NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1SZOH-2J5GL
confEVID 1SZOH-2J5GL
pdbIDA 1SZO
pdbIDB 2J5G
pdbChainA H
pdbChainB L
identity 0.479699999094009
indelSize 2
alignment <alignment>
<seq1>LATPFQEYSQKYENIRLERD-GGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSF-NLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVTNAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAEKPLLARRYARKVLTRQLRRVMEADLSLGLAHEALAAIDL---</seq1>
<seq2>----QPEYFTKYENLHFHRDENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGDVTNPREWDKTYWEGKKVLQNLLDIEVPVISAVNGAALLHSEYILTTDIILASENTVFQDMPHLNAGIVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQAYELNVVHEVLPQSKLMERAWEIARTLAKQPTLNLRYTRVALTQRLKRLVNEGIGYGLALEGITATDLRNT</seq2>
<ss_1> GGG EEEEEEE- EEEEE HHHHHHHHHHHHHHH EEEEEEE EEEGGG - HHHHHHHHHHHHHHHHHHH EEEE HHHH EEEEE EEEEE HHHHHHH HHHHHHHHH EEEEEHHHHH EEE HHHHHHHHHHHHHHHH HHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHH ---</ss_1>
<ss_2>---- GGG EEEEEEEEE EEEEE HHHHHHHHHHHHHHHH EEEEE EE HHHHHHHHHHHHHHHHHHH EEEE GGG EEEEE EEE HHHHHHHH HHHHHHHHHH EEEHHHHH EEE HHHHHHHHHHHGGG HHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHGGGG </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1SZO</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1SZOH</entryIDChain>
<sequence>RLERD-GGVLL</sequence>
<secondary-structure>EEEEE- EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 13703 CA ARG H 19 71.697 80.501 16.240 1.00 20.26 C </line>
<line>ATOM 13710 CA LEU H 20 71.410 77.206 14.404 1.00 19.92 C </line>
<line>ATOM 13718 CA GLU H 21 74.042 74.536 14.362 1.00 21.99 C </line>
<line>ATOM 13727 CA ARG H 22 73.798 70.917 13.323 1.00 21.18 C </line>
<line>ATOM 13738 CA ASP H 23 76.102 68.047 14.140 1.00 23.91 C </line>
<line>ATOM 13746 CA GLY H 24 75.323 64.465 13.069 1.00 24.39 C </line>
<line>ATOM 13750 CA GLY H 25 71.676 65.370 12.451 1.00 22.70 C </line>
<line>ATOM 13754 CA VAL H 26 71.288 66.940 15.892 1.00 19.89 C </line>
<line>ATOM 13761 CA LEU H 27 70.109 70.519 15.527 1.00 17.24 C </line>
<line>ATOM 13769 CA LEU H 28 71.057 72.890 18.341 1.00 17.14 C </line>
</atom-coordinate>
<distance-map>
<line> LEU LEU VAL GLY GLY ASP ARG GLU LEU ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 7.92 10.13 13.57 15.60 16.74 13.38 10.24 6.68 3.78 </line>
<line>LEU CA 5.85 6.90 10.37 12.00 13.40 10.29 6.81 3.75 </line>
<line>GLU CA 5.24 5.74 8.22 9.66 10.23 6.81 3.77 </line>
<line>ARG CA 6.05 4.32 5.36 6.00 6.63 3.77 </line>
<line>ASP CA 8.16 6.63 5.24 5.44 3.82 </line>
<line>GLY CA 10.82 8.36 5.51 3.81 </line>
<line>GLY CA 9.57 6.20 3.80 </line>
<line>VAL CA 6.44 3.79 </line>
<line>LEU CA 3.80 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>ARG CA 370</line>
<line>LEU CA 385</line>
<line>GLU CA 331</line>
<line>ARG CA 307</line>
<line>ASP CA 256</line>
<line>GLY CA 230</line>
<line>GLY CA 330</line>
<line>VAL CA 381</line>
<line>LEU CA 441</line>
<line>LEU CA 441</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2J5G</pdbID>
<pdbChain>L</pdbChain>
<entryIDChain>2J5GL</entryIDChain>
<sequence>HFHRDENGILE</sequence>
<secondary-structure>EEEEE EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 22372 CA HIS L 16 26.813 -27.730 108.482 1.00 9.64 C </line>
