 11.39 10.78 12.95 15.15 13.34 14.81 11.69 10.32 7.01 3.80 </line>
<line>ALA CA 12.66 9.65 8.18 9.72 12.22 10.81 12.38 9.62 7.29 3.80 </line>
<line>GLY CA 11.99 9.20 6.39 6.77 8.70 7.12 8.75 6.54 3.78 </line>
<line>VAL CA 14.29 11.79 8.28 6.81 7.41 5.25 5.55 3.82 </line>
<line>SER CA 16.30 14.42 11.02 9.68 8.92 5.48 3.84 </line>
<line>SER CA 16.31 14.86 11.23 8.98 6.84 3.83 </line>
<line>GLY CA 12.52 11.28 7.75 5.88 3.79 </line>
<line>GLY CA 11.20 10.04 6.65 3.82 </line>
<line>LYS CA 9.58 7.32 3.79 </line>
<line>ASP CA 6.44 3.79 </line>
<line>SER CA 3.80 </line>
<line>CYS CA </line>
</distance-map>
<n14>
<line>GLN CA 768</line>
<line>MET CA 882</line>
<line>PHE CA 892</line>
<line>CYS CA 923</line>
<line>ALA CA 918</line>
<line>GLY CA 789</line>
<line>VAL CA 572</line>
<line>SER CA 460</line>
<line>SER CA 339</line>
<line>GLY CA 482</line>
<line>GLY CA 493</line>
<line>LYS CA 659</line>
<line>ASP CA 861</line>
<line>SER CA 941</line>
<line>CYS CA 813</line>
</n14>
</entryChain>
<parallel>
<x>27.11400032043457</x>
<y>42.555999755859375</y>
<z>25.343000411987305</z>
</parallel>
<rotation>
<x>-0.9169999957084656</x>
<y>0.07400000095367432</y>
<z>0.3930000066757202</z>
<x>-0.3970000147819519</x>
<y>-0.05700000002980232</y>
<z>-0.9160000085830688</z>
<x>-0.04600000008940697</x>
<y>-0.9959999918937683</y>
<z>0.08100000023841858</z>
</rotation>
<rmsd>3.2734169960021973</rmsd>
<dmax>6.570568084716797</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1QQ4</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1QQ4A</entryIDChain>
<sequence>LFERL---QPILS</sequence>
<secondary-structure>EE ---HHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 1290 CA LEU A 180 22.325 37.207 17.132 1.00 5.80 C </line>
<line>ATOM 1298 CA PHE A 181 24.228 33.989 17.695 1.00 5.38 C </line>
<line>ATOM 1309 CA GLU A 182 24.934 31.820 20.725 1.00 5.38 C </line>
<line>ATOM 1318 CA ARG A 183 28.685 31.429 21.295 1.00 5.65 C </line>
<line>ATOM 1329 CA LEU A 184 30.026 27.970 20.469 1.00 5.96 C </line>
<line>ATOM 1337 CA GLN A 185 32.595 27.607 23.257 1.00 7.27 C </line>
<line>ATOM 1346 CA PRO A 186 30.093 27.437 26.147 1.00 6.47 C </line>
<line>ATOM 1353 CA ILE A 187 28.032 24.877 24.208 1.00 6.07 C </line>
<line>ATOM 1361 CA LEU A 188 31.049 22.620 23.701 1.00 5.66 C </line>
<line>ATOM 1369 CA SER A 189 32.104 22.690 27.359 1.00 6.33 C </line>
</atom-coordinate>
<distance-map>
<line> SER LEU ILE PRO GLN LEU ARG GLU PHE LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 20.27 18.22 15.32 15.40 15.33 12.48 9.55 6.98 3.78 </line>
<line>PHE CA 16.83 14.56 11.83 12.20 11.90 8.81 6.28 3.79 </line>
<line>GLU CA 13.37 11.44 8.36 8.67 9.10 6.39 3.81 </line>
<line>ARG CA 11.17 9.43 7.20 6.44 5.81 3.80 </line>
<line>LEU CA 8.93 6.33 5.25 5.70 3.81 </line>
<line>GLN CA 6.42 5.24 5.40 3.83 </line>
<line>PRO CA 5.30 5.49 3.82 </line>
<line>ILE CA 5.59 3.80 </line>
<line>LEU CA 3.81 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>LEU CA 507</line>
