NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1SAWA-2DFUA
confEVID 1SAWA-2DFUA
pdbIDA 1SAW
pdbIDB 2DFU
pdbChainA A
pdbChainB A
identity 0.393700003623962
indelSize 3
alignment <alignment>
<seq1>---------------------------------RPLS----RFWEWGKNIVCVGRNYA--SEPVLFLKPSTAYAPEG---------SPILMPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKIITLEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMTFKVEKPEY---</seq1>
<seq2>MKILRFNEGRWGVLEGELVLETDGPGGNPTGRRYDLASVTLLPPATPTKIVCVGRNYRLPKEPGLFLKGPNALARPGNPRDPWGTAEPVPYPFFTEELHYEGELAVVVGDRMRHVPPEKALDHVLGYTVAVDITARDVQKKD----LQWVRAKSADKFLPLGP--WLETDLNPQDTWVRTYVNGTLRQEGHTSQMIFSVAEILSYISTFMTLEPLDVVLTGTPEGVGALRPGDRLEVAVEGVGTLFTLIGPKEERPW</seq2>
<ss_1>--------------------------------- ---- HHHH EEEEE -- EEEEEEE --------- EEEEEEEEEEE GGG EEEEEE HHHHHHHHH HHHH EEE EEEEEEE EEEGG HHHHHHHHH EEEE EEE EEEEEEE EEEEEEEE ---</ss_1>
<ss_2> EEEEE EEEEEEEEEEEEE EEEEEGG EEE EEE EEEEE EEEEEEEEEEEE GGG EEEEE EE HHHH ---- HHHH -- EE EEEEEEE EEEEEGG HHHHHHHH EEEE EEEEEEE EEEEEEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1SAW</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1SAWA</entryIDChain>
<sequence>GRNYA--SEPVL</sequence>
<secondary-structure> -- EE</secondary-structure>
<atom-coordinate>
<line>ATOM 132 CA GLY A 24 38.553 36.400 18.351 1.00 21.39 C </line>
<line>ATOM 136 CA ARG A 25 38.676 39.074 15.682 1.00 21.65 C </line>
<line>ATOM 144 CA ASN A 26 41.968 39.834 13.927 1.00 19.74 C </line>
<line>ATOM 152 CA TYR A 27 40.843 41.020 10.473 1.00 20.59 C </line>
<line>ATOM 164 CA ALA A 28 38.864 44.114 9.392 1.00 21.90 C </line>
<line>ATOM 169 CA SER A 40 42.432 47.333 21.534 1.00 22.21 C </line>
<line>ATOM 174 CA GLU A 41 43.601 43.910 22.748 1.00 21.81 C </line>
<line>ATOM 183 CA PRO A 42 42.954 40.430 21.320 1.00 19.14 C </line>
<line>ATOM 190 CA VAL A 43 39.989 38.440 22.559 1.00 16.27 C </line>
<line>ATOM 197 CA LEU A 44 41.074 34.939 23.613 1.00 13.84 C </line>
</atom-coordinate>
<distance-map>
<line> LEU VAL PRO GLU SER ALA TYR ASN ARG GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 6.01 4.89 6.67 10.06 12.03 11.83 9.42 6.56 3.78 </line>
<line>ARG CA 9.26 7.03 7.21 9.88 10.80 8.06 5.97 3.81 </line>
<line>ASN CA 10.89 8.96 7.48 9.85 10.69 6.97 3.82 </line>
<line>TYR CA 14.48 12.39 11.07 12.91 12.83 3.83 </line>
<line>ALA CA 17.07 14.38 13.14 14.17 13.06 </line>
<line>SER CA 12.64 9.28 6.93 3.82 </line>
<line>GLU CA 9.36 6.56 3.82 </line>
<line>PRO CA 6.24 3.78 </line>
<line>VAL CA 3.81 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>GLY CA 405</line>
<line>ARG CA 336</line>
<line>ASN CA 359</line>
<line>TYR CA 294</line>
<line>ALA CA 183</line>
<line>SER CA 138</line>
<line>GLU CA 210</line>
<line>PRO CA 308</line>
<line>VAL CA 318</line>
<line>LEU CA 368</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2DFU</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2DFUA</entryIDChain>
