NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1S8GA-2NOTA
confEVID 1S8GA-2NOTA
pdbIDA 1S8G
pdbIDB 2NOT
pdbChainA A
pdbChainB A
identity 0.270500004291534
indelSize 3
alignment <alignment>
<seq1>SLLELGKMILQETG--KNAITSYGSYGCNCGWGHRGQPKDATDRCCFVHKCCYKKLTDCNHK--TDRYSYSWKNKAIICEEK-NPCLKEMCECDKAVAICLRENLDTYNKKYKAYFKFKCKKPETC</seq1>
<seq2>NLVQFSYLIQCANHGRRPT-RHYMDYGCYCGWGGSGTPVDELDRCCKIHDDCYSDAEKKGCSPKMSAYDYYCGENGPYCRNIKKKCLRFVCDCDVEAAFCFAKA--PYNNANWNIDTKKRCQ----</seq2>
<ss_1> HHHHHHHHH -- HHHHH HHHHHHHHHHHHHH EEE-- EEE EEE - HHHHHHHHHHHHHHHHHHH GGG GGG </ss_1>
<ss_2> HHHHHHHHHH -HHHH HHHHHHHHHHHHHHHHH HHHH EEE EEE HHHHHHHHHHHHHHHHHHH -- GGG HHHH ----</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1S8G</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1S8GA</entryIDChain>
<sequence>DCNHK--TDRYS</sequence>
<secondary-structure> EEE-- E</secondary-structure>
<atom-coordinate>
<line>ATOM 425 CA ASP A 59 4.387 25.012 -1.106 1.00 43.11 C </line>
<line>ATOM 433 CA CYS A 61 7.470 26.255 -2.978 1.00 42.45 C </line>
<line>ATOM 439 CA ASN A 67 11.302 26.131 -3.019 1.00 43.05 C </line>
<line>ATOM 447 CA HIS A 68 13.384 28.999 -1.631 1.00 44.08 C </line>
<line>ATOM 457 CA LYS A 69 16.492 27.887 -3.535 1.00 44.33 C </line>
<line>ATOM 466 CA THR A 70 15.179 27.323 -7.068 1.00 43.61 C </line>
<line>ATOM 473 CA ASP A 71 11.796 29.039 -7.547 1.00 43.10 C </line>
<line>ATOM 481 CA ARG A 72 12.091 32.531 -8.988 1.00 43.57 C </line>
<line>ATOM 492 CA TYR A 73 9.675 35.368 -8.233 1.00 43.21 C </line>
<line>ATOM 504 CA SER A 74 8.955 38.888 -9.509 1.00 43.55 C </line>
</atom-coordinate>
<distance-map>
<line> SER TYR ARG ASP THR LYS HIS ASN CYS ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 16.85 13.64 13.34 10.61 12.54 12.68 9.85 7.26 3.82 </line>
<line>CYS CA 14.30 10.75 9.84 6.88 8.79 9.19 6.66 3.83 </line>
<line>ASN CA 14.50 10.73 8.79 5.40 5.73 5.50 3.81 </line>
<line>HIS CA 13.40 9.89 8.26 6.13 5.97 3.81 </line>
<line>LYS CA 14.61 11.16 8.41 6.28 3.81 </line>
<line>THR CA 13.36 9.82 6.35 3.82 </line>
<line>ASP CA 10.44 6.71 3.79 </line>
<line>ARG CA 7.11 3.80 </line>
<line>TYR CA 3.81 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>ASP CA 176</line>
<line>CYS CA 230</line>
<line>ASN CA 251</line>
<line>HIS CA 323</line>
<line>LYS CA 277</line>
<line>THR CA 197</line>
<line>ASP CA 253</line>
<line>ARG CA 282</line>
<line>TYR CA 310</line>
<line>SER CA 284</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2NOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2NOTA</entryIDChain>
<sequence>KKGCSPKMSAYD</sequence>
<secondary-structure> HHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 448 CA LYS A 57 -2.556 19.164 43.522 1.00 2.33 C </line>
<line>ATOM 457 CA LYS A 59 -2.467 21.275 40.298 1.00 2.00 C </line>
<line>ATOM 466 CA GLY A 60 -5.399 19.295 38.860 1.00 2.00 C </line>
<line>ATOM 470 CA CYS A 61 -3.214 17.052 36.722 1.00 2.00 C </line>
<line>ATOM 476 CA SER A 67 -4.165 13.354 36.918 1.00 5.61 C </line>
<line>ATOM 482 CA PRO A 68 -0.869 11.496 36.172 1.00 4.23 C </line>
<line>ATOM 489 CA LYS A 69 -2.915 8.416 35.297 1.00 11.82 C </line>
<line>ATOM 498 CA MET A 70 -5.278 10.186 32.885 1.00 20.43 C </line>
<line>ATOM 506 CA SER A 71 -2.610 12.470 31.288 1.00 7.12 C </line>
<line>ATOM 512 CA ALA A 72 -1.671 11.215 27.801 1.00 3.72 C </line>