<line>PHE CA 569</line>
<line>GLU CA 525</line>
<line>ARG CA 478</line>
<line>LEU CA 472</line>
<line>GLN CA 341</line>
<line>PRO CA 322</line>
<line>ILE CA 407</line>
<line>LEU CA 359</line>
<line>SER CA 242</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1GDU</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1GDUA</entryIDChain>
<sequence>VYASVGALRSFID</sequence>
<secondary-structure>EEEEHHHHHHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 2859 CA VAL A 227 1.561 -4.715 -9.185 1.00 7.94 C </line>
<line>ATOM 2875 CA TYR A 228 0.520 -5.202 -5.572 1.00 7.49 C </line>
<line>ATOM 2896 CA ALA A 229 1.808 -7.263 -2.646 1.00 7.93 C </line>
<line>ATOM 2906 CA SER A 230 -0.872 -9.769 -1.667 1.00 9.15 C </line>
<line>ATOM 2917 CA VAL A 231 -2.240 -9.737 1.880 1.00 10.32 C </line>
<line>ATOM 2933 CA GLY A 232 -3.990 -13.084 1.338 1.00 14.43 C </line>
<line>ATOM 2940 CA ALA A 233 -0.663 -14.663 0.416 1.00 11.84 C </line>
<line>ATOM 2950 CA LEU A 234 1.352 -13.076 3.275 1.00 10.93 C </line>
<line>ATOM 2969 CA ARG A 235 -1.200 -13.360 6.094 1.00 11.87 C </line>
<line>ATOM 2993 CA SER A 236 0.909 -15.775 8.196 1.00 12.18 C </line>
<line>ATOM 3004 CA PHE A 237 3.637 -13.135 8.487 1.00 10.73 C </line>
<line>ATOM 3024 CA ILE A 238 1.132 -10.427 9.400 1.00 11.67 C </line>
<line>ATOM 3043 CA ASP A 239 -0.639 -12.518 12.011 1.00 15.06 C </line>
</atom-coordinate>
<distance-map>
<line> ASP ILE PHE SER ARG LEU ALA GLY VAL SER ALA TYR VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 22.69 19.45 19.69 20.61 17.77 15.01 14.00 14.55 12.73 9.38 7.02 3.79 </line>
<line>TYR CA 19.08 15.87 16.44 17.36 14.34 11.87 11.26 11.41 9.15 6.17 3.80 </line>
<line>ALA CA 15.76 12.47 12.72 13.81 11.07 8.31 8.38 9.13 6.56 3.80 </line>
<line>SER CA 13.95 11.27 11.61 11.68 8.56 6.35 5.32 5.45 3.80 </line>
<line>VAL CA 10.63 8.27 9.47 9.29 5.65 5.10 5.38 3.82 </line>
<line>GLY CA 11.20 9.91 10.45 8.85 5.52 5.68 3.80 </line>
<line>ALA CA 11.79 10.09 9.27 8.01 5.85 3.84 </line>
<line>LEU CA 8.98 6.68 5.69 5.63 3.81 </line>
<line>ARG CA 6.00 5.00 5.40 3.83 </line>
<line>SER CA 5.25 5.49 3.81 </line>
<line>PHE CA 5.58 3.80 </line>
<line>ILE CA 3.78 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>VAL CA 1013</line>
<line>TYR CA 1062</line>
<line>ALA CA 1033</line>
<line>SER CA 966</line>
<line>VAL CA 909</line>
<line>GLY CA 679</line>
<line>ALA CA 654</line>
<line>LEU CA 748</line>
<line>ARG CA 654</line>
<line>SER CA 480</line>
<line>PHE CA 592</line>
<line>ILE CA 727</line>
<line>ASP CA 518</line>
</n14>
</entryChain>
<parallel>
<x>27.099000930786133</x>
<y>40.1609992980957</y>
<z>20.667999267578125</z>
</parallel>
<rotation>
<x>-0.8360000252723694</x>
<y>-0.18799999356269836</y>
<z>0.515999972820282</z>
<x>-0.46700000762939453</x>
<y>-0.25200000405311584</y>
<z>-0.8479999899864197</z>
<x>0.289000004529953</x>
<y>-0.9490000009536743</y>
<z>0.12300000339746475</z>
</rotation>
<rmsd>2.252052068710327</rmsd>
<dmax>3.798595905303955</dmax>
</indel>