NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1VL8B-2UVDE
confEVID 1VL8B-2UVDE
pdbIDA 1VL8
pdbIDB 2UVD
pdbChainA B
pdbChainB E
identity 0.34799998998642
indelSize 3
alignment <alignment>
<seq1>VFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRN-LEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIPLGRTGVPEDLKGVAVFLASEEAKYVTGQIIFVDGGWTAN</seq1>
<seq2>--MLKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKL-GSDAIAVRADVANAEDVTNMVKQTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTG-NPGQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFI-ATDMTDV-LDENIKAEMLKLIPAAQFGEAQDIANAVTFFASDQSKYITGQTLNVDGGMVM-</seq2>
<ss_1> EEEE HHHHHHHHHHHH EEEEEEEE-HHHHHHHHHHHHH EEE HHHHHHHHHHHHHHH EEEE HHHHHHHIIIIHHHHHHHHHHHHHGGG EEEE HHHHHHHHHHHHHHHHHHHHH EEEEE HHHHHHH HHHHHHHGGG HHHHHHHH GGG EEEE </ss_1>
<ss_2>-- EEEE HHHHHHHHHHHH EEEEEE HHHHHHHHHHHHH - EEE HHHHHHHHHHHHHHH EEEE HHHHHHHHIIIIHHHHHHHHHHHHHHHH EEEEE HHHH - HHHHHHHHHHHHHHHHHHHHH EEEEEE EE-GGG - HHHHHHHHH HHHHHHHHHHHH GGG EEE -</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1VL8</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1VL8B</entryIDChain>
<sequence>VASRN-LEEAS</sequence>
<secondary-structure>EEEEE-HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 2155 CA VAL B 38 39.035 55.799 19.062 1.00 26.32 C </line>
<line>ATOM 2162 CA ALA B 39 35.714 54.801 20.639 1.00 26.53 C </line>
<line>ATOM 2167 CA SER B 40 35.139 52.277 23.425 1.00 29.74 C </line>
<line>ATOM 2173 CA ARG B 41 33.269 52.103 26.735 1.00 30.65 C </line>
<line>ATOM 2184 CA ASN B 42 36.328 53.153 28.760 1.00 27.38 C </line>
<line>ATOM 2192 CA LEU B 43 37.379 56.780 28.168 1.00 28.02 C </line>
<line>ATOM 2200 CA GLU B 44 40.844 56.483 29.802 1.00 27.27 C </line>
<line>ATOM 2209 CA GLU B 45 41.683 53.401 27.720 1.00 29.53 C </line>
<line>ATOM 2218 CA ALA B 46 40.419 55.042 24.499 1.00 24.01 C </line>
<line>ATOM 2223 CA SER B 47 42.473 58.178 25.311 1.00 27.03 C </line>
</atom-coordinate>
<distance-map>
<line> SER ALA GLU GLU LEU ASN ARG SER ALA VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 7.52 5.66 9.37 10.91 9.31 10.41 10.29 6.83 3.81 </line>
<line>ALA CA 8.88 6.09 9.37 10.64 7.96 8.31 7.10 3.80 </line>
<line>SER CA 9.60 6.06 7.91 9.53 6.91 5.54 3.81 </line>
<line>ARG CA 11.12 8.05 8.57 9.27 6.39 3.82 </line>
<line>ASN CA 8.65 6.20 5.46 5.71 3.82 </line>
<line>LEU CA 6.01 5.07 5.49 3.84 </line>
<line>GLU CA 5.07 5.51 3.81 </line>
<line>GLU CA 5.41 3.83 </line>
<line>ALA CA 3.84 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>VAL CA 478</line>
<line>ALA CA 467</line>
<line>SER CA 394</line>
<line>ARG CA 307</line>
<line>ASN CA 232</line>
<line>LEU CA 233</line>