<line>ATOM 517 CA TYR A 73 1.079 13.607 26.784 1.00 2.00 C </line>
<line>ATOM 529 CA ASP A 74 3.395 14.130 23.825 1.00 2.00 C </line>
</atom-coordinate>
<distance-map>
<line> ASP TYR ALA SER MET LYS PRO SER CYS GLY LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 21.18 18.01 17.64 13.95 14.18 13.54 10.75 8.94 7.15 5.46 3.85 </line>
<line>LYS CA 18.89 15.94 16.06 12.60 13.63 13.80 10.73 8.78 5.58 3.82 </line>
<line>GLY CA 18.17 14.84 14.19 10.57 10.89 11.71 9.41 6.37 3.79 </line>
<line>CYS CA 14.78 11.36 10.77 7.13 8.13 8.76 6.06 3.82 </line>
<line>SER CA 15.14 11.41 9.69 5.91 5.25 5.35 3.86 </line>
<line>PRO CA 13.33 9.82 8.41 5.28 5.65 3.80 </line>
<line>LYS CA 14.29 10.74 8.10 5.71 3.81 </line>
<line>MET CA 13.15 9.45 6.32 3.86 </line>
<line>SER CA 9.72 5.93 3.82 </line>
<line>ALA CA 7.07 3.78 </line>
<line>TYR CA 3.79 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>LYS CA 147</line>
<line>LYS CA 167</line>
<line>GLY CA 168</line>
<line>CYS CA 246</line>
<line>SER CA 258</line>
<line>PRO CA 321</line>
<line>LYS CA 267</line>
<line>MET CA 220</line>
<line>SER CA 300</line>
<line>ALA CA 276</line>
<line>TYR CA 321</line>
<line>ASP CA 287</line>
</n14>
</entryChain>
<parallel>
<x>14.932999610900879</x>
<y>12.395999908447266</y>
<z>-40.520999908447266</z>
</parallel>
<rotation>
<x>-0.7480000257492065</x>
<y>0.023000000044703484</y>
<z>-0.6629999876022339</z>
<x>-0.5950000286102295</x>
<y>0.4169999957084656</y>
<z>0.6869999766349792</z>
<x>-0.2919999957084656</x>
<y>-0.9089999794960022</y>
<z>0.2980000078678131</z>
</rotation>
<rmsd>3.480146884918213</rmsd>
<dmax>4.152813911437988</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1S8G</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1S8GA</entryIDChain>
<sequence>ICEEK-NPCLK</sequence>
<secondary-structure>E - HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 581 CA ILE A 83 8.703 45.878 -3.847 1.00 45.35 C </line>
<line>ATOM 589 CA CYS A 84 7.432 42.288 -4.082 1.00 45.44 C </line>
<line>ATOM 595 CA GLU A 86 5.273 42.006 -7.222 1.00 46.90 C </line>
<line>ATOM 604 CA GLU A 87 4.602 38.271 -6.881 1.00 46.79 C </line>
<line>ATOM 613 CA LYS A 88 1.073 36.877 -6.987 1.00 46.14 C </line>
<line>ATOM 622 CA ASN A 89 1.893 33.231 -6.127 1.00 44.55 C </line>
<line>ATOM 630 CA PRO A 90 1.248 33.212 -2.333 1.00 42.88 C </line>
<line>ATOM 637 CA CYS A 91 4.274 31.058 -1.378 1.00 41.59 C </line>
<line>ATOM 643 CA LEU A 92 6.657 32.881 -3.725 1.00 41.32 C </line>
<line>ATOM 651 CA LYS A 93 5.288 36.135 -2.270 1.00 41.59 C </line>
</atom-coordinate>
<distance-map>
<line> LYS LEU CYS PRO ASN LYS GLU GLU CYS ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 10.44 13.16 15.66 14.77 14.54 12.21 9.16 6.18 3.82 </line>
<line>CYS CA 6.76 9.45 11.97 11.12 10.81 8.84 5.66 3.82 </line>
<line>GLU CA 7.68 9.87 12.45 10.84 9.47 6.63 3.81 </line>
<line>GLU CA 5.13 6.58 9.08 7.58 5.77 3.80 </line>
<line>LYS CA 6.37 7.60 8.69 5.93 3.83 </line>
<line>ASN CA 5.90 5.35 5.74 3.85 </line>
<line>PRO CA 4.99 5.60 3.84 </line>
<line>CYS CA 5.25 3.81 </line>
<line>LEU CA 3.82 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>ILE CA 267</line>
<line>CYS CA 305</line>
<line>GLU CA 229</line>
<line>GLU CA 240</line>
<line>LYS CA 170</line>
<line>ASN CA 195</line>
<line>PRO CA 200</line>
<line>CYS CA 256</line>
<line>LEU CA 311</line>