<sequence>GRNYRLPKEPGL</sequence>
<secondary-structure> EE</secondary-structure>
<atom-coordinate>
<line>ATOM 404 CA GLY A 54 32.090 27.242 -16.432 1.00 37.85 C </line>
<line>ATOM 408 CA ARG A 55 33.918 24.701 -18.583 1.00 43.07 C </line>
<line>ATOM 419 CA ASN A 56 32.145 21.360 -18.223 1.00 41.31 C </line>
<line>ATOM 427 CA TYR A 57 32.271 19.453 -21.508 1.00 48.98 C </line>
<line>ATOM 439 CA ARG A 58 35.099 17.381 -22.992 1.00 58.05 C </line>
<line>ATOM 450 CA LEU A 72 40.615 20.523 -17.247 1.00 70.56 C </line>
<line>ATOM 458 CA PRO A 73 39.517 22.090 -13.923 1.00 66.35 C </line>
<line>ATOM 465 CA LYS A 74 39.739 20.177 -10.631 1.00 62.29 C </line>
<line>ATOM 474 CA GLU A 75 36.618 21.816 -9.192 1.00 54.00 C </line>
<line>ATOM 483 CA PRO A 76 33.581 23.272 -10.980 1.00 44.02 C </line>
<line>ATOM 490 CA GLY A 77 34.230 26.909 -11.880 1.00 38.62 C </line>
<line>ATOM 494 CA LEU A 78 31.201 28.988 -10.877 1.00 33.89 C </line>
</atom-coordinate>
<distance-map>
<line> LEU GLY PRO GLU LYS PRO LEU ARG TYR ASN ARG GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 5.89 5.04 6.91 10.12 11.92 9.38 10.89 12.22 9.30 6.15 3.80 </line>
<line>ARG CA 9.23 7.06 7.74 10.19 10.84 7.74 8.01 8.63 6.23 3.80 </line>
<line>ASN CA 10.63 8.68 7.63 10.09 10.80 8.57 8.57 6.88 3.80 </line>
<line>TYR CA 14.32 12.33 11.28 13.27 13.21 10.82 9.43 3.81 </line>
<line>ARG CA 17.22 14.66 13.46 14.57 13.50 11.13 8.56 </line>
<line>LEU CA 14.17 10.50 9.81 9.08 6.68 3.84 </line>
<line>PRO CA 11.23 7.44 6.73 5.56 3.81 </line>
<line>LYS CA 12.27 8.79 6.90 3.81 </line>
<line>GLU CA 9.14 6.23 3.81 </line>
<line>PRO CA 6.19 3.80 </line>
<line>GLY CA 3.81 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>GLY CA 401</line>
<line>ARG CA 343</line>
<line>ASN CA 379</line>
<line>TYR CA 341</line>
<line>ARG CA 236</line>
<line>LEU CA 141</line>
<line>PRO CA 171</line>
<line>LYS CA 161</line>
<line>GLU CA 232</line>
<line>PRO CA 322</line>
<line>GLY CA 320</line>
<line>LEU CA 372</line>
</n14>
</entryChain>
<parallel>
<x>6.553999900817871</x>
<y>19.589000701904297</y>
<z>32.74599838256836</z>
</parallel>
<rotation>
<x>-0.5609999895095825</x>
<y>0.7749999761581421</y>
<z>0.2919999957084656</z>
<x>-0.6060000061988831</x>
<y>-0.6240000128746033</y>
<z>0.49300000071525574</z>
<x>0.5640000104904175</x>
<y>0.10000000149011612</y>
<z>0.8199999928474426</z>
</rotation>
<rmsd>0.48662498593330383</rmsd>
<dmax>0.7419379949569702</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2DFU</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2DFUA</entryIDChain>
<sequence>VQKKD----LQWVR</sequence>
<secondary-structure>HHHH ---- HH</secondary-structure>
<atom-coordinate>
<line>ATOM 1068 CA VAL A 151 33.694 42.977 -21.254 1.00 38.98 C </line>
<line>ATOM 1075 CA GLN A 152 34.132 39.482 -19.814 1.00 41.53 C </line>
<line>ATOM 1084 CA LYS A 153 37.872 39.894 -20.353 1.00 45.88 C </line>
