NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1R1YC-2ZLWD
confEVID 1R1YC-2ZLWD
pdbIDA 1R1Y
pdbIDB 2ZLW
pdbChainA C
pdbChainB D
identity 0.41499999165535
indelSize 1
alignment <alignment>
<seq1>-VLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DLS-----HGSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVAPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR</seq1>
<seq2>VQLSGEEKAAVLALWDKVN--EEEVGGEALGRLLVVYPWTQRFFDSFGDLSNPGAVMGNPKVKAHGKKVLHSFGEGVHHLDNLKGTFAALSELHCDKLHVDPENFRLLGNVLVVVLARHFGKDFTPELQASYQKVVAGVANALAHKYH</seq2>
<ss_1>- HHHHHHHHHHHHGGGHHHHHHHHHHHHHHH GGGG - ----- HHHHHHHHHHHHHHHHHHH GGGHHHH HHHHHHIIIII HHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHH </ss_1>
<ss_2> HHHHHHHHHH --HHHHHHHHHHHHHHH GGG GGG HHHHHHHHHHHHHHHHHGGG HHHHHHHHIIIII HHHHHHHHHHHHHHHHHGGG HHHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2ZLW</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>2ZLWD</entryIDChain>
<sequence>WDKVN--EEEVG</sequence>
<secondary-structure> --HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 3364 CA TRP D 15 -34.693 14.376 22.932 1.00 9.39 C </line>
<line>ATOM 3378 CA ASP D 16 -38.152 15.870 23.251 1.00 14.74 C </line>
<line>ATOM 3386 CA LYS D 17 -39.432 12.308 23.248 1.00 11.42 C </line>
<line>ATOM 3395 CA VAL D 18 -36.675 11.004 25.537 1.00 8.25 C </line>
<line>ATOM 3402 CA ASN D 19 -38.278 10.039 28.858 1.00 20.92 C </line>
<line>ATOM 3410 CA GLU D 20 -35.552 10.733 31.453 1.00 19.36 C </line>
<line>ATOM 3419 CA GLU D 21 -36.596 8.388 34.268 1.00 17.54 C </line>
<line>ATOM 3428 CA GLU D 22 -37.459 5.552 31.900 1.00 16.80 C </line>
<line>ATOM 3437 CA VAL D 23 -34.329 5.859 29.756 1.00 11.40 C </line>
<line>ATOM 3444 CA GLY D 24 -32.072 6.515 32.744 1.00 15.19 C </line>
</atom-coordinate>
<distance-map>
<line> GLY VAL GLU GLU GLU ASN VAL LYS ASP TRP </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TRP CA 12.84 10.92 12.88 12.96 9.31 8.17 4.70 5.18 3.78 </line>
<line>ASP CA 14.65 12.54 13.48 13.41 10.02 8.09 5.58 3.79 </line>
<line>LYS CA 13.34 10.49 11.15 12.04 9.21 6.16 3.81 </line>
<line>VAL CA 9.66 7.06 8.42 9.11 6.03 3.81 </line>
<line>ASN CA 8.13 5.82 5.48 5.90 3.83 </line>
<line>GLU CA 5.62 5.30 5.54 3.81 </line>
<line>GLU CA 5.13 5.65 3.79 </line>
<line>GLU CA 5.54 3.81 </line>
<line>VAL CA 3.80 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>TRP CA 345</line>
<line>ASP CA 234</line>
<line>LYS CA 240</line>
<line>VAL CA 335</line>
<line>ASN CA 287</line>
<line>GLU CA 319</line>
<line>GLU CA 288</line>
<line>GLU CA 310</line>
<line>VAL CA 374</line>
<line>GLY CA 398</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1R1Y</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1R1YC</entryIDChain>
<sequence>WGKVGAHAGEYG</sequence>
<secondary-structure>HHHHGGGHHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 2284 CA TRP C 14 -10.146 31.060 43.793 1.00 32.02 C </line>
<line>ATOM 2298 CA GLY C 15 -12.722 33.833 44.023 1.00 37.49 C </line>
<line>ATOM 2302 CA LYS C 16 -15.524 31.261 43.663 1.00 43.08 C </line>
<line>ATOM 2311 CA VAL C 17 -13.713 29.244 46.338 1.00 38.03 C </line>
<line>ATOM 2318 CA GLY C 18 -14.253 32.152 48.681 1.00 41.02 C </line>
<line>ATOM 2322 CA ALA C 19 -14.908 31.317 52.305 1.00 38.75 C </line>
<line>ATOM 2327 CA HIS C 20 -14.585 27.580 51.595 1.00 40.21 C </line>
<line>ATOM 2337 CA ALA C 21 -10.812 27.818 51.060 1.00 39.33 C </line>
<line>ATOM 2342 CA GLY C 22 -10.002 26.461 54.517 1.00 30.40 C </line>
<line>ATOM 2346 CA GLU C 23 -12.402 23.528 54.218 1.00 33.65 C </line>
<line>ATOM 2355 CA TYR C 24 -10.947 22.785 50.742 1.00 32.52 C </line>
<line>ATOM 2367 CA GLY C 25 -7.464 23.124 52.150 1.00 27.58 C </line>
</atom-coordinate>
<distance-map>
<line> GLY TYR GLU GLY ALA HIS ALA GLY VAL LYS GLY TRP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>TRP CA 11.83 10.84 13.06 11.67 7.99 9.63 9.76 6.48 4.74 5.38 3.79 </line>
<line>GLY CA 14.44 13.05 14.50 13.11 9.45 10.00 8.93 5.18 5.23 3.82 </line>
<line>LYS CA 14.25 11.95 13.45 13.09 9.42 8.79 8.66 5.25 3.81 </line>
<line>VAL CA 10.50 8.29 9.82 9.40 5.72 5.58 6.43 3.77 </line>
<line>GLY CA 11.82 10.14 10.41 9.19 6.02 5.43 3.78 </line>
<line>ALA CA 11.07 9.54 8.40 7.25 5.53 3.82 </line>
<line>HIS CA 8.42 6.08 5.30 5.55 3.82 </line>
<line>ALA CA 5.87 5.04 5.56 3.80 </line>
<line>GLY CA 4.81 5.35 3.80 </line>
<line>GLU CA 5.37 3.84 </line>
<line>TYR CA 3.77 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>TRP CA 404</line>
<line>GLY CA 274</line>
<line>LYS CA 249</line>
<line>VAL CA 320</line>
<line>GLY CA 231</line>
<line>ALA CA 201</line>
<line>HIS CA 258</line>
<line>ALA CA 336</line>
<line>GLY CA 295</line>
<line>GLU CA 313</line>
<line>TYR CA 373</line>
<line>GLY CA 408</line>
</n14>
</entryChain>
<parallel>
<x>-24.658000946044922</x>
<y>-18.38599967956543</y>
<z>-20.606000900268555</z>
</parallel>
<rotation>
<x>0.8429999947547913</x>
<y>0.4050000011920929</y>
<z>0.3529999852180481</z>
<x>-0.43700000643730164</x>
<y>0.8999999761581421</y>
<z>0.009999999776482582</z>
<x>-0.31299999356269836</x>
<y>-0.16300000250339508</y>
<z>0.9359999895095825</z>
</rotation>
<rmsd>1.6425600051879883</rmsd>
<dmax>3.4411439895629883</dmax>
</indel>