NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1XICA-4XIMD
confEVID 1XICA-4XIMD
pdbIDA 1XIC
pdbIDB 4XIM
pdbChainA A
pdbChainB D
identity 0.670099973678589
indelSize 2
alignment <alignment>
<seq1>YQPTPEDRFTFGLWTVGWQGRDPFGDATRRALDPVESVQRLAELGAHGVTFHDDDLIPFGSSDSEREEHVKRFRQALDDTGMKVPMATTNLFTHPVFKDGGFTANDRDVRRYALRKTIRNIDLAVELGAETYVAWGGREGAESGGAKDVRDALDRMKEAFDLLGEYVTSQGYDIRFAIEPKPNEPRGDILLPTVGHALAFIERLERPELYGVNPEVGHEQMAGLNFPHGIAQALWAGKLFHIDLNGQNGIKYDQDLRFGAGDLRAAFWLVDLLES-----AGYSGPRHFDFKPPRTEDFDGVWASAAGCMRNYLILKERAAAFRADPEVQEALRASRLDELARPTAA--DGLQALLDDRSAFEEFDVDAAAARGMAFERLDQLAMDHLLGAR</seq1>
<seq2>-QATREDKFSFGLWTVGWQARDAFGDATRTALDPVEAVHKLAEIGAYGITFHDDDLVPFGSDAQTRDGIIAGFKKALDETGLIVPMVTTNLFTHPVFKDGGFTSNDRSVRRYAIRKVLRQMDLGAELGAKTLVLWGGREGAEYDSAKDVSAALDRYREALNLLAQYSEDRGYGLRFAIEPKPNEPRGDILLPTAGHAIAFVQELERPELFGINPETGHEQMSNLNFTQGIAQALWHKKLFHIDLNGQHGPKFDQDLVFGHGDLLNAFSLVDLLENGPDGAPAYDGPRHFDYKPSRTEDYDGVWESAKANIRMYLLLKERAKAFRADPEVQEALAASKVAELKTPTLNPGEGYAELLADRSAFEDYDADAVGAKGFGFVKLNQLAIEHLLGAR</seq2>
<ss_1> EEEEHHHH HHHHHHHHHH EEEEEHHHH HHHHHHHHHHHHHHHHH EE HHHHHHHHHHHHHHHHHHHH EEEEEE EEE GGG HHHHHHHHHHHHHHHHHHHHH EEEE HHHHHHHGGG EE HHHHH HHHHHHHHHH EEEE HHHHHHHHHHHHH----- EEE HHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHH HHHH -- HHHHHH HHHHH HHHHHHHHHHHH </ss_1>
<ss_2>- EEEEHHHH HHHHHHHHHH EEEEEHHHH HHHHHHHHHHHHHHHHH EE HHHHHHHHHHHHHHHHHHHH EEEEEE EEE GGG HHHHHHHHHHHHHHHHHHHHH EEEE HHHHHHHGGG EE HHHHH HHHHHHHHHH EEEE HHHHHHHHHHHH EEE HHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHH GGGG HHHHH HHHGGG HHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1XIC</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1XICA</entryIDChain>
<sequence>DLLES-----AGYSG</sequence>
<secondary-structure>HHHHH----- </secondary-structure>
<atom-coordinate>
<line>ATOM 2140 CA ASP A 273 32.927 50.707 73.910 1.00 5.00 C </line>
<line>ATOM 2148 CA LEU A 274 30.281 50.744 71.155 1.00 5.00 C </line>
<line>ATOM 2156 CA LEU A 275 29.025 47.151 71.553 1.00 5.29 C </line>
<line>ATOM 2164 CA GLU A 276 28.551 47.550 75.297 1.00 8.95 C </line>
<line>ATOM 2173 CA SER A 277 27.103 51.048 75.103 1.00 11.71 C </line>
<line>ATOM 2179 CA ALA A 278 24.544 50.127 72.324 1.00 10.12 C </line>
<line>ATOM 2184 CA GLY A 279 23.698 46.938 74.306 1.00 15.89 C </line>
<line>ATOM 2188 CA TYR A 280 24.442 44.414 71.547 1.00 11.12 C </line>
<line>ATOM 2200 CA SER A 281 23.274 41.096 73.014 1.00 13.79 C </line>
<line>ATOM 2206 CA GLY A 282 24.356 38.598 70.381 1.00 10.24 C </line>
</atom-coordinate>
<distance-map>
<line> GLY SER TYR GLY ALA SER GLU LEU LEU ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 15.25 13.65 10.83 9.98 8.55 5.95 5.57 5.78 3.82 </line>