<line>LYS CA 303</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2NOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2NOTA</entryIDChain>
<sequence>YCRNIKKKCLR</sequence>
<secondary-structure>E HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 599 CA TYR A 83 12.025 14.652 25.615 1.00 2.00 C </line>
<line>ATOM 611 CA CYS A 84 8.703 16.412 26.107 1.00 2.00 C </line>
<line>ATOM 617 CA ARG A 85 6.963 18.363 23.377 1.00 5.31 C </line>
<line>ATOM 628 CA ASN A 86 4.109 20.093 25.261 1.00 3.46 C </line>
<line>ATOM 636 CA ILE A 87 4.442 23.825 25.984 1.00 2.00 C </line>
<line>ATOM 644 CA LYS A 88 0.857 25.103 26.105 1.00 10.64 C </line>
<line>ATOM 653 CA LYS A 89 -1.077 22.111 27.532 1.00 3.56 C </line>
<line>ATOM 662 CA LYS A 90 0.469 22.679 30.983 1.00 3.71 C </line>
<line>ATOM 671 CA CYS A 91 -0.675 19.578 32.934 1.00 4.58 C </line>
<line>ATOM 677 CA LEU A 92 0.513 17.277 30.127 1.00 2.00 C </line>
<line>ATOM 685 CA ARG A 93 3.949 18.922 30.198 1.00 2.00 C </line>
</atom-coordinate>
<distance-map>
<line> ARG LEU CYS LYS LYS LYS ILE ASN ARG CYS TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 10.22 12.64 15.46 15.06 15.20 15.30 11.91 9.61 6.66 3.79 </line>
<line>CYS CA 6.76 9.16 12.02 11.44 11.41 11.71 8.55 5.95 3.78 </line>
<line>ARG CA 7.48 9.40 12.29 10.89 9.80 9.49 6.56 3.83 </line>
<line>ASN CA 5.08 6.67 9.06 7.26 6.01 6.03 3.82 </line>
<line>ILE CA 6.48 8.69 9.62 6.49 5.98 3.81 </line>
<line>LYS CA 8.03 8.81 8.92 5.46 3.84 </line>
<line>LYS CA 6.52 5.71 5.98 3.82 </line>
<line>LYS CA 5.18 5.47 3.84 </line>
<line>CYS CA 5.41 3.82 </line>
<line>LEU CA 3.81 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>TYR CA 305</line>
<line>CYS CA 309</line>
<line>ARG CA 237</line>
<line>ASN CA 221</line>
<line>ILE CA 168</line>
<line>LYS CA 133</line>
<line>LYS CA 189</line>
<line>LYS CA 215</line>
<line>CYS CA 276</line>
<line>LEU CA 315</line>
<line>ARG CA 319</line>
</n14>
</entryChain>
<parallel>
<x>-0.057999998331069946</x>
<y>18.13800048828125</y>
<z>-32.08100128173828</z>
</parallel>
<rotation>
<x>-0.09000000357627869</x>
<y>0.9520000219345093</y>
<z>0.2919999957084656</z>
<x>-0.9909999966621399</x>
<y>-0.05700000002980232</y>
<z>-0.12099999934434891</z>
<x>-0.09799999743700027</x>
<y>-0.30000001192092896</y>
<z>0.9490000009536743</z>
</rotation>
<rmsd>0.776593029499054</rmsd>
<dmax>1.4641040563583374</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2NOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2NOTA</entryIDChain>
<sequence>CFAKA--PYNNA</sequence>
<secondary-structure>HHHH -- GG</secondary-structure>
<atom-coordinate>
<line>ATOM 779 CA CYS A 105 17.365 8.881 36.705 1.00 2.00 C </line>
<line>ATOM 785 CA PHE A 106 16.671 5.115 36.514 1.00 2.00 C </line>
<line>ATOM 796 CA ALA A 107 19.189 4.693 33.684 1.00 5.40 C </line>
<line>ATOM 801 CA LYS A 108 22.046 6.687 35.174 1.00 6.66 C </line>
<line>ATOM 810 CA ALA A 109 21.458 5.127 38.617 1.00 2.00 C </line>
<line>ATOM 815 CA PRO A 110 23.196 1.856 39.636 1.00 2.00 C </line>
<line>ATOM 822 CA TYR A 111 21.020 -1.165 40.048 1.00 2.00 C </line>
<line>ATOM 834 CA ASN A 112 21.683 -3.308 43.127 1.00 2.00 C </line>
<line>ATOM 842 CA ASN A 113 20.080 -6.685 42.302 1.00 2.00 C </line>
