NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1VL8B-2UVDB
confEVID 1VL8B-2UVDB
pdbIDA 1VL8
pdbIDB 2UVD
pdbChainA B
pdbChainB B
identity 0.34799998998642
indelSize 3
alignment <alignment>
<seq1>VFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRN-LEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIPLGRTGVPEDLKGVAVFLASEEAKYVTGQIIFVDGGWTAN</seq1>
<seq2>--MLKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKL-GSDAIAVRADVANAEDVTNMVKQTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTG-NPGQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFI-ATDMTDV-LDENIKAEMLKLIPAAQFGEAQDIANAVTFFASDQSKYITGQTLNVDGGMVM-</seq2>
<ss_1> EEEE HHHHHHHHHHHH EEEEEEEE-HHHHHHHHHHHHH EEE HHHHHHHHHHHHHHH EEEE HHHHHHHIIIIHHHHHHHHHHHHHGGG EEEE HHHHHHHHHHHHHHHHHHHHH EEEEE HHHHHHH HHHHHHHGGG HHHHHHHH GGG EEEE </ss_1>
<ss_2>-- EEEE HHHHHHHHHHHH EEEEEE HHHHHHHHHHHH - EEE HHHHHHHHHHHHHHH EEEE HHHH HHHHHHHHIIIIHHHHHHHHHHHHHHHH EEEEE HHHH - HHHHHHHHHHHHHHHHHHHHH EEEEEE EE-GGG - HHHHHHHHH HHHHHHHHHHH GGG EEE -</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1VL8</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1VL8B</entryIDChain>
<sequence>VASRN-LEEAS</sequence>
<secondary-structure>EEEEE-HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 2155 CA VAL B 38 39.035 55.799 19.062 1.00 26.32 C </line>
<line>ATOM 2162 CA ALA B 39 35.714 54.801 20.639 1.00 26.53 C </line>
<line>ATOM 2167 CA SER B 40 35.139 52.277 23.425 1.00 29.74 C </line>
<line>ATOM 2173 CA ARG B 41 33.269 52.103 26.735 1.00 30.65 C </line>
<line>ATOM 2184 CA ASN B 42 36.328 53.153 28.760 1.00 27.38 C </line>
<line>ATOM 2192 CA LEU B 43 37.379 56.780 28.168 1.00 28.02 C </line>
<line>ATOM 2200 CA GLU B 44 40.844 56.483 29.802 1.00 27.27 C </line>
<line>ATOM 2209 CA GLU B 45 41.683 53.401 27.720 1.00 29.53 C </line>
<line>ATOM 2218 CA ALA B 46 40.419 55.042 24.499 1.00 24.01 C </line>
<line>ATOM 2223 CA SER B 47 42.473 58.178 25.311 1.00 27.03 C </line>
</atom-coordinate>
<distance-map>
<line> SER ALA GLU GLU LEU ASN ARG SER ALA VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 7.52 5.66 9.37 10.91 9.31 10.41 10.29 6.83 3.81 </line>
<line>ALA CA 8.88 6.09 9.37 10.64 7.96 8.31 7.10 3.80 </line>
<line>SER CA 9.60 6.06 7.91 9.53 6.91 5.54 3.81 </line>
<line>ARG CA 11.12 8.05 8.57 9.27 6.39 3.82 </line>
<line>ASN CA 8.65 6.20 5.46 5.71 3.82 </line>
<line>LEU CA 6.01 5.07 5.49 3.84 </line>
<line>GLU CA 5.07 5.51 3.81 </line>
<line>GLU CA 5.41 3.83 </line>
<line>ALA CA 3.84 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>VAL CA 478</line>
<line>ALA CA 467</line>
<line>SER CA 394</line>
<line>ARG CA 307</line>
<line>ASN CA 232</line>
<line>LEU CA 233</line>
<line>GLU CA 194</line>
<line>GLU CA 241</line>
<line>ALA CA 324</line>
<line>SER CA 282</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2UVD</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>2UVDB</entryIDChain>
<sequence>VNYAGNEQKAN</sequence>
<secondary-structure>EEE HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 2052 CA VAL B 33 -1.908 -12.968 33.387 1.00 53.37 C </line>
<line>ATOM 2059 CA ASN B 34 0.998 -10.536 33.019 1.00 52.94 C </line>
<line>ATOM 2067 CA TYR B 35 0.488 -6.890 32.093 1.00 55.42 C </line>
<line>ATOM 2079 CA ALA B 36 2.604 -3.697 31.962 1.00 61.44 C </line>
<line>ATOM 2084 CA GLY B 37 0.167 -0.789 32.181 1.00 58.10 C </line>
