NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1RAAA-3GD5A
confEVID 1RAAA-3GD5A
pdbIDA 1RAA
pdbIDB 3GD5
pdbChainA A
pdbChainB A
identity 0.271800011396408
indelSize 3
alignment <alignment>
<seq1>ANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEK----GIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRV--DEIATDVDKTPHAWYFQQAGNGIFARQALLALVLNRDLVL</seq1>
<seq2>--TRFRPDLLSLDDLDEAQLHALLTLAHQLKRGERVANLHGKVLGLVFLKASTRTRVSFTVAMYQLGGQVIDL------------EPVRDTARVLGRYVDGLAIRTFAQTELEEYAHYAG-IPVINALT-DHEHPCQVVADLLTIRENFGRLAGLKLAYVGDG--NNVAHSLLLGCAKVG-MSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDVWTHR---LQLFEQYQ----INAALLNCAAAEAIVLHCLPAHRGEEITDEVMEGPRSRIWDEAENRLHAQKAVLAALMG-----</seq2>
<ss_1> GGG HHHHHHHHHHHHHHHH EEEEEE HHHHHHHHHHHH EEEEEE HHHHHHHHHHHH EEEEEE HHHHHHHHH EE HHHHHHHHHHHHH EEEEE HHHHHHHHHGGG EEEEE HHHHHHHH ---- EEEEE EEE EEGGG HHHH GGGG EEE -- GGG HHHHHHHHHHHHHHHHHHHH </ss_1>
<ss_2>-- GGG HHHHHHHHHHHHHHH EEEEE HHHHHHHHHHHHH EEE ------------ HHHHHHHHHHH EEEEE HHHHHHHHHHH - - HHHHHHHHHHHHH EEEEE -- HHHHHHHHHHH - EEEEE HHHHHHHHHHH EEE HHHH EEEE ---HHHH ---- HHHGGG EEE HHHHH HHHHHHHHHHHHHHHHHHH -----</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1RAA</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1RAAA</entryIDChain>
<sequence>MLDEK----GIAWS</sequence>
<secondary-structure>HHHH ---- EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1537 CA MET A 201 19.344 38.369 17.192 1.00 26.50 C </line>
<line>ATOM 1545 CA LEU A 202 18.352 34.919 16.046 1.00 23.46 C </line>
<line>ATOM 1553 CA ASP A 203 14.749 35.534 17.002 1.00 26.34 C </line>
<line>ATOM 1561 CA GLU A 204 14.513 38.756 15.078 1.00 31.98 C </line>
<line>ATOM 1570 CA LYS A 205 15.455 36.939 11.839 1.00 27.30 C </line>
<line>ATOM 1579 CA GLY A 206 13.039 34.180 12.786 1.00 28.75 C </line>
<line>ATOM 1583 CA ILE A 207 15.782 31.452 12.981 1.00 25.01 C </line>
<line>ATOM 1591 CA ALA A 208 15.036 28.232 14.721 1.00 25.59 C </line>
<line>ATOM 1596 CA TRP A 209 17.169 27.191 17.635 1.00 31.32 C </line>
<line>ATOM 1610 CA SER A 210 17.071 24.963 20.600 1.00 24.34 C </line>
</atom-coordinate>
<distance-map>
<line> SER TRP ALA ILE GLY LYS GLU ASP LEU MET </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>MET CA 14.02 11.40 11.29 8.85 8.76 6.77 5.29 5.40 3.77 </line>
<line>LEU CA 11.02 7.98 7.58 5.29 6.28 5.49 5.51 3.78 </line>
<line>ASP CA 11.41 8.71 7.66 5.82 4.75 5.40 3.76 </line>
<line>GLU CA 15.08 12.14 10.54 7.70 5.33 3.83 </line>
<line>LYS CA 14.93 11.47 9.18 5.61 3.79 </line>
<line>GLY CA 12.74 9.46 6.57 3.87 </line>
<line>ILE CA 10.09 6.46 3.74 </line>
<line>ALA CA 7.03 3.76 </line>
<line>TRP CA 3.71 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>MET CA 247</line>
<line>LEU CA 300</line>
<line>ASP CA 217</line>
<line>GLU CA 172</line>
<line>LYS CA 212</line>
<line>GLY CA 188</line>