<line>GLU CA 194</line>
<line>GLU CA 241</line>
<line>ALA CA 324</line>
<line>SER CA 282</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2UVD</pdbID>
<pdbChain>E</pdbChain>
<entryIDChain>2UVDE</entryIDChain>
<sequence>VNYAGNEQKAN</sequence>
<secondary-structure>EEE HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 7539 CA VAL E 33 10.077 13.013 34.052 1.00 46.53 C </line>
<line>ATOM 7546 CA ASN E 34 12.865 10.419 33.883 1.00 55.73 C </line>
<line>ATOM 7554 CA TYR E 35 12.394 6.828 35.043 1.00 54.53 C </line>
<line>ATOM 7566 CA ALA E 36 14.342 3.574 34.885 1.00 59.14 C </line>
<line>ATOM 7571 CA GLY E 37 11.383 1.220 34.927 1.00 74.22 C </line>
<line>ATOM 7575 CA ASN E 38 7.673 1.611 35.784 1.00 77.55 C </line>
<line>ATOM 7583 CA GLU E 39 6.268 3.634 32.907 1.00 67.50 C </line>
<line>ATOM 7592 CA GLN E 40 2.844 3.720 34.583 1.00 67.05 C </line>
<line>ATOM 7601 CA LYS E 41 4.056 5.752 37.602 1.00 55.41 C </line>
<line>ATOM 7610 CA ALA E 42 6.045 8.161 35.403 1.00 55.39 C </line>
<line>ATOM 7615 CA ASN E 43 2.933 8.584 33.246 1.00 55.81 C </line>
</atom-coordinate>
<distance-map>
<line> ASN ALA LYS GLN GLU ASN GLY ALA TYR ASN VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 8.44 6.45 10.08 11.79 10.19 11.78 11.90 10.39 6.68 3.81 </line>
<line>ASN CA 10.12 7.34 10.64 12.07 9.51 10.40 9.38 7.07 3.80 </line>
<line>TYR CA 9.79 6.50 8.79 10.05 7.23 7.07 5.70 3.80 </line>
<line>ALA CA 12.57 9.49 10.86 11.50 8.31 7.01 3.78 </line>
<line>GLY CA 11.33 8.77 9.02 8.90 6.01 3.83 </line>
<line>ASN CA 8.81 6.76 5.79 5.40 3.79 </line>
<line>GLU CA 5.98 5.17 5.61 3.81 </line>
<line>GLN CA 5.05 5.54 3.84 </line>
<line>LYS CA 5.32 3.82 </line>
<line>ALA CA 3.81 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>VAL CA 495</line>
<line>ASN CA 466</line>
<line>TYR CA 384</line>
<line>ALA CA 313</line>
<line>GLY CA 226</line>
<line>ASN CA 194</line>
<line>GLU CA 214</line>
<line>GLN CA 194</line>
<line>LYS CA 248</line>
<line>ALA CA 321</line>
<line>ASN CA 277</line>
</n14>
</entryChain>
<parallel>
<x>28.145000457763672</x>
<y>48.33000183105469</y>
<z>-9.196000099182129</z>
</parallel>
<rotation>
<x>-0.8199999928474426</x>
<y>-0.4359999895095825</y>
<z>-0.3720000088214874</z>
<x>0.3330000042915344</x>
<y>0.16500000655651093</y>
<z>-0.9279999732971191</z>
<x>0.4659999907016754</x>
<y>-0.8849999904632568</y>
<z>0.009999999776482582</z>
</rotation>
<rmsd>1.244223952293396</rmsd>
<dmax>2.289954900741577</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2UVD</pdbID>
<pdbChain>E</pdbChain>
<entryIDChain>2UVDE</entryIDChain>
<sequence>EIKKL-GSDAI</sequence>
<secondary-structure>HHHH - E</secondary-structure>
<atom-coordinate>