<line>ATOM 2088 CA ASN B 38 -3.276 -0.372 33.722 1.00 65.60 C </line>
<line>ATOM 2096 CA GLU B 39 -4.426 -3.462 35.588 1.00 59.53 C </line>
<line>ATOM 2105 CA GLN B 40 -8.105 -3.373 34.550 1.00 53.60 C </line>
<line>ATOM 2114 CA LYS B 41 -8.133 -5.397 31.309 1.00 58.44 C </line>
<line>ATOM 2123 CA ALA B 42 -5.854 -7.980 32.976 1.00 50.27 C </line>
<line>ATOM 2128 CA ASN B 43 -8.464 -8.309 35.777 1.00 50.71 C </line>
</atom-coordinate>
<distance-map>
<line> ASN ALA LYS GLN GLU ASN GLY ALA TYR ASN VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 8.39 6.37 10.02 11.48 10.08 12.67 12.41 10.41 6.66 3.81 </line>
<line>ASN CA 10.10 7.31 10.62 11.68 9.28 11.05 9.82 7.10 3.80 </line>
<line>TYR CA 9.78 6.50 8.78 9.60 6.94 7.70 6.11 3.83 </line>
<line>ALA CA 12.58 9.53 10.89 11.02 7.91 6.98 3.80 </line>
<line>GLY CA 12.00 9.41 9.53 8.98 6.31 3.80 </line>
<line>ASN CA 9.70 8.07 7.39 5.75 3.79 </line>
<line>GLU CA 6.31 5.41 5.98 3.82 </line>
<line>GLN CA 5.10 5.36 3.82 </line>
<line>LYS CA 5.34 3.83 </line>
<line>ALA CA 3.84 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>VAL CA 490</line>
<line>ASN CA 466</line>
<line>TYR CA 381</line>
<line>ALA CA 314</line>
<line>GLY CA 222</line>
<line>ASN CA 172</line>
<line>GLU CA 219</line>
<line>GLN CA 195</line>
<line>LYS CA 246</line>
<line>ALA CA 323</line>
<line>ASN CA 278</line>
</n14>
</entryChain>
<parallel>
<x>39.7130012512207</x>
<y>60.23899841308594</y>
<z>-7.4720001220703125</z>
</parallel>
<rotation>
<x>-0.9229999780654907</x>
<y>-0.2409999966621399</y>
<z>-0.3009999990463257</z>
<x>-0.2680000066757202</x>
<y>-0.16200000047683716</y>
<z>0.949999988079071</z>
<x>-0.27799999713897705</x>
<y>0.9570000171661377</y>
<z>0.08500000089406967</z>
</rotation>
<rmsd>1.2927219867706299</rmsd>
<dmax>2.647510051727295</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2UVD</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>2UVDB</entryIDChain>
<sequence>EIKKL-GSDAI</sequence>
<secondary-structure>HHHH - E</secondary-structure>
<atom-coordinate>
<line>ATOM 2167 CA GLU B 48 -13.062 -14.912 32.563 1.00 58.50 C </line>
<line>ATOM 2176 CA ILE B 49 -10.567 -17.666 33.443 1.00 51.38 C </line>
<line>ATOM 2184 CA LYS B 50 -12.251 -18.181 36.826 1.00 54.16 C </line>
<line>ATOM 2193 CA LYS B 51 -15.683 -18.310 35.155 1.00 60.97 C </line>
<line>ATOM 2202 CA LEU B 52 -14.553 -21.297 33.089 1.00 63.97 C </line>
<line>ATOM 2210 CA GLY B 53 -13.419 -23.189 36.211 1.00 58.19 C </line>
<line>ATOM 2214 CA SER B 54 -9.696 -22.496 36.289 1.00 57.90 C </line>
<line>ATOM 2220 CA ASP B 55 -7.609 -20.199 38.507 1.00 53.46 C </line>
<line>ATOM 2228 CA ALA B 56 -5.647 -17.067 37.626 1.00 49.96 C </line>
<line>ATOM 2233 CA ILE B 57 -3.902 -13.990 38.950 1.00 51.75 C </line>
</atom-coordinate>
<distance-map>
<line> ILE ALA ASP SER GLY LEU LYS LYS ILE GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 11.20 9.23 9.64 9.10 9.05 6.58 5.01 5.43 3.82 </line>
<line>ILE CA 9.39 6.49 6.39 5.67 6.80 5.40 5.43 3.81 </line>
<line>LYS CA 9.58 6.74 5.33 5.04 5.18 5.38 3.82 </line>
<line>LYS CA 13.11 10.41 8.94 7.39 5.48 3.80 </line>
<line>LEU CA 14.18 10.85 8.88 5.94 3.82 </line>
<line>GLY CA 13.52 9.99 6.93 3.79 </line>
<line>SER CA 10.63 6.90 3.81 </line>
<line>ASP CA 7.24 3.80 </line>
<line>ALA CA 3.78 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>GLU CA 266</line>
<line>ILE CA 313</line>