<line>ILE CA 286</line>
<line>ALA CA 294</line>
<line>TRP CA 340</line>
<line>SER CA 313</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3GD5</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>3GD5A</entryIDChain>
<sequence>RASEIAGRTGAEVQ</sequence>
<secondary-structure>HHHHHH E</secondary-structure>
<atom-coordinate>
<line>ATOM 1383 CA ARG A 201 46.339 25.426 0.028 1.00 53.48 C </line>
<line>ATOM 1394 CA ALA A 202 45.236 28.929 -0.963 1.00 52.44 C </line>
<line>ATOM 1399 CA SER A 203 47.679 29.018 -3.893 1.00 53.86 C </line>
<line>ATOM 1405 CA GLU A 204 46.537 25.583 -5.058 1.00 59.07 C </line>
<line>ATOM 1414 CA ILE A 205 42.966 26.906 -5.118 1.00 58.19 C </line>
<line>ATOM 1422 CA ALA A 206 44.017 30.111 -6.863 1.00 58.95 C </line>
<line>ATOM 1427 CA GLY A 207 45.685 28.027 -9.544 1.00 62.64 C </line>
<line>ATOM 1431 CA ARG A 208 42.245 26.987 -10.733 1.00 64.19 C </line>
<line>ATOM 1442 CA THR A 209 40.511 30.319 -10.172 1.00 63.33 C </line>
<line>ATOM 1449 CA GLY A 210 43.209 32.431 -11.784 1.00 63.58 C </line>
<line>ATOM 1453 CA ALA A 211 43.862 34.562 -8.704 1.00 62.26 C </line>
<line>ATOM 1458 CA GLU A 212 47.329 35.186 -7.326 1.00 60.44 C </line>
<line>ATOM 1467 CA VAL A 213 48.399 34.673 -3.714 1.00 54.81 C </line>
<line>ATOM 1474 CA GLN A 214 51.306 36.518 -2.122 1.00 55.29 C </line>
</atom-coordinate>
<distance-map>
<line> GLN VAL GLU ALA GLY THR ARG GLY ALA ILE GLU SER ALA ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 12.34 10.19 12.26 12.88 14.09 12.73 11.62 9.94 8.65 6.33 5.09 5.48 3.80 </line>
<line>ALA CA 9.79 7.11 9.17 9.67 11.55 10.44 10.40 8.64 6.14 5.15 5.45 3.82 </line>
<line>SER CA 8.52 5.70 7.07 8.27 9.69 9.62 8.97 6.07 4.84 5.31 3.80 </line>
<line>GLU CA 12.29 9.38 9.90 10.05 10.16 9.21 7.25 5.18 5.49 3.81 </line>
<line>ILE CA 13.07 9.58 9.62 8.50 8.66 6.57 5.66 5.31 3.80 </line>
<line>ALA CA 10.80 7.07 6.08 4.82 5.50 4.83 5.28 3.78 </line>
<line>GLY CA 12.60 9.25 7.67 6.84 5.53 5.69 3.79 </line>
<line>ARG CA 15.72 12.09 10.23 8.01 5.63 3.80 </line>
<line>THR CA 14.82 11.09 8.85 5.60 3.79 </line>
<line>GLY CA 13.25 9.85 6.67 3.80 </line>
<line>ALA CA 10.13 6.75 3.78 </line>
<line>GLU CA 6.68 3.80 </line>
<line>VAL CA 3.79 </line>
<line>GLN CA </line>
</distance-map>
<n14>
<line>ARG CA 289</line>
<line>ALA CA 365</line>
<line>SER CA 288</line>
<line>GLU CA 225</line>
<line>ILE CA 292</line>
<line>ALA CA 296</line>
<line>GLY CA 197</line>
<line>ARG CA 190</line>
<line>THR CA 242</line>
<line>GLY CA 204</line>
<line>ALA CA 290</line>
<line>GLU CA 298</line>
<line>VAL CA 367</line>
<line>GLN CA 375</line>
</n14>
</entryChain>
<parallel>
<x>-29.611000061035156</x>
<y>5.043000221252441</y>
<z>20.058000564575195</z>
</parallel>
<rotation>
<x>-0.3779999911785126</x>
<y>-0.12800000607967377</y>
<z>0.9169999957084656</z>
<x>0.19599999487400055</x>