<line>LEU CA 13.54 12.07 8.62 8.23 5.89 5.08 5.51 3.83 </line>
<line>LEU CA 9.81 8.48 5.34 6.00 5.43 5.61 3.79 </line>
<line>GLU CA 11.04 8.64 6.39 4.99 5.62 3.79 </line>
<line>SER CA 13.60 10.87 7.98 5.40 3.89 </line>
<line>ALA CA 11.69 9.15 5.77 3.85 </line>
<line>GLY CA 9.24 6.00 3.81 </line>
<line>TYR CA 5.93 3.81 </line>
<line>SER CA 3.79 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>ASP CA 394</line>
<line>LEU CA 356</line>
<line>LEU CA 404</line>
<line>GLU CA 324</line>
<line>SER CA 255</line>
<line>ALA CA 244</line>
<line>GLY CA 227</line>
<line>TYR CA 313</line>
<line>SER CA 291</line>
<line>GLY CA 397</line>
</n14>
</entryChain>
<entryChain>
<pdbID>4XIM</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>4XIMD</entryIDChain>
<sequence>DLLENGPDGAPAYDG</sequence>
<secondary-structure>HHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 11213 CA ASP D 273 8.466 63.897 155.930 1.00 18.34 C </line>
<line>ATOM 11221 CA LEU D 274 6.814 65.149 159.198 1.00 14.48 C </line>
<line>ATOM 11229 CA LEU D 275 6.527 68.793 158.047 1.00 16.17 C </line>
<line>ATOM 11237 CA GLU D 276 5.226 68.193 154.510 1.00 20.33 C </line>
<line>ATOM 11246 CA ASN D 277 3.313 64.910 154.622 1.00 28.07 C </line>
<line>ATOM 11254 CA GLY D 278 1.039 66.217 157.284 1.00 45.36 C </line>
<line>ATOM 11258 CA PRO D 279 -2.497 65.092 157.972 1.00 60.37 C </line>
<line>ATOM 11265 CA ASP D 280 -4.854 65.654 155.059 1.00 64.84 C </line>
<line>ATOM 11270 CA GLY D 281 -2.185 65.525 152.307 1.00 61.33 C </line>
<line>ATOM 11274 CA ALA D 282 -1.111 69.003 153.342 1.00 47.75 C </line>
<line>ATOM 11279 CA PRO D 283 1.892 70.130 155.377 1.00 34.76 C </line>
<line>ATOM 11286 CA ALA D 284 1.684 69.843 159.146 1.00 26.11 C </line>
<line>ATOM 11291 CA TYR D 285 3.527 73.191 159.364 1.00 20.83 C </line>
<line>ATOM 11303 CA ASP D 286 3.008 76.345 157.359 1.00 25.71 C </line>
<line>ATOM 11311 CA GLY D 287 5.494 78.955 158.749 1.00 19.18 C </line>
</atom-coordinate>
<distance-map>
<line> GLY ASP TYR ALA PRO ALA GLY ASP PRO GLY ASN GLU LEU LEU ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 15.61 13.67 11.07 9.58 9.08 11.16 11.37 13.46 11.22 7.90 5.41 5.57 5.68 3.87 </line>
<line>LEU CA 13.88 11.97 8.69 6.95 7.98 10.58 11.34 12.39 9.39 6.18 5.77 5.81 3.83 </line>
<line>LEU CA 10.24 8.36 5.48 5.08 5.51 8.97 10.93 12.18 9.75 6.11 6.09 3.82 </line>
<line>GLU CA 11.57 8.92 7.17 6.06 3.95 6.49 8.18 10.41 9.01 5.40 3.80 </line>
<line>ASN CA 14.80 11.76 9.55 6.89 5.46 6.16 6.00 8.21 6.71 3.74 </line>
<line>GLY CA 13.57 10.32 7.69 4.13 4.44 5.28 5.97 6.32 3.77 </line>
<line>PRO CA 16.02 12.54 10.19 6.44 7.17 6.22 5.69 3.79 </line>
<line>ASP CA 17.25 13.47 12.07 8.77 8.10 5.31 3.84 </line>
<line>GLY CA 16.76 13.02 11.88 8.97 6.87 3.78 </line>