<line>ATOM 7654 CA GLU E 48 -0.586 15.509 37.062 1.00 61.99 C </line>
<line>ATOM 7663 CA ILE E 49 1.770 18.114 35.588 1.00 58.49 C </line>
<line>ATOM 7671 CA LYS E 50 -0.524 18.574 32.590 1.00 57.60 C </line>
<line>ATOM 7680 CA LYS E 51 -3.520 18.944 34.934 1.00 65.63 C </line>
<line>ATOM 7689 CA LEU E 52 -1.883 21.925 36.603 1.00 64.92 C </line>
<line>ATOM 7697 CA GLY E 53 -1.337 23.710 33.280 1.00 59.97 C </line>
<line>ATOM 7701 CA SER E 54 2.243 22.826 32.439 1.00 59.54 C </line>
<line>ATOM 7707 CA ASP E 55 3.705 20.329 29.930 1.00 56.93 C </line>
<line>ATOM 7715 CA ALA E 56 5.701 17.170 30.514 1.00 55.00 C </line>
<line>ATOM 7720 CA ILE E 57 7.012 13.958 28.976 1.00 52.45 C </line>
</atom-coordinate>
<distance-map>
<line> ILE ALA ASP SER GLY LEU LYS LYS ILE GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 11.20 9.23 9.62 9.11 9.06 6.56 4.99 5.42 3.81 </line>
<line>ILE CA 9.41 6.49 6.38 5.69 6.80 5.38 5.39 3.80 </line>
<line>LYS CA 9.55 6.71 5.30 5.08 5.25 5.40 3.82 </line>
<line>LYS CA 13.09 10.38 8.90 7.38 5.50 3.79 </line>
<line>LEU CA 14.17 10.83 8.85 5.93 3.81 </line>
<line>GLY CA 13.54 10.00 6.93 3.78 </line>
<line>SER CA 10.65 6.90 3.83 </line>
<line>ASP CA 7.24 3.78 </line>
<line>ALA CA 3.79 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>GLU CA 266</line>
<line>ILE CA 312</line>
<line>LYS CA 235</line>
<line>LYS CA 179</line>
<line>LEU CA 205</line>
<line>GLY CA 200</line>
<line>SER CA 270</line>
<line>ASP CA 306</line>
<line>ALA CA 402</line>
<line>ILE CA 383</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1VL8</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1VL8B</entryIDChain>
<sequence>KLTEKYGVETM</sequence>
<secondary-structure>HHHH E</secondary-structure>
<atom-coordinate>
<line>ATOM 2254 CA LYS B 52 49.852 56.272 21.528 1.00 30.45 C </line>
<line>ATOM 2263 CA LEU B 53 48.637 56.702 17.918 1.00 28.41 C </line>
<line>ATOM 2271 CA THR B 54 49.546 60.398 17.860 1.00 26.68 C </line>
<line>ATOM 2278 CA GLU B 55 52.913 59.773 19.566 1.00 31.37 C </line>
<line>ATOM 2287 CA LYS B 56 54.011 56.943 17.301 1.00 31.27 C </line>
<line>ATOM 2296 CA TYR B 57 52.503 58.085 13.984 1.00 29.47 C </line>
<line>ATOM 2308 CA GLY B 58 52.152 61.860 14.323 1.00 28.16 C </line>
<line>ATOM 2312 CA VAL B 59 48.472 61.897 13.338 1.00 26.77 C </line>
<line>ATOM 2319 CA GLU B 60 45.578 63.794 14.888 1.00 30.87 C </line>
<line>ATOM 2328 CA THR B 61 43.385 61.679 17.183 1.00 25.01 C </line>
<line>ATOM 2335 CA MET B 62 40.310 61.883 19.378 1.00 30.94 C </line>
</atom-coordinate>
<distance-map>
<line> MET THR GLU VAL GLY TYR LYS GLU THR LEU LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 11.28 9.48 10.91 10.03 9.40 8.20 5.97 5.05 5.53 3.83 </line>