<line>ATOM 1093 CA LYS A 154 38.225 43.468 -19.071 1.00 47.72 C </line>
<line>ATOM 1102 CA ASP A 155 35.757 43.936 -16.164 1.00 43.31 C </line>
<line>ATOM 1110 CA LEU A 156 36.520 43.013 -12.547 1.00 40.51 C </line>
<line>ATOM 1118 CA GLN A 157 33.962 40.186 -12.616 1.00 37.06 C </line>
<line>ATOM 1127 CA TRP A 158 31.535 38.762 -15.190 1.00 33.21 C </line>
<line>ATOM 1141 CA VAL A 159 28.625 40.904 -14.031 1.00 33.59 C </line>
<line>ATOM 1148 CA ARG A 160 27.684 42.642 -17.255 1.00 36.99 C </line>
</atom-coordinate>
<distance-map>
<line> ARG VAL TRP GLN LEU ASP LYS LYS GLN VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 7.23 9.06 7.69 9.08 9.15 5.58 5.05 5.27 3.81 </line>
<line>GLN CA 7.62 8.11 5.35 7.23 8.42 5.98 5.76 3.80 </line>
<line>LYS CA 11.00 11.25 8.25 8.67 8.51 6.19 3.81 </line>
<line>LYS CA 10.73 11.14 9.05 8.40 6.76 3.84 </line>
<line>ASP CA 8.25 8.04 6.75 5.47 3.81 </line>
<line>LEU CA 10.02 8.31 7.06 3.81 </line>
<line>GLN CA 8.18 5.57 3.81 </line>
<line>TRP CA 5.84 3.79 </line>
<line>VAL CA 3.78 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>VAL CA 261</line>
<line>GLN CA 280</line>
<line>LYS CA 197</line>
<line>LYS CA 167</line>
<line>ASP CA 176</line>
<line>LEU CA 145</line>
<line>GLN CA 207</line>
<line>TRP CA 304</line>
<line>VAL CA 298</line>
<line>ARG CA 349</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1SAW</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1SAWA</entryIDChain>
<sequence>VQDECKKKGLPWTL</sequence>
<secondary-structure>HHHHHHH HH</secondary-structure>
<atom-coordinate>
<line>ATOM 677 CA VAL A 108 25.007 29.412 19.960 1.00 13.93 C </line>
<line>ATOM 684 CA GLN A 109 27.646 32.194 19.950 1.00 13.77 C </line>
<line>ATOM 693 CA ASP A 110 25.096 34.979 19.446 1.00 14.70 C </line>
<line>ATOM 701 CA GLU A 111 23.191 33.668 22.509 1.00 15.37 C </line>
<line>ATOM 706 CA CYS A 112 26.419 33.488 24.610 1.00 16.83 C </line>
<line>ATOM 712 CA LYS A 113 27.294 37.115 23.864 1.00 17.40 C </line>
<line>ATOM 721 CA LYS A 114 23.723 38.079 24.827 1.00 17.38 C </line>
<line>ATOM 727 CA LYS A 115 23.712 36.216 28.161 1.00 16.93 C </line>
<line>ATOM 733 CA GLY A 116 27.312 36.677 29.317 1.00 15.88 C </line>
<line>ATOM 737 CA LEU A 117 27.933 32.934 28.940 1.00 13.53 C </line>
<line>ATOM 745 CA PRO A 118 31.201 31.189 28.089 1.00 12.30 C </line>
<line>ATOM 752 CA TRP A 119 31.732 30.411 24.398 1.00 11.32 C </line>
<line>ATOM 766 CA THR A 120 32.379 26.661 24.916 1.00 10.94 C </line>
<line>ATOM 773 CA LEU A 121 29.424 25.116 23.040 1.00 12.28 C </line>
</atom-coordinate>
<distance-map>
<line> LEU THR TRP PRO LEU GLY LYS LYS LYS CYS GLU ASP GLN VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 6.89 9.30 8.12 10.37 10.08 12.07 10.73 10.02 8.93 6.34 5.28 5.59 3.83 </line>
<line>GLN CA 7.93 8.81 6.30 8.94 9.02 10.39 9.95 8.59 6.30 4.99 5.34 3.81 </line>