<line>ALA CA 13.11 9.33 8.68 6.50 3.80 </line>
<line>PRO CA 10.11 6.62 5.29 3.79 </line>
<line>ALA CA 9.88 6.87 3.83 </line>
<line>TYR CA 6.12 3.77 </line>
<line>ASP CA 3.86 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>ASP CA 422</line>
<line>LEU CA 389</line>
<line>LEU CA 424</line>
<line>GLU CA 353</line>
<line>ASN CA 290</line>
<line>GLY CA 264</line>
<line>PRO CA 182</line>
<line>ASP CA 116</line>
<line>GLY CA 155</line>
<line>ALA CA 178</line>
<line>PRO CA 275</line>
<line>ALA CA 297</line>
<line>TYR CA 357</line>
<line>ASP CA 336</line>
<line>GLY CA 408</line>
</n14>
</entryChain>
<parallel>
<x>22.889999389648438</x>
<y>-19.42799949645996</y>
<z>-83.875</z>
</parallel>
<rotation>
<x>0.9110000133514404</x>
<y>-0.4059999883174896</y>
<z>-0.07900000363588333</z>
<x>-0.4009999930858612</x>
<y>-0.9129999876022339</y>
<z>0.0729999989271164</z>
<x>-0.10199999809265137</x>
<y>-0.03500000014901161</y>
<z>-0.9940000176429749</z>
</rotation>
<rmsd>1.8184560537338257</rmsd>
<dmax>3.6484639644622803</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1XIC</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1XICA</entryIDChain>
<sequence>RPTAA--DGLQA</sequence>
<secondary-structure> -- HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 2668 CA ARG A 340 19.965 67.042 69.557 1.00 5.75 C </line>
<line>ATOM 2679 CA PRO A 341 17.934 67.557 66.355 1.00 8.10 C </line>
<line>ATOM 2686 CA THR A 342 19.286 70.185 64.027 1.00 6.29 C </line>
<line>ATOM 2693 CA ALA A 343 15.834 71.515 63.127 1.00 10.98 C </line>
<line>ATOM 2698 CA ALA A 344 13.010 70.030 65.191 1.00 16.44 C </line>
<line>ATOM 2703 CA ASP A 345 11.410 73.485 64.566 1.00 19.33 C </line>
<line>ATOM 2711 CA GLY A 346 10.955 72.321 60.924 1.00 12.14 C </line>
<line>ATOM 2715 CA LEU A 347 11.887 73.593 57.514 1.00 13.88 C </line>
<line>ATOM 2723 CA GLN A 348 9.906 76.841 57.416 1.00 13.77 C </line>
<line>ATOM 2732 CA ALA A 349 11.183 77.915 60.784 1.00 15.20 C </line>
</atom-coordinate>
<distance-map>
<line> ALA GLN LEU GLY ASP ALA ALA THR PRO ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 16.50 18.56 15.91 13.55 11.82 8.74 8.86 6.40 3.83 </line>
<line>PRO CA 13.56 15.18 12.29 10.04 8.99 5.63 5.52 3.76 </line>
<line>THR CA 11.66 13.27 10.43 9.14 8.56 6.38 3.81 </line>
<line>ALA CA 8.25 9.80 7.17 5.41 5.05 3.80 </line>
<line>ALA CA 9.22 10.79 8.54 5.26 3.86 </line>
<line>ASP CA 5.83 8.04 7.07 3.85 </line>
<line>GLY CA 5.60 5.82 3.76 </line>
<line>LEU CA 5.47 3.81 </line>
<line>GLN CA 3.76 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ARG CA 112</line>
<line>PRO CA 115</line>
<line>THR CA 149</line>
<line>ALA CA 142</line>
<line>ALA CA 111</line>
<line>ASP CA 113</line>