<y>-0.9789999723434448</y>
<z>-0.0560000017285347</z>
<x>0.9049999713897705</x>
<y>0.1589999943971634</y>
<z>0.39500001072883606</z>
</rotation>
<rmsd>2.190908908843994</rmsd>
<dmax>4.265786170959473</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>3GD5</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>3GD5A</entryIDChain>
<sequence>AHYAG-IPVIN</sequence>
<secondary-structure>HHHH - </secondary-structure>
<atom-coordinate>
<line>ATOM 804 CA ALA A 121 31.536 18.140 15.422 1.00 49.66 C </line>
<line>ATOM 809 CA HIS A 122 32.601 14.521 15.708 1.00 52.00 C </line>
<line>ATOM 819 CA TYR A 123 30.428 13.683 18.740 1.00 47.11 C </line>
<line>ATOM 831 CA ALA A 124 27.547 16.190 18.565 1.00 43.74 C </line>
<line>ATOM 836 CA GLY A 125 25.767 14.471 15.698 1.00 42.42 C </line>
<line>ATOM 840 CA ILE A 126 24.453 17.891 14.697 1.00 38.93 C </line>
<line>ATOM 848 CA PRO A 127 25.758 20.678 12.427 1.00 37.81 C </line>
<line>ATOM 855 CA VAL A 128 28.735 22.479 13.963 1.00 37.40 C </line>
<line>ATOM 862 CA ILE A 129 29.799 25.969 12.905 1.00 34.39 C </line>
<line>ATOM 870 CA ASN A 130 33.148 27.565 13.658 1.00 35.78 C </line>
</atom-coordinate>
<distance-map>
<line> ASN ILE VAL PRO ILE GLY ALA TYR HIS ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 9.72 8.41 5.37 6.99 7.12 6.84 5.44 5.67 3.78 </line>
<line>HIS CA 13.22 12.11 9.02 9.77 8.88 6.83 6.04 3.82 </line>
<line>TYR CA 15.03 13.62 10.15 10.52 8.35 5.62 3.82 </line>
<line>ALA CA 13.60 11.52 7.88 7.81 5.24 3.79 </line>
<line>GLY CA 15.17 12.50 8.71 7.02 3.80 </line>
<line>ILE CA 13.05 9.85 6.32 3.82 </line>
<line>PRO CA 10.18 6.67 3.80 </line>
<line>VAL CA 6.74 3.80 </line>
<line>ILE CA 3.79 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>ALA CA 365</line>
<line>HIS CA 280</line>
<line>TYR CA 269</line>
<line>ALA CA 331</line>
<line>GLY CA 271</line>
<line>ILE CA 343</line>
<line>PRO CA 390</line>
<line>VAL CA 485</line>
<line>ILE CA 544</line>
<line>ASN CA 531</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1RAA</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1RAAA</entryIDChain>
<sequence>TEFSGNVPVLN</sequence>
<secondary-structure>HHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 876 CA THR A 116 42.272 51.235 10.461 1.00 10.53 C </line>
<line>ATOM 883 CA GLU A 117 42.304 54.928 11.468 1.00 14.90 C </line>
<line>ATOM 892 CA PHE A 118 46.014 55.173 11.327 1.00 13.55 C </line>
<line>ATOM 903 CA SER A 119 47.068 52.882 8.346 1.00 14.56 C </line>
<line>ATOM 909 CA GLY A 120 46.448 55.446 5.430 1.00 17.00 C </line>
<line>ATOM 913 CA ASN A 121 45.296 53.378 2.482 1.00 17.69 C </line>
<line>ATOM 921 CA VAL A 122 47.051 50.244 3.871 1.00 9.29 C </line>
<line>ATOM 928 CA PRO A 123 44.375 47.535 4.468 1.00 8.67 C </line>
<line>ATOM 935 CA VAL A 124 44.481 45.944 7.925 1.00 10.93 C </line>