<line>LEU CA 9.92 7.27 8.30 6.93 7.20 5.69 5.41 5.52 3.81 </line>
<line>THR CA 9.48 6.33 6.01 4.88 4.63 5.40 5.67 3.83 </line>
<line>GLU CA 12.78 10.00 9.58 7.94 5.69 5.85 3.79 </line>
<line>LYS CA 14.71 11.63 11.13 8.42 6.04 3.82 </line>
<line>TYR CA 13.86 10.31 9.02 5.59 3.81 </line>
<line>GLY CA 12.88 9.22 6.88 3.81 </line>
<line>VAL CA 10.15 6.38 3.79 </line>
<line>GLU CA 7.18 3.81 </line>
<line>THR CA 3.78 </line>
<line>MET CA </line>
</distance-map>
<n14>
<line>LYS CA 267</line>
<line>LEU CA 320</line>
<line>THR CA 269</line>
<line>GLU CA 188</line>
<line>LYS CA 195</line>
<line>TYR CA 244</line>
<line>GLY CA 211</line>
<line>VAL CA 284</line>
<line>GLU CA 310</line>
<line>THR CA 389</line>
<line>MET CA 384</line>
</n14>
</entryChain>
<parallel>
<x>-50.1619987487793</x>
<y>-39.7140007019043</y>
<z>16.96299934387207</z>
</parallel>
<rotation>
<x>-0.8450000286102295</x>
<y>0.4410000145435333</y>
<z>0.30300000309944153</z>
<x>-0.2529999911785126</x>
<y>0.17100000381469727</y>
<z>-0.9520000219345093</z>
<x>-0.47099998593330383</x>
<y>-0.8809999823570251</y>
<z>-0.032999999821186066</z>
</rotation>
<rmsd>0.9695850014686584</rmsd>
<dmax>1.7271850109100342</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2UVD</pdbID>
<pdbChain>E</pdbChain>
<entryIDChain>2UVDE</entryIDChain>
<sequence>VGVTG-NPGQA</sequence>
<secondary-structure>HHHH - H</secondary-structure>
<atom-coordinate>
<line>ATOM 8392 CA VAL E 143 24.327 10.247 55.613 1.00 60.24 C </line>
<line>ATOM 8399 CA GLY E 144 27.013 11.376 53.121 1.00 59.70 C </line>
<line>ATOM 8403 CA VAL E 145 28.134 13.974 55.703 1.00 60.93 C </line>
<line>ATOM 8410 CA THR E 146 28.087 11.834 58.888 1.00 53.29 C </line>
<line>ATOM 8417 CA GLY E 147 28.483 8.229 57.704 1.00 55.24 C </line>
<line>ATOM 8421 CA ASN E 148 26.060 5.425 58.587 1.00 57.11 C </line>
<line>ATOM 8429 CA PRO E 149 26.700 1.767 59.608 1.00 58.43 C </line>
<line>ATOM 8436 CA GLY E 150 24.593 -0.091 57.007 1.00 59.80 C </line>
<line>ATOM 8440 CA GLN E 151 25.524 1.964 54.003 1.00 54.10 C </line>
<line>ATOM 8449 CA ALA E 152 29.194 2.096 53.005 1.00 48.29 C </line>
</atom-coordinate>
<distance-map>
<line> ALA GLN GLY PRO ASN GLY THR VAL GLY VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 9.85 8.52 10.43 9.67 5.92 5.07 5.23 5.33 3.83 </line>
<line>GLY CA 9.53 9.57 12.35 11.60 8.14 5.75 5.88 3.83 </line>
<line>VAL CA 12.23 12.41 14.56 12.90 9.26 6.09 3.84 </line>
<line>THR CA 11.43 11.31 12.57 10.19 6.73 3.82 </line>
<line>GLY CA 7.76 7.86 9.21 6.97 3.81 </line>
<line>ASN CA 7.22 5.77 5.92 3.85 </line>
<line>PRO CA 7.07 5.73 3.83 </line>
<line>GLY CA 6.48 3.76 </line>