<line>ASP CA 11.35 12.33 9.46 11.24 10.12 10.26 8.91 6.36 5.38 5.54 3.84 </line>
<line>GLU CA 10.60 11.80 9.33 10.07 8.02 8.51 6.22 5.01 5.53 3.86 </line>
<line>CYS CA 9.03 9.07 6.14 6.34 4.62 5.76 5.23 5.33 3.80 </line>
<line>LYS CA 12.21 11.67 8.06 8.26 6.61 5.47 5.67 3.82 </line>
<line>LYS CA 14.27 14.33 11.10 10.68 7.82 5.92 3.82 </line>
<line>LYS CA 13.49 13.30 10.59 9.02 5.40 3.81 </line>
<line>GLY CA 13.32 12.06 9.11 6.84 3.81 </line>
<line>LEU CA 9.91 8.68 6.44 3.80 </line>
<line>PRO CA 8.10 5.65 3.81 </line>
<line>TRP CA 5.93 3.84 </line>
<line>THR CA 3.83 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>VAL CA 271</line>
<line>GLN CA 306</line>
<line>ASP CA 221</line>
<line>GLU CA 188</line>
<line>CYS CA 193</line>
<line>LYS CA 176</line>
<line>LYS CA 112</line>
<line>LYS CA 111</line>
<line>GLY CA 117</line>
<line>LEU CA 152</line>
<line>PRO CA 211</line>
<line>TRP CA 294</line>
<line>THR CA 317</line>
<line>LEU CA 323</line>
</n14>
</entryChain>
<parallel>
<x>7.934000015258789</x>
<y>9.180000305175781</y>
<z>-40.61399841308594</z>
</parallel>
<rotation>
<x>-0.41100001335144043</x>
<y>-0.8080000281333923</y>
<z>0.421999990940094</z>
<x>0.9079999923706055</x>
<y>-0.40400001406669617</y>
<z>0.11100000143051147</z>
<x>0.08100000023841858</x>
<y>0.42899999022483826</y>
<z>0.8999999761581421</z>
</rotation>
<rmsd>1.150215983390808</rmsd>
<dmax>2.0468859672546387</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2DFU</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2DFUA</entryIDChain>
<sequence>LPLGP--WLETD</sequence>
<secondary-structure> -- EE </secondary-structure>
<atom-coordinate>
<line>ATOM 1212 CA LEU A 168 19.237 34.133 -19.632 1.00 28.89 C </line>
<line>ATOM 1220 CA PRO A 169 16.380 32.887 -21.822 1.00 27.51 C </line>
<line>ATOM 1227 CA LEU A 170 14.950 29.941 -19.854 1.00 27.01 C </line>
<line>ATOM 1235 CA GLY A 171 12.322 27.335 -20.682 1.00 25.48 C </line>
<line>ATOM 1239 CA PRO A 172 10.022 26.273 -22.263 1.00 25.86 C </line>
<line>ATOM 1246 CA TRP A 173 9.256 24.223 -19.202 1.00 27.47 C </line>
<line>ATOM 1260 CA LEU A 174 10.779 21.763 -16.859 1.00 32.02 C </line>
<line>ATOM 1268 CA GLU A 175 10.794 18.026 -17.014 1.00 30.69 C </line>
<line>ATOM 1277 CA THR A 176 10.624 16.186 -13.669 1.00 33.02 C </line>
<line>ATOM 1284 CA ASP A 177 11.613 12.734 -14.939 1.00 37.83 C </line>
</atom-coordinate>
<distance-map>
<line> ASP THR GLU LEU TRP PRO GLY LEU PRO LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 23.20 20.78 18.37 15.24 14.07 12.39 9.75 6.00 3.81 </line>
<line>PRO CA 21.82 19.46 16.59 13.41 11.52 9.18 6.97 3.82 </line>
<line>LEU CA 18.20 15.69 12.93 9.66 8.10 6.60 3.79 </line>
<line>GLY CA 15.71 13.28 10.12 6.93 4.61 2.99 </line>
<line>PRO CA 15.48 13.27 9.81 7.08 3.76 </line>
<line>TRP CA 12.48 9.85 6.75 3.72 </line>
<line>LEU CA 9.27 6.43 3.74 </line>
<line>GLU CA 5.74 3.82 </line>