<line>ATOM 942 CA LEU A 125 43.153 42.390 8.513 1.00 7.59 C </line>
<line>ATOM 950 CA ASN A 126 42.129 41.189 11.907 1.00 8.75 C </line>
</atom-coordinate>
<distance-map>
<line> ASN LEU VAL PRO VAL ASN GLY SER PHE GLU THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 10.15 9.10 6.27 7.35 8.20 8.80 7.78 5.49 5.50 3.83 </line>
<line>GLU CA 13.75 12.91 9.90 10.39 10.11 9.60 7.34 6.05 3.72 </line>
<line>PHE CA 14.53 13.40 9.95 10.40 9.00 9.05 5.92 3.90 </line>
<line>SER CA 13.18 11.20 7.42 7.13 5.19 6.15 3.93 </line>
<line>GLY CA 16.24 13.81 10.02 8.23 5.46 3.78 </line>
<line>ASN CA 15.73 12.72 9.25 6.24 3.85 </line>
<line>VAL CA 13.07 9.92 6.44 3.85 </line>
<line>PRO CA 10.03 6.66 3.81 </line>
<line>VAL CA 6.63 3.84 </line>
<line>LEU CA 3.74 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>THR CA 333</line>
<line>GLU CA 236</line>
<line>PHE CA 260</line>
<line>SER CA 313</line>
<line>GLY CA 229</line>
<line>ASN CA 253</line>
<line>VAL CA 345</line>
<line>PRO CA 407</line>
<line>VAL CA 491</line>
<line>LEU CA 549</line>
<line>ASN CA 515</line>
</n14>
</entryChain>
<parallel>
<x>-16.64900016784668</x>
<y>-34.41699981689453</y>
<z>7.739999771118164</z>
</parallel>
<rotation>
<x>-0.6000000238418579</x>
<y>0.10300000011920929</y>
<z>0.7929999828338623</z>
<x>0.02800000086426735</x>
<y>-0.9879999756813049</y>
<z>0.15000000596046448</z>
<x>0.7990000247955322</x>
<y>0.1120000034570694</y>
<z>0.5899999737739563</z>
</rotation>
<rmsd>0.7524129748344421</rmsd>
<dmax>1.1016230583190918</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>3GD5</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>3GD5A</entryIDChain>
<sequence>CAKVG-MSIAV</sequence>
<secondary-structure>HH - EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1223 CA CYS A 177 39.725 35.169 -1.749 1.00 48.02 C </line>
<line>ATOM 1229 CA ALA A 178 41.315 32.424 -3.831 1.00 49.51 C </line>
<line>ATOM 1234 CA LYS A 179 37.983 30.587 -3.961 1.00 49.22 C </line>
<line>ATOM 1243 CA VAL A 180 36.166 33.520 -5.601 1.00 48.71 C </line>
<line>ATOM 1250 CA GLY A 181 39.039 34.431 -7.900 1.00 50.22 C </line>
<line>ATOM 1254 CA MET A 182 40.101 37.452 -5.877 1.00 49.06 C </line>
<line>ATOM 1262 CA SER A 183 43.843 38.062 -5.708 1.00 50.22 C </line>
<line>ATOM 1268 CA ILE A 184 45.262 38.462 -2.218 1.00 46.88 C </line>
<line>ATOM 1276 CA ALA A 185 48.515 39.850 -0.885 1.00 45.72 C </line>
<line>ATOM 1281 CA VAL A 186 49.201 39.331 2.818 1.00 44.24 C </line>
</atom-coordinate>
<distance-map>
<line> VAL ALA ILE SER MET GLY VAL LYS ALA CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 11.31 10.00 6.46 6.40 4.73 6.23 5.50 5.38 3.79 </line>
<line>ALA CA 12.41 10.75 7.39 6.46 5.56 5.08 5.55 3.81 </line>
<line>LYS CA 15.76 14.36 10.86 9.66 7.44 5.60 3.82 </line>
<line>VAL CA 16.57 14.66 10.89 8.92 5.57 3.79 </line>
<line>GLY CA 15.56 12.98 9.34 6.41 3.79 </line>