<line>LYS CA 234</line>
<line>LYS CA 178</line>
<line>LEU CA 205</line>
<line>GLY CA 198</line>
<line>SER CA 270</line>
<line>ASP CA 312</line>
<line>ALA CA 403</line>
<line>ILE CA 379</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1VL8</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1VL8B</entryIDChain>
<sequence>KLTEKYGVETM</sequence>
<secondary-structure>HHHH E</secondary-structure>
<atom-coordinate>
<line>ATOM 2254 CA LYS B 52 49.852 56.272 21.528 1.00 30.45 C </line>
<line>ATOM 2263 CA LEU B 53 48.637 56.702 17.918 1.00 28.41 C </line>
<line>ATOM 2271 CA THR B 54 49.546 60.398 17.860 1.00 26.68 C </line>
<line>ATOM 2278 CA GLU B 55 52.913 59.773 19.566 1.00 31.37 C </line>
<line>ATOM 2287 CA LYS B 56 54.011 56.943 17.301 1.00 31.27 C </line>
<line>ATOM 2296 CA TYR B 57 52.503 58.085 13.984 1.00 29.47 C </line>
<line>ATOM 2308 CA GLY B 58 52.152 61.860 14.323 1.00 28.16 C </line>
<line>ATOM 2312 CA VAL B 59 48.472 61.897 13.338 1.00 26.77 C </line>
<line>ATOM 2319 CA GLU B 60 45.578 63.794 14.888 1.00 30.87 C </line>
<line>ATOM 2328 CA THR B 61 43.385 61.679 17.183 1.00 25.01 C </line>
<line>ATOM 2335 CA MET B 62 40.310 61.883 19.378 1.00 30.94 C </line>
</atom-coordinate>
<distance-map>
<line> MET THR GLU VAL GLY TYR LYS GLU THR LEU LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 11.28 9.48 10.91 10.03 9.40 8.20 5.97 5.05 5.53 3.83 </line>
<line>LEU CA 9.92 7.27 8.30 6.93 7.20 5.69 5.41 5.52 3.81 </line>
<line>THR CA 9.48 6.33 6.01 4.88 4.63 5.40 5.67 3.83 </line>
<line>GLU CA 12.78 10.00 9.58 7.94 5.69 5.85 3.79 </line>
<line>LYS CA 14.71 11.63 11.13 8.42 6.04 3.82 </line>
<line>TYR CA 13.86 10.31 9.02 5.59 3.81 </line>
<line>GLY CA 12.88 9.22 6.88 3.81 </line>
<line>VAL CA 10.15 6.38 3.79 </line>
<line>GLU CA 7.18 3.81 </line>
<line>THR CA 3.78 </line>
<line>MET CA </line>
</distance-map>
<n14>
<line>LYS CA 267</line>
<line>LEU CA 320</line>
<line>THR CA 269</line>
<line>GLU CA 188</line>
<line>LYS CA 195</line>
<line>TYR CA 244</line>
<line>GLY CA 211</line>
<line>VAL CA 284</line>
<line>GLU CA 310</line>
<line>THR CA 389</line>
<line>MET CA 384</line>
</n14>
</entryChain>
<parallel>
<x>-62.25</x>
<y>-79.23600006103516</y>
<z>18.170000076293945</z>
</parallel>
<rotation>
<x>-0.9100000262260437</x>
<y>-0.3930000066757202</y>
<z>-0.13300000131130219</z>
<x>-0.057999998331069946</x>
<y>-0.19499999284744263</y>
<z>0.9789999723434448</z>
<x>-0.41100001335144043</x>
<y>0.8989999890327454</y>
<z>0.1550000011920929</z>
</rotation>
<rmsd>0.9643210172653198</rmsd>
<dmax>1.722161054611206</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2UVD</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>2UVDB</entryIDChain>
<sequence>VGVTG-NPGQA</sequence>
<secondary-structure>HHHH - H</secondary-structure>
<atom-coordinate>
<line>ATOM 2905 CA VAL B 143 7.835 -10.081 9.430 1.00 57.40 C </line>
<line>ATOM 2912 CA GLY B 144 10.907 -11.417 11.323 1.00 57.73 C </line>
<line>ATOM 2916 CA VAL B 145 11.382 -13.935 8.481 1.00 60.53 C </line>
<line>ATOM 2923 CA THR B 146 10.800 -11.682 5.432 1.00 57.40 C </line>
<line>ATOM 2930 CA GLY B 147 11.582 -8.143 6.610 1.00 54.86 C </line>
<line>ATOM 2934 CA ASN B 148 9.177 -5.213 6.310 1.00 59.30 C </line>
<line>ATOM 2942 CA PRO B 149 9.770 -1.561 5.287 1.00 62.40 C </line>
<line>ATOM 2949 CA GLY B 150 8.298 0.310 8.300 1.00 62.13 C </line>
