NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1YDVA-1AG1T
confEVID 1YDVA-1AG1T
pdbIDA 1YDV
pdbIDB 1AG1
pdbChainA A
pdbChainB T
identity 0.411799997091293
indelSize 2
alignment <alignment>
<seq1>--RKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRKLLQ-SKFSTGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAF--------VDLIDNFDNVILVYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLKESFVDIIKSAM</seq1>
<seq2>SKPQPIAAANWKCNGSQQSLSELIDLFNSTSIN-HDVQCVVASTFVHLAMTKERLSHPKFVIAAQNAIAK-SGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAK------VVIAYEPVWAIGTGKVATPQQAQEAHALIRSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVGGASLKPEFVDIIKATQ</seq2>
<ss_1>-- EEEE HHHHHHHHHHGGG EEEEE GGGHHHHHHH - EEEE HHHHHH EEEE HHHH HHHHHHHHHHHH EEEEEE HHHHH HHHHHHHHHH --------GGG EEE HHHHHHHHHHHHHHHHH HHHHHH EE HHHHH EEEE GGGG GGGHHHHH </ss_1>
<ss_2> EEEE HHHHHHHHHHHH - EEEE GGGHHHHHHH EEEE - HHHH EEEE HHHHH HHHHHHHHHHHHH EEEEEE HHHH HHHHHHHHHHHHHH GGGGGG------EEEEE HHHHHHHHHHHHHHH HHHH EEEE HHHHHHHH EEEE GGGG HHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1AG1</pdbID>
<pdbChain>T</pdbChain>
<entryIDChain>1AG1T</entryIDChain>
<sequence>STSIN-HDVQC</sequence>
<secondary-structure> - E</secondary-structure>
<atom-coordinate>
<line>ATOM 2100 CA SER T 30 25.792 13.790 -22.118 1.00 35.38 C </line>
<line>ATOM 2106 CA THR T 31 28.616 11.334 -22.298 1.00 43.29 C </line>
<line>ATOM 2113 CA SER T 32 27.977 7.676 -23.003 1.00 35.78 C </line>
<line>ATOM 2119 CA ILE T 33 29.929 5.001 -21.302 1.00 45.40 C </line>
<line>ATOM 2127 CA ASN T 34 29.161 1.512 -22.316 1.00 54.03 C </line>
<line>ATOM 2135 CA HIS T 35 31.836 -0.170 -20.233 1.00 21.75 C </line>
<line>ATOM 2145 CA ASP T 36 32.326 -0.807 -16.533 1.00 34.34 C </line>
<line>ATOM 2153 CA VAL T 37 34.175 2.071 -14.915 1.00 26.40 C </line>
<line>ATOM 2160 CA GLN T 38 33.329 4.132 -11.873 1.00 20.47 C </line>
<line>ATOM 2169 CA CYS T 39 33.787 7.896 -12.490 1.00 20.83 C </line>
</atom-coordinate>
<distance-map>
<line> CYS GLN VAL ASP HIS ASN ILE SER THR SER </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 13.83 15.97 16.11 16.94 15.33 12.73 9.75 6.55 3.75 </line>
<line>THR CA 11.61 13.52 13.08 13.94 12.12 9.84 6.54 3.78 </line>
<line>SER CA 12.01 12.85 11.63 11.52 9.17 6.31 3.72 </line>
<line>ILE CA 10.05 10.06 8.21 7.89 5.61 3.71 </line>
<line>ASN CA 12.60 11.55 8.96 6.99 3.78 </line>
<line>HIS CA 11.35 9.52 6.23 3.79 </line>
<line>ASP CA 9.71 6.86 3.78 </line>
<line>VAL CA 6.32 3.77 </line>
<line>GLN CA 3.84 </line>
<line>CYS CA </line>
</distance-map>
<n14>
<line>SER CA 217</line>
<line>THR CA 266</line>
<line>SER CA 226</line>
<line>ILE CA 262</line>
<line>ASN CA 187</line>
<line>HIS CA 219</line>
<line>ASP CA 253</line>
<line>VAL CA 352</line>
<line>GLN CA 410</line>
<line>CYS CA 493</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1YDV</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1YDVA</entryIDChain>
<sequence>NLDFDPSKLDV</sequence>
<secondary-structure>G EE</secondary-structure>
<atom-coordinate>
<line>ATOM 212 CA ASN A 29 28.577 16.289 3.271 1.00 8.63 C </line>