<line>THR CA 3.81 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>LEU CA 530</line>
<line>PRO CA 553</line>
<line>LEU CA 574</line>
<line>GLY CA 558</line>
<line>PRO CA 518</line>
<line>TRP CA 536</line>
<line>LEU CA 483</line>
<line>GLU CA 398</line>
<line>THR CA 342</line>
<line>ASP CA 263</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1SAW</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1SAWA</entryIDChain>
<sequence>CPVSAFVPKEKI</sequence>
<secondary-structure>EEE </secondary-structure>
<atom-coordinate>
<line>ATOM 830 CA CYS A 129 39.546 22.529 14.860 1.00 16.38 C </line>
<line>ATOM 836 CA PRO A 130 40.364 20.704 11.607 1.00 14.86 C </line>
<line>ATOM 843 CA VAL A 131 44.062 21.060 10.863 1.00 14.17 C </line>
<line>ATOM 850 CA SER A 132 46.514 20.735 7.970 1.00 13.99 C </line>
<line>ATOM 856 CA ALA A 133 49.882 19.082 7.850 1.00 13.30 C </line>
<line>ATOM 861 CA PHE A 134 52.522 20.818 9.920 1.00 12.63 C </line>
<line>ATOM 872 CA VAL A 135 54.491 23.445 8.014 1.00 15.10 C </line>
<line>ATOM 879 CA PRO A 136 57.946 23.977 9.596 1.00 17.48 C </line>
<line>ATOM 886 CA LYS A 137 58.778 27.661 10.155 1.00 20.41 C </line>
<line>ATOM 895 CA GLU A 138 61.822 27.344 7.870 1.00 23.28 C </line>
<line>ATOM 904 CA LYS A 139 59.316 27.089 4.988 1.00 23.78 C </line>
<line>ATOM 913 CA ILE A 140 57.651 30.395 5.966 1.00 23.56 C </line>
</atom-coordinate>
<distance-map>
<line> ILE LYS GLU LYS PRO VAL PHE ALA SER VAL PRO CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 21.65 22.56 23.84 20.45 19.19 16.46 13.99 12.96 9.96 6.21 3.82 </line>
<line>PRO CA 20.61 21.07 22.77 19.74 18.00 14.83 12.28 10.36 7.15 3.79 </line>
<line>VAL CA 17.20 17.42 19.08 16.14 14.24 11.07 8.52 6.85 3.81 </line>
<line>SER CA 14.88 14.60 16.67 14.25 11.99 8.42 6.32 3.75 </line>
<line>ALA CA 13.85 12.70 14.52 12.57 9.59 6.35 3.78 </line>
<line>PHE CA 11.56 10.48 11.54 9.27 6.29 3.80 </line>
<line>VAL CA 7.90 6.76 8.30 6.38 3.84 </line>
<line>PRO CA 7.38 5.73 5.42 3.82 </line>
<line>LYS CA 5.13 5.23 3.82 </line>
<line>GLU CA 5.51 3.83 </line>
<line>LYS CA 3.83 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>CYS CA 538</line>
<line>PRO CA 521</line>
<line>VAL CA 511</line>
<line>SER CA 443</line>
<line>ALA CA 361</line>
<line>PHE CA 382</line>
<line>VAL CA 350</line>
<line>PRO CA 297</line>
<line>LYS CA 306</line>
<line>GLU CA 200</line>
<line>LYS CA 216</line>
<line>ILE CA 270</line>
</n14>
</entryChain>
<parallel>
<x>-36.89699935913086</x>
<y>3.936000108718872</y>
<z>-29.761999130249023</z>
</parallel>
<rotation>
<x>-0.6790000200271606</x>
<y>-0.6460000276565552</y>
<z>0.3490000069141388</z>
<x>0.734000027179718</x>
<y>-0.6010000109672546</y>
<z>0.3160000145435333</z>
<x>0.004999999888241291</x>
<y>0.47099998593330383</y>
<z>0.8820000290870667</z>
</rotation>
<rmsd>3.2464599609375</rmsd>
<dmax>4.289734840393066</dmax>
</indel>