<line>ATOM 2953 CA GLN B 151 9.724 -1.886 10.978 1.00 56.64 C </line>
<line>ATOM 2962 CA ALA B 152 13.495 -2.240 11.205 1.00 51.36 C </line>
</atom-coordinate>
<distance-map>
<line> ALA GLN GLY PRO ASN GLY THR VAL GLY VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 9.83 8.55 10.46 9.67 5.94 5.07 5.23 5.32 3.85 </line>
<line>GLY CA 9.54 9.61 12.39 11.61 8.16 5.78 5.90 3.83 </line>
<line>VAL CA 12.19 12.42 14.58 12.88 9.25 6.09 3.84 </line>
<line>THR CA 11.39 11.31 12.58 10.17 6.73 3.81 </line>
<line>GLY CA 7.72 7.85 9.22 6.95 3.80 </line>
<line>ASN CA 7.17 5.76 5.94 3.84 </line>
<line>PRO CA 7.03 5.70 3.84 </line>
<line>GLY CA 6.48 3.75 </line>
<line>GLN CA 3.79 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>VAL CA 348</line>
<line>GLY CA 347</line>
<line>VAL CA 280</line>
<line>THR CA 239</line>
<line>GLY CA 238</line>
<line>ASN CA 252</line>
<line>PRO CA 214</line>
<line>GLY CA 248</line>
<line>GLN CA 306</line>
<line>ALA CA 291</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1VL8</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1VL8B</entryIDChain>
<sequence>TVEEVTMPNIS</sequence>
<secondary-structure> H</secondary-structure>
<atom-coordinate>
<line>ATOM 3029 CA THR B 148 31.464 32.163 12.401 1.00 29.76 C </line>
<line>ATOM 3036 CA VAL B 149 30.290 33.947 9.292 1.00 32.93 C </line>
<line>ATOM 3043 CA GLU B 150 31.210 30.655 7.524 1.00 34.13 C </line>
<line>ATOM 3052 CA GLU B 151 31.694 28.017 10.239 1.00 31.59 C </line>
<line>ATOM 3061 CA VAL B 152 31.323 27.601 13.997 1.00 27.14 C </line>
<line>ATOM 3068 CA THR B 153 34.477 25.947 15.137 1.00 32.31 C </line>
<line>ATOM 3075 CA MET B 154 33.839 26.116 18.920 1.00 30.55 C </line>
<line>ATOM 3083 CA PRO B 155 30.893 25.183 21.055 1.00 30.91 C </line>
<line>ATOM 3090 CA ASN B 156 29.084 27.686 23.311 1.00 26.28 C </line>
<line>ATOM 3098 CA ILE B 157 29.175 30.723 21.038 1.00 25.68 C </line>
<line>ATOM 3106 CA SER B 158 25.647 30.640 19.444 1.00 26.62 C </line>
</atom-coordinate>
<distance-map>
<line> SER ILE ASN PRO MET THR VAL GLU GLU VAL THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 9.26 9.05 12.03 11.13 9.20 7.43 4.84 4.68 5.11 3.77 </line>
<line>VAL CA 11.64 12.23 15.40 14.68 12.91 10.76 7.97 6.17 3.85 </line>
<line>GLU CA 13.15 13.67 16.20 14.60 12.55 9.53 7.16 3.82 </line>
<line>GLU CA 11.32 11.41 13.33 11.21 9.14 6.00 3.80 </line>
<line>VAL CA 8.43 8.00 9.58 7.47 5.72 3.74 </line>
<line>THR CA 10.89 9.26 9.95 6.96 3.84 </line>
<line>MET CA 9.37 6.89 6.66 3.76 </line>
<line>PRO CA 7.74 5.80 3.82 </line>
<line>ASN CA 5.96 3.79 </line>
<line>ILE CA 3.87 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>THR CA 376</line>
<line>VAL CA 344</line>
<line>GLU CA 293</line>
<line>GLU CA 286</line>
<line>VAL CA 289</line>
<line>THR CA 332</line>
<line>MET CA 320</line>
<line>PRO CA 258</line>
<line>ASN CA 267</line>
<line>ILE CA 344</line>
<line>SER CA 319</line>
</n14>
</entryChain>
<parallel>
<x>-21.256000518798828</x>
<y>-36.63600158691406</y>
<z>-6.946000099182129</z>
</parallel>
<rotation>
<x>-0.7860000133514404</x>
<y>-0.2770000100135803</y>
<z>-0.5519999861717224</z>
<x>-0.492000013589859</x>
<y>-0.25999999046325684</y>
<z>0.8309999704360962</z>
<x>-0.37400001287460327</x>
<y>0.925000011920929</y>
<z>0.06800000369548798</z>
</rotation>
<rmsd>1.6760109663009644</rmsd>
<dmax>3.0195400714874268</dmax>
</indel>