<line>ATOM 220 CA LEU A 30 25.168 14.585 3.457 1.00 14.20 C </line>
<line>ATOM 228 CA ASP A 31 22.128 16.859 3.341 1.00 17.80 C </line>
<line>ATOM 236 CA PHE A 32 19.261 15.635 5.557 1.00 16.42 C </line>
<line>ATOM 247 CA ASP A 33 16.813 16.894 8.196 1.00 14.21 C </line>
<line>ATOM 255 CA PRO A 34 17.376 15.632 11.781 1.00 9.47 C </line>
<line>ATOM 262 CA SER A 35 13.696 16.245 12.681 1.00 15.47 C </line>
<line>ATOM 268 CA LYS A 36 12.514 13.545 10.243 1.00 15.37 C </line>
<line>ATOM 277 CA LEU A 37 15.186 10.913 10.493 1.00 12.76 C </line>
<line>ATOM 285 CA ASP A 38 17.317 9.695 13.419 1.00 9.57 C </line>
<line>ATOM 293 CA VAL A 39 20.982 9.082 12.533 1.00 8.95 C </line>
</atom-coordinate>
<distance-map>
<line> VAL ASP LEU LYS SER PRO ASP PHE ASP LEU ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 13.98 16.53 16.14 17.72 17.61 14.08 12.77 9.61 6.47 3.82 </line>
<line>LEU CA 11.41 13.59 12.75 14.40 14.81 11.45 9.88 6.36 3.80 </line>
<line>ASP CA 12.09 13.27 11.61 12.29 12.60 9.76 7.20 3.82 </line>
<line>PHE CA 9.72 10.04 7.95 8.48 9.06 6.50 3.81 </line>
<line>ASP CA 9.86 8.91 6.61 5.82 5.50 3.84 </line>
<line>PRO CA 7.51 6.16 5.36 5.51 3.84 </line>
<line>SER CA 10.22 7.52 5.95 3.83 </line>
<line>LYS CA 9.84 6.93 3.76 </line>
<line>LEU CA 6.41 3.82 </line>
<line>ASP CA 3.82 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>ASN CA 235</line>
<line>LEU CA 278</line>
<line>ASP CA 228</line>
<line>PHE CA 254</line>
<line>ASP CA 216</line>
<line>PRO CA 259</line>
<line>SER CA 202</line>
<line>LYS CA 222</line>
<line>LEU CA 324</line>
<line>ASP CA 415</line>
<line>VAL CA 495</line>
</n14>
</entryChain>
<parallel>
<x>10.809000015258789</x>
<y>-10.069999694824219</y>
<z>-27.4950008392334</z>
</parallel>
<rotation>
<x>-0.6489999890327454</x>
<y>0.7480000257492065</y>
<z>0.1379999965429306</z>
<x>-0.5950000286102295</x>
<y>-0.38600000739097595</y>
<z>-0.7049999833106995</z>
<x>-0.4749999940395355</x>
<y>-0.5400000214576721</y>
<z>0.6949999928474426</z>
</rotation>
<rmsd>1.7653729915618896</rmsd>
<dmax>3.548206090927124</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1AG1</pdbID>
<pdbChain>T</pdbChain>
<entryIDChain>1AG1T</entryIDChain>
<sequence>NAIAK-SGAFT</sequence>
<secondary-structure> - </secondary-structure>
<atom-coordinate>
<line>ATOM 2377 CA ASN T 66 39.572 16.166 2.207 1.00 11.67 C </line>
<line>ATOM 2385 CA ALA T 67 38.014 16.270 5.686 1.00 7.89 C </line>
<line>ATOM 2390 CA ILE T 68 38.805 15.911 9.363 1.00 11.01 C </line>
<line>ATOM 2398 CA ALA T 69 37.537 12.934 11.419 1.00 23.65 C </line>
<line>ATOM 2403 CA LYS T 70 35.227 14.559 13.952 1.00 24.44 C </line>
<line>ATOM 2412 CA SER T 71 33.012 17.582 14.091 1.00 14.00 C </line>
<line>ATOM 2418 CA GLY T 72 33.825 20.250 16.648 1.00 11.44 C </line>
<line>ATOM 2422 CA ALA T 73 35.896 23.301 17.208 1.00 16.45 C </line>
<line>ATOM 2427 CA PHE T 74 37.899 23.370 14.021 1.00 13.46 C </line>
<line>ATOM 2438 CA THR T 75 37.036 26.665 12.307 1.00 17.85 C </line>
</atom-coordinate>
<distance-map>