<line>GLY CA 100</line>
<line>LEU CA 107</line>
<line>GLN CA 106</line>
<line>ALA CA 123</line>
</n14>
</entryChain>
<entryChain>
<pdbID>4XIM</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>4XIMD</entryIDChain>
<sequence>TPTLNPGEGYAE</sequence>
<secondary-structure> HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 11778 CA THR D 345 -7.253 54.374 167.131 1.00 18.92 C </line>
<line>ATOM 11785 CA PRO D 346 -8.290 55.129 170.713 1.00 19.19 C </line>
<line>ATOM 11792 CA THR D 347 -7.323 52.411 173.215 1.00 20.99 C </line>
<line>ATOM 11799 CA LEU D 348 -10.741 52.510 174.797 1.00 24.16 C </line>
<line>ATOM 11807 CA ASN D 349 -13.861 51.793 172.835 1.00 32.04 C </line>
<line>ATOM 11815 CA PRO D 350 -16.384 54.566 172.363 1.00 36.60 C </line>
<line>ATOM 11822 CA GLY D 351 -18.113 55.105 175.656 1.00 39.60 C </line>
<line>ATOM 11826 CA GLU D 352 -15.898 52.517 177.418 1.00 37.05 C </line>
<line>ATOM 11835 CA GLY D 353 -14.696 53.617 180.881 1.00 31.94 C </line>
<line>ATOM 11839 CA TYR D 354 -12.646 51.901 183.575 1.00 30.48 C </line>
<line>ATOM 11851 CA ALA D 355 -15.698 50.002 184.690 1.00 30.50 C </line>
<line>ATOM 11856 CA GLU D 356 -16.095 48.378 181.303 1.00 32.49 C </line>
</atom-coordinate>
<distance-map>
<line> GLU ALA TYR GLY GLU GLY PRO ASN LEU THR PRO THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 17.75 19.97 17.48 15.65 13.56 13.83 10.53 9.10 8.63 6.39 3.80 </line>
<line>PRO CA 14.79 16.63 13.96 12.11 10.47 11.00 8.28 6.83 5.44 3.82 </line>
<line>THR CA 12.59 14.41 11.66 10.70 9.55 11.39 9.35 6.58 3.77 </line>
<line>LEU CA 9.38 11.35 9.00 7.34 5.78 7.86 6.48 3.75 </line>
<line>ASN CA 9.40 12.13 10.81 8.29 5.07 6.08 3.78 </line>
<line>PRO CA 10.88 13.16 12.12 8.74 5.48 3.76 </line>
<line>GLY CA 9.01 10.65 10.14 6.42 3.84 </line>
<line>GLU CA 5.68 7.70 6.99 3.83 </line>
<line>GLY CA 5.44 5.35 3.80 </line>
<line>TYR CA 5.43 3.76 </line>
<line>ALA CA 3.78 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>THR CA 114</line>
<line>PRO CA 116</line>
<line>THR CA 155</line>
<line>LEU CA 154</line>
<line>ASN CA 137</line>
<line>PRO CA 99</line>
<line>GLY CA 101</line>
<line>GLU CA 122</line>
<line>GLY CA 114</line>
<line>TYR CA 126</line>
<line>ALA CA 118</line>
<line>GLU CA 135</line>
</n14>
</entryChain>
<parallel>
<x>26.374000549316406</x>
<y>17.684999465942383</y>
<z>-111.16300201416016</z>
</parallel>
<rotation>
<x>0.9129999876022339</x>
<y>-0.20600000023841858</y>
<z>-0.35199999809265137</z>
<x>-0.2849999964237213</x>
<y>-0.9399999976158142</y>
<z>-0.18799999356269836</z>
<x>-0.2919999957084656</x>
<y>0.2720000147819519</y>
<z>-0.9169999957084656</z>
</rotation>
<rmsd>1.434535026550293</rmsd>
<dmax>2.682029962539673</dmax>
</indel>