<line>GLN CA 3.81 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>VAL CA 348</line>
<line>GLY CA 347</line>
<line>VAL CA 279</line>
<line>THR CA 239</line>
<line>GLY CA 238</line>
<line>ASN CA 250</line>
<line>PRO CA 212</line>
<line>GLY CA 247</line>
<line>GLN CA 305</line>
<line>ALA CA 292</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1VL8</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1VL8B</entryIDChain>
<sequence>TVEEVTMPNIS</sequence>
<secondary-structure> H</secondary-structure>
<atom-coordinate>
<line>ATOM 3029 CA THR B 148 31.464 32.163 12.401 1.00 29.76 C </line>
<line>ATOM 3036 CA VAL B 149 30.290 33.947 9.292 1.00 32.93 C </line>
<line>ATOM 3043 CA GLU B 150 31.210 30.655 7.524 1.00 34.13 C </line>
<line>ATOM 3052 CA GLU B 151 31.694 28.017 10.239 1.00 31.59 C </line>
<line>ATOM 3061 CA VAL B 152 31.323 27.601 13.997 1.00 27.14 C </line>
<line>ATOM 3068 CA THR B 153 34.477 25.947 15.137 1.00 32.31 C </line>
<line>ATOM 3075 CA MET B 154 33.839 26.116 18.920 1.00 30.55 C </line>
<line>ATOM 3083 CA PRO B 155 30.893 25.183 21.055 1.00 30.91 C </line>
<line>ATOM 3090 CA ASN B 156 29.084 27.686 23.311 1.00 26.28 C </line>
<line>ATOM 3098 CA ILE B 157 29.175 30.723 21.038 1.00 25.68 C </line>
<line>ATOM 3106 CA SER B 158 25.647 30.640 19.444 1.00 26.62 C </line>
</atom-coordinate>
<distance-map>
<line> SER ILE ASN PRO MET THR VAL GLU GLU VAL THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 9.26 9.05 12.03 11.13 9.20 7.43 4.84 4.68 5.11 3.77 </line>
<line>VAL CA 11.64 12.23 15.40 14.68 12.91 10.76 7.97 6.17 3.85 </line>
<line>GLU CA 13.15 13.67 16.20 14.60 12.55 9.53 7.16 3.82 </line>
<line>GLU CA 11.32 11.41 13.33 11.21 9.14 6.00 3.80 </line>
<line>VAL CA 8.43 8.00 9.58 7.47 5.72 3.74 </line>
<line>THR CA 10.89 9.26 9.95 6.96 3.84 </line>
<line>MET CA 9.37 6.89 6.66 3.76 </line>
<line>PRO CA 7.74 5.80 3.82 </line>
<line>ASN CA 5.96 3.79 </line>
<line>ILE CA 3.87 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>THR CA 376</line>
<line>VAL CA 344</line>
<line>GLU CA 293</line>
<line>GLU CA 286</line>
<line>VAL CA 289</line>
<line>THR CA 332</line>
<line>MET CA 320</line>
<line>PRO CA 258</line>
<line>ASN CA 267</line>
<line>ILE CA 344</line>
<line>SER CA 319</line>
</n14>
</entryChain>
<parallel>
<x>-4.550000190734863</x>
<y>-21.076000213623047</y>
<z>42.4370002746582</z>
</parallel>
<rotation>
<x>-0.6499999761581421</x>
<y>0.32899999618530273</y>
<z>0.6850000023841858</z>
<x>-0.6359999775886536</x>
<y>0.257999986410141</y>
<z>-0.7269999980926514</z>
<x>-0.41600000858306885</x>
<y>-0.9079999923706055</y>
<z>0.04100000113248825</z>
</rotation>
<rmsd>1.680564045906067</rmsd>
<dmax>3.0190820693969727</dmax>
</indel>