<line> THR PHE ALA GLY SER LYS ALA ILE ALA ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 14.79 13.94 17.01 16.07 13.65 12.63 9.97 7.20 3.81 </line>
<line>ALA CA 12.36 10.95 13.66 12.39 9.87 8.89 6.65 3.78 </line>
<line>ILE CA 11.29 8.84 11.16 9.83 7.66 5.97 3.83 </line>
<line>ALA CA 13.77 10.76 11.99 9.73 7.02 3.79 </line>
<line>LYS CA 12.35 9.21 9.35 6.45 3.75 </line>
<line>SER CA 10.09 7.58 7.12 3.78 </line>
<line>GLY CA 8.38 5.76 3.73 </line>
<line>ALA CA 6.05 3.76 </line>
<line>PHE CA 3.81 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>ASN CA 472</line>
<line>ALA CA 433</line>
<line>ILE CA 343</line>
<line>ALA CA 310</line>
<line>LYS CA 228</line>
<line>SER CA 182</line>
<line>GLY CA 115</line>
<line>ALA CA 96</line>
<line>PHE CA 137</line>
<line>THR CA 105</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1YDV</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1YDVA</entryIDChain>
<sequence>NVSKFGNGSYT</sequence>
<secondary-structure> </secondary-structure>
<atom-coordinate>
<line>ATOM 504 CA ASN A 65 28.017 -0.108 26.433 1.00 4.81 C </line>
<line>ATOM 512 CA VAL A 66 26.853 1.051 29.884 1.00 4.61 C </line>
<line>ATOM 519 CA SER A 67 27.211 -0.366 33.420 1.00 4.70 C </line>
<line>ATOM 525 CA LYS A 68 24.489 -2.191 35.340 1.00 10.43 C </line>
<line>ATOM 534 CA PHE A 69 25.714 -0.544 38.545 1.00 11.34 C </line>
<line>ATOM 545 CA GLY A 70 25.775 3.114 39.413 1.00 12.05 C </line>
<line>ATOM 549 CA ASN A 71 28.713 5.272 40.412 1.00 16.00 C </line>
<line>ATOM 557 CA GLY A 72 31.119 3.530 42.767 1.00 11.65 C </line>
<line>ATOM 561 CA SER A 73 33.776 0.874 43.183 1.00 9.48 C </line>
<line>ATOM 567 CA TYR A 74 33.578 -0.724 39.732 1.00 8.74 C </line>
<line>ATOM 579 CA THR A 75 36.902 -0.237 37.946 1.00 2.43 C </line>
</atom-coordinate>
<distance-map>
<line> THR TYR SER GLY ASN GLY PHE LYS SER VAL ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 14.54 14.43 17.74 17.02 14.99 13.56 12.34 9.80 7.04 3.82 </line>
<line>VAL CA 12.95 12.06 14.99 13.80 11.49 9.81 8.88 6.77 3.83 </line>
<line>SER CA 10.70 8.97 11.83 10.85 9.11 7.08 5.34 3.80 </line>
<line>LYS CA 12.83 10.20 12.54 11.48 9.96 6.81 3.81 </line>
<line>PHE CA 11.21 7.96 9.41 7.98 6.80 3.76 </line>
<line>GLY CA 11.71 8.70 9.12 6.32 3.78 </line>
<line>ASN CA 10.17 7.75 7.26 3.79 </line>
<line>GLY CA 8.42 5.78 3.78 </line>
<line>SER CA 6.20 3.81 </line>
<line>TYR CA 3.80 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>ASN CA 470</line>
<line>VAL CA 454</line>
<line>SER CA 368</line>
<line>LYS CA 349</line>
<line>PHE CA 259</line>
<line>GLY CA 237</line>
<line>ASN CA 191</line>
<line>GLY CA 125</line>
<line>SER CA 104</line>
<line>TYR CA 134</line>
<line>THR CA 119</line>
</n14>
</entryChain>
<parallel>
<x>8.25</x>
<y>16.18199920654297</y>
<z>-24.926000595092773</z>
</parallel>
<rotation>
<x>0.27300000190734863</x>
<y>0.9620000123977661</y>
<z>0.026000000536441803</z>
<x>-0.9240000247955322</x>
<y>0.26899999380111694</y>
<z>-0.2720000147819519</z>
<x>-0.2680000066757202</x>
<y>0.05000000074505806</y>
<z>0.9620000123977661</z>
</rotation>
<rmsd>1.1934219598770142</rmsd>
<dmax>2.0472779273986816</dmax>
</indel>