<line>ATOM 22382 CA PHE L 17 30.530 -27.215 109.120 1.00 9.89 C </line>
<line>ATOM 22393 CA HIS L 18 33.375 -26.914 106.585 1.00 11.88 C </line>
<line>ATOM 22403 CA ARG L 19 36.922 -25.867 107.457 1.00 11.91 C </line>
<line>ATOM 22414 CA ASP L 20 39.872 -25.231 105.147 1.00 11.91 C </line>
<line>ATOM 22422 CA GLU L 21 43.631 -25.730 105.740 1.00 14.83 C </line>
<line>ATOM 22431 CA ASN L 22 43.898 -22.083 106.920 1.00 12.72 C </line>
<line>ATOM 22439 CA GLY L 23 41.424 -22.694 109.792 1.00 9.54 C </line>
<line>ATOM 22443 CA ILE L 24 38.605 -20.773 108.054 1.00 9.14 C </line>
<line>ATOM 22451 CA LEU L 25 35.392 -22.370 109.310 1.00 8.33 C </line>
<line>ATOM 22459 CA GLU L 26 32.084 -21.912 107.501 1.00 9.56 C </line>
</atom-coordinate>
<distance-map>
<line> GLU LEU ILE GLY ASN GLU ASP ARG HIS PHE HIS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>HIS CA 7.91 10.15 13.70 15.51 18.06 17.16 13.71 10.33 6.88 3.81 </line>
<line>PHE CA 5.76 6.87 10.38 11.81 14.49 13.61 10.34 6.74 3.82 </line>
<line>HIS CA 5.25 5.67 8.20 9.64 11.58 10.36 6.86 3.80 </line>
<line>ARG CA 6.25 4.24 5.40 5.98 7.95 6.93 3.80 </line>
<line>ASP CA 8.79 6.75 5.47 5.52 5.41 3.84 </line>
<line>GLU CA 12.29 9.59 7.43 5.52 3.84 </line>
<line>ASN CA 11.83 8.84 5.57 3.84 </line>
<line>GLY CA 9.65 6.06 3.83 </line>
<line>ILE CA 6.64 3.80 </line>
<line>LEU CA 3.80 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>HIS CA 378</line>
<line>PHE CA 379</line>
<line>HIS CA 341</line>
<line>ARG CA 322</line>
<line>ASP CA 270</line>
<line>GLU CA 212</line>
<line>ASN CA 267</line>
<line>GLY CA 358</line>
<line>ILE CA 409</line>
<line>LEU CA 461</line>
<line>GLU CA 470</line>
</n14>
</entryChain>
<parallel>
<x>36.73699951171875</x>
<y>95.81099700927734</y>
<z>-93.45999908447266</z>
</parallel>
<rotation>
<x>0.2800000011920929</x>
<y>-0.8460000157356262</y>
<z>-0.45399999618530273</z>
<x>-0.4659999907016754</x>
<y>-0.5329999923706055</y>
<z>0.7070000171661377</z>
<x>-0.8399999737739563</x>
<y>0.014000000432133675</y>
<z>-0.5429999828338623</z>
</rotation>
<rmsd>0.6358219981193542</rmsd>
<dmax>1.433580994606018</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1SZO</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1SZOH</entryIDChain>
<sequence>DFTSF-NLGTP</sequence>
<secondary-structure>EGGG - H</secondary-structure>
<atom-coordinate>
<line>ATOM 14157 CA ASP H 78 60.734 94.793 25.324 1.00 23.91 C </line>
<line>ATOM 14165 CA PHE H 79 56.998 95.560 25.315 1.00 24.59 C </line>
<line>ATOM 14176 CA THR H 80 57.633 98.611 23.068 1.00 25.88 C </line>
<line>ATOM 14183 CA SER H 81 58.681 96.279 20.223 1.00 24.43 C </line>
<line>ATOM 14189 CA PHE H 82 55.020 95.128 20.006 1.00 25.04 C </line>
<line>ATOM 14200 CA ASN H 83 51.965 97.076 18.689 1.00 28.81 C </line>
<line>ATOM 14208 CA LEU H 84 49.067 96.222 21.059 1.00 29.26 C </line>
<line>ATOM 14216 CA GLY H 85 46.587 99.037 20.491 1.00 29.21 C </line>
<line>ATOM 14220 CA THR H 86 44.210 98.062 17.677 1.00 28.03 C </line>
<line>ATOM 14227 CA PRO H 87 42.533 94.960 16.248 1.00 26.78 C </line>
</atom-coordinate>
<distance-map>