<line>MET CA 12.73 10.07 6.41 3.80 </line>
<line>SER CA 10.15 6.95 3.79 </line>
<line>ILE CA 6.45 3.78 </line>
<line>ALA CA 3.80 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>CYS CA 543</line>
<line>ALA CA 424</line>
<line>LYS CA 419</line>
<line>VAL CA 410</line>
<line>GLY CA 348</line>
<line>MET CA 420</line>
<line>SER CA 397</line>
<line>ILE CA 485</line>
<line>ALA CA 455</line>
<line>VAL CA 494</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1RAA</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1RAAA</entryIDChain>
<sequence>LAKFDGNRFYF</sequence>
<secondary-structure>GGG EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1333 CA LEU A 176 25.491 31.404 9.337 1.00 12.16 C </line>
<line>ATOM 1341 CA ALA A 177 22.516 33.717 10.016 1.00 15.41 C </line>
<line>ATOM 1346 CA LYS A 178 22.951 35.857 6.844 1.00 22.51 C </line>
<line>ATOM 1355 CA PHE A 179 21.794 32.645 4.957 1.00 21.45 C </line>
<line>ATOM 1366 CA ASP A 180 18.421 30.941 5.012 1.00 29.77 C </line>
<line>ATOM 1374 CA GLY A 181 16.693 28.366 7.055 1.00 20.63 C </line>
<line>ATOM 1378 CA ASN A 182 19.552 27.189 9.261 1.00 18.87 C </line>
<line>ATOM 1386 CA ARG A 183 18.577 25.424 12.510 1.00 18.09 C </line>
<line>ATOM 1397 CA PHE A 184 20.773 25.680 15.550 1.00 15.20 C </line>
<line>ATOM 1408 CA TYR A 185 21.252 23.218 18.480 1.00 12.68 C </line>
<line>ATOM 1420 CA PHE A 186 23.326 24.713 21.340 1.00 12.31 C </line>
</atom-coordinate>
<distance-map>
<line> PHE TYR PHE ARG ASN GLY ASP PHE LYS ALA LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 13.91 12.98 9.68 9.68 7.28 9.58 8.30 5.86 5.70 3.83 </line>
<line>ALA CA 14.49 13.54 9.91 9.51 7.21 8.44 7.04 5.22 3.85 </line>
<line>LYS CA 18.29 17.26 13.57 12.65 9.62 9.76 6.93 3.90 </line>
<line>PHE CA 18.27 16.49 12.72 10.93 7.30 6.98 3.78 </line>
<line>ASP CA 18.15 15.78 12.01 9.31 5.78 3.71 </line>
<line>GLY CA 16.17 13.33 9.80 6.48 3.80 </line>
<line>ASN CA 12.89 10.18 6.58 3.82 </line>
<line>ARG CA 10.05 6.90 3.76 </line>
<line>PHE CA 6.40 3.86 </line>
<line>TYR CA 3.84 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>LEU CA 506</line>
<line>ALA CA 414</line>
<line>LYS CA 342</line>
<line>PHE CA 327</line>
<line>ASP CA 262</line>
<line>GLY CA 262</line>
<line>ASN CA 370</line>
<line>ARG CA 380</line>
<line>PHE CA 457</line>
<line>TYR CA 426</line>
<line>PHE CA 456</line>
</n14>
</entryChain>
<parallel>
<x>19.170000076293945</x>
<y>4.656000137329102</y>
<z>-13.791999816894531</z>
</parallel>
<rotation>
<x>-0.42100000381469727</x>
<y>0.04699999839067459</y>
<z>0.906000018119812</z>
<x>-0.041999999433755875</x>
<y>-0.9990000128746033</y>
<z>0.03200000151991844</z>
<x>0.906000018119812</x>
<y>-0.02500000037252903</y>
<z>0.4230000078678131</z>
</rotation>
<rmsd>1.4997739791870117</rmsd>
<dmax>1.9155830144882202</dmax>
</indel>