<line>ATOM 850 CA ALA A 114 20.191 -7.202 46.080 1.00 4.99 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ASN ASN TYR PRO ALA LYS ALA PHE CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 18.83 16.76 14.44 11.20 9.59 5.87 5.39 5.48 3.83 </line>
<line>PHE CA 15.99 13.58 11.82 8.42 7.93 5.23 5.76 3.81 </line>
<line>ALA CA 17.21 14.30 12.63 8.84 7.72 5.45 3.79 </line>
<line>LYS CA 17.76 15.28 12.78 9.30 6.68 3.83 </line>
<line>ALA CA 14.47 12.45 9.57 6.47 3.84 </line>
<line>PRO CA 11.52 9.47 6.41 3.75 </line>
<line>TYR CA 8.57 6.04 3.81 </line>
<line>ASN CA 5.11 3.83 </line>
<line>ASN CA 3.81 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>CYS CA 363</line>
<line>PHE CA 434</line>
<line>ALA CA 342</line>
<line>LYS CA 272</line>
<line>ALA CA 292</line>
<line>PRO CA 255</line>
<line>TYR CA 299</line>
<line>ASN CA 255</line>
<line>ASN CA 229</line>
<line>ALA CA 202</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1S8G</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1S8GA</entryIDChain>
<sequence>CLRENLDTYNKK</sequence>
<secondary-structure>HHHH GG</secondary-structure>
<atom-coordinate>
<line>ATOM 740 CA CYS A 105 18.151 43.952 7.992 1.00 42.22 C </line>
<line>ATOM 746 CA LEU A 106 21.729 43.367 6.804 1.00 42.84 C </line>
<line>ATOM 754 CA ARG A 107 21.881 46.919 5.425 1.00 44.03 C </line>
<line>ATOM 765 CA GLU A 108 20.794 48.267 8.823 1.00 45.79 C </line>
<line>ATOM 774 CA ASN A 109 23.571 46.355 10.592 1.00 47.87 C </line>
<line>ATOM 782 CA LEU A 110 26.409 47.332 8.235 1.00 49.79 C </line>
<line>ATOM 790 CA ASP A 111 27.672 49.497 11.138 1.00 52.06 C </line>
<line>ATOM 798 CA THR A 112 28.597 46.384 13.189 1.00 53.39 C </line>
<line>ATOM 805 CA TYR A 113 29.563 44.160 10.210 1.00 54.63 C </line>
<line>ATOM 817 CA ASN A 114 32.911 42.468 10.972 1.00 56.08 C </line>
<line>ATOM 825 CA LYS A 115 35.187 40.754 8.416 1.00 57.45 C </line>
<line>ATOM 834 CA LYS A 116 36.384 38.258 11.078 1.00 58.16 C </line>
</atom-coordinate>
<distance-map>
<line> LYS LYS ASN TYR THR ASP LEU ASN GLU ARG LEU CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 19.35 17.34 15.13 11.63 11.92 11.46 8.93 6.47 5.13 5.41 3.82 </line>
<line>LEU CA 16.10 13.80 11.97 8.58 9.85 9.57 6.30 5.16 5.38 3.81 </line>
<line>ARG CA 17.81 14.97 13.12 9.46 10.28 8.53 5.35 5.47 3.81 </line>
<line>GLU CA 18.66 16.24 13.60 9.78 9.14 7.36 5.72 3.81 </line>
<line>ASN CA 15.16 13.08 10.12 6.39 5.66 5.20 3.82 </line>
<line>LEU CA 13.78 10.97 8.57 4.89 5.50 3.84 </line>
<line>ASP CA 14.22 11.85 8.77 5.74 3.84 </line>
<line>THR CA 11.45 9.89 6.23 3.84 </line>
<line>TYR CA 9.06 6.82 3.83 </line>
<line>ASN CA 5.46 3.83 </line>
<line>LYS CA 3.84 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>CYS CA 354</line>
<line>LEU CA 401</line>
<line>ARG CA 325</line>
<line>GLU CA 245</line>
<line>ASN CA 275</line>
<line>LEU CA 283</line>
<line>ASP CA 189</line>
<line>THR CA 226</line>
<line>TYR CA 312</line>
<line>ASN CA 258</line>
<line>LYS CA 242</line>
<line>LYS CA 216</line>
</n14>
</entryChain>
<parallel>
<x>-4.321000099182129</x>
<y>-41.74800109863281</y>
<z>28.687000274658203</z>
</parallel>
<rotation>
<x>0.24899999797344208</x>
<y>-0.9419999718666077</y>
<z>0.22699999809265137</z>
<x>0.7820000052452087</x>
<y>0.05700000002980232</y>
<z>-0.6200000047683716</z>
<x>0.5709999799728394</x>
<y>0.3319999873638153</y>
<z>0.7509999871253967</z>
</rotation>
<rmsd>0.9283509850502014</rmsd>
<dmax>2.0455479621887207</dmax>
</indel>