<line> PRO THR GLY LEU ASN PHE SER THR PHE ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 20.34 18.50 15.54 12.50 11.23 7.81 5.70 5.41 3.81 </line>
<line>PHE CA 17.08 15.10 11.99 9.03 8.46 5.68 5.41 3.84 </line>
<line>THR CA 16.97 14.48 11.35 9.12 7.33 5.32 3.82 </line>
<line>SER CA 16.68 14.80 12.41 9.65 6.93 3.84 </line>
<line>PHE CA 13.04 11.44 9.31 6.14 3.86 </line>
<line>ASN CA 9.97 7.88 6.00 3.84 </line>
<line>LEU CA 8.21 6.20 3.79 </line>
<line>GLY CA 7.15 3.81 </line>
<line>THR CA 3.80 </line>
<line>PRO CA </line>
</distance-map>
<n14>
<line>ASP CA 241</line>
<line>PHE CA 269</line>
<line>THR CA 180</line>
<line>SER CA 223</line>
<line>PHE CA 290</line>
<line>ASN CA 260</line>
<line>LEU CA 305</line>
<line>GLY CA 209</line>
<line>THR CA 183</line>
<line>PRO CA 197</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2J5G</pdbID>
<pdbChain>L</pdbChain>
<entryIDChain>2J5GL</entryIDChain>
<sequence>DFPSLGDVTNP</sequence>
<secondary-structure> H</secondary-structure>
<atom-coordinate>
<line>ATOM 22859 CA ASP L 76 8.253 -22.816 114.465 1.00 16.41 C </line>
<line>ATOM 22867 CA PHE L 77 6.599 -20.919 117.331 1.00 19.95 C </line>
<line>ATOM 22878 CA PRO L 78 4.966 -23.957 118.983 1.00 19.73 C </line>
<line>ATOM 22885 CA SER L 79 8.306 -25.847 119.038 1.00 16.84 C </line>
<line>ATOM 22891 CA LEU L 80 9.618 -23.212 121.501 1.00 17.58 C </line>
<line>ATOM 22899 CA GLY L 81 7.441 -24.788 124.185 1.00 17.02 C </line>
<line>ATOM 22903 CA ASP L 82 4.692 -23.169 126.256 1.00 15.23 C </line>
<line>ATOM 22911 CA VAL L 83 6.257 -19.722 126.606 1.00 14.97 C </line>
<line>ATOM 22918 CA THR L 84 3.298 -18.637 128.756 1.00 14.47 C </line>
<line>ATOM 22925 CA ASN L 85 4.434 -20.982 131.550 1.00 11.77 C </line>
<line>ATOM 22933 CA PRO L 86 7.356 -19.424 133.445 1.00 10.95 C </line>
</atom-coordinate>
<distance-map>
<line> PRO ASN THR VAL ASP GLY LEU SER PRO PHE ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 19.30 17.60 15.69 12.69 12.32 9.95 7.18 5.49 5.70 3.81 </line>
<line>PHE CA 16.20 14.38 12.11 9.36 9.40 7.92 5.64 5.49 3.82 </line>
<line>PRO CA 15.34 12.93 11.25 8.82 7.32 5.82 5.34 3.84 </line>
<line>SER CA 15.80 13.97 13.10 9.95 8.50 5.33 3.84 </line>
<line>LEU CA 12.73 11.53 10.65 7.04 6.85 3.80 </line>
<line>GLY CA 10.70 8.82 8.71 5.74 3.80 </line>
<line>ASP CA 8.53 5.73 5.36 3.80 </line>
<line>VAL CA 6.93 5.42 3.82 </line>
<line>THR CA 6.25 3.82 </line>
<line>ASN CA 3.82 </line>
<line>PRO CA </line>
</distance-map>
<n14>
<line>ASP CA 257</line>
<line>PHE CA 289</line>
<line>PRO CA 213</line>
<line>SER CA 245</line>
<line>LEU CA 345</line>
<line>GLY CA 266</line>
<line>ASP CA 248</line>
<line>VAL CA 344</line>
<line>THR CA 258</line>
<line>ASN CA 227</line>
<line>PRO CA 243</line>
</n14>
</entryChain>
<parallel>
<x>48.08700180053711</x>
<y>118.87300109863281</y>
<z>-99.84500122070312</z>
</parallel>
<rotation>
<x>0.17399999499320984</x>
<y>-0.9480000138282776</y>
<z>-0.2680000066757202</z>
<x>-0.6079999804496765</x>
<y>-0.3179999887943268</y>
<z>0.7269999980926514</z>
<x>-0.7739999890327454</x>
<y>0.035999998450279236</y>
<z>-0.6320000290870667</z>
</rotation>
<rmsd>0.9196079969406128</rmsd>
<dmax>1.8336420059204102</dmax>
</indel>