NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1YDVA-1AW2H
confEVID 1YDVA-1AW2H
pdbIDA 1YDV
pdbIDB 1AW2
pdbChainA A
pdbChainB H
identity 0.380400002002716
indelSize 2
alignment <alignment>
<seq1>RKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRKLL---QSKFSTGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAF-----VDLIDNFDNVILVYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLK-ESFVDIIKSAM---</seq1>
<seq2>RHPVVMGNWKLNGSKEMVVDLLNGLNAELEGVTGVDVAVAPPALFVDLAERTLTEAGSAIILGAQNTDLNNSGAFTGDMSPAMLKEFGATHIIIGHSERREYHAESDEFVAKKFAFLKENGLTPVLCIGESDAQNEAGETMAVCARQLDAVINTQGVEAL---EGAIIAYEPIWAIGTGKAATAEDAQRIHAQIRAHIAEK-SEAVAKNVVIQYGGSVKPENAAAYFAQPDIDGALVGGAALDAKSFAAIAKAAAEAK</seq2>
<ss_1> EEEE HHHHHHHHHHGGG EEEEE GGGHHHHHHH --- EEEE HHHHHH EEEE HHHH HHHHHHHHHHHH EEEEEE HHHHH HHHHHHHHHH -----GGG EEE HHHHHHHHHHHHHHHHH HHHHHH EE HHHHH EEEE GGGG -GGGHHHHH ---</ss_1>
<ss_2> EEEE HHHHHHHHHHHHHH EEE HHHHHHHHHH EEEE HHHH EEEE HHHHH HHHHHHHHHHHHH EEEEEE HHHHH HHHHHHHHHHHHH GGGG--- EEE HHHHHHHHHHHHHHHH - HHHH EEE HHHHHHH EEEE GGGG HHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1YDV</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1YDVA</entryIDChain>
<sequence>NASLK-ESFVD</sequence>
<secondary-structure>GGGG -GGGHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1837 CA ASN A 233 31.411 -2.767 8.991 1.00 14.63 C </line>
<line>ATOM 1845 CA ALA A 234 29.759 -0.668 6.283 1.00 9.32 C </line>
<line>ATOM 1850 CA SER A 235 29.561 2.303 8.682 1.00 3.00 C </line>
<line>ATOM 1856 CA LEU A 236 33.374 2.553 8.641 1.00 11.93 C </line>
<line>ATOM 1864 CA LYS A 237 33.218 3.391 4.939 1.00 14.72 C </line>
<line>ATOM 1873 CA GLU A 238 32.410 6.691 3.227 1.00 19.30 C </line>
<line>ATOM 1882 CA SER A 239 29.671 4.876 1.285 1.00 11.68 C </line>
<line>ATOM 1888 CA PHE A 240 27.684 4.720 4.544 1.00 6.64 C </line>
<line>ATOM 1899 CA VAL A 241 25.961 7.893 3.271 1.00 9.94 C </line>
<line>ATOM 1906 CA ASP A 242 24.141 5.792 0.677 1.00 10.65 C </line>
</atom-coordinate>
<distance-map>
<line> ASP VAL PHE SER GLU LYS LEU SER ALA ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 13.97 13.27 9.47 10.99 11.12 7.59 5.68 5.41 3.80 </line>
<line>ALA CA 10.23 9.84 6.03 7.46 8.40 5.50 5.39 3.82 </line>
<line>SER CA 10.28 8.57 5.15 7.83 7.56 5.34 3.82 </line>
<line>LEU CA 12.62 10.60 7.34 8.56 6.88 3.80 </line>
<line>LYS CA 10.31 8.70 5.71 5.30 3.80 </line>
<line>GLU CA 8.70 6.56 5.29 3.82 </line>
<line>SER CA 5.64 5.18 3.82 </line>
<line>PHE CA 5.35 3.83 </line>
<line>VAL CA 3.80 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>ASN CA 306</line>
<line>ALA CA 326</line>
<line>SER CA 409</line>
<line>LEU CA 349</line>
<line>LYS CA 300</line>
<line>GLU CA 281</line>
<line>SER CA 275</line>
<line>PHE CA 382</line>
<line>VAL CA 372</line>
<line>ASP CA 315</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AW2</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1AW2H</entryIDChain>
<sequence>GAALDAKSFAA</sequence>
<secondary-structure>GGGG HHHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 11084 CA GLY H 236 8.451 122.267 55.715 1.00 17.38 C </line>
<line>ATOM 11088 CA ALA H 237 9.051 125.290 57.989 1.00 25.25 C </line>
<line>ATOM 11093 CA ALA H 238 10.902 122.968 60.429 1.00 20.08 C </line>
<line>ATOM 11098 CA LEU H 239 13.781 122.765 57.988 1.00 17.92 C </line>
<line>ATOM 11106 CA ASP H 240 14.574 126.439 58.276 1.00 23.29 C </line>
<line>ATOM 11114 CA ALA H 241 15.895 127.772 61.569 1.00 21.31 C </line>
<line>ATOM 11119 CA LYS H 242 14.401 131.277 61.001 1.00 26.14 C </line>
<line>ATOM 11128 CA SER H 243 10.944 130.195 59.949 1.00 19.58 C </line>
<line>ATOM 11134 CA PHE H 244 10.714 127.512 62.547 1.00 19.95 C </line>
<line>ATOM 11145 CA ALA H 245 11.914 129.692 65.442 1.00 22.35 C </line>
<line>ATOM 11150 CA ALA H 246 9.362 132.267 64.235 1.00 21.36 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ALA PHE SER LYS ALA ASP LEU ALA ALA GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 13.17 12.72 8.91 9.33 12.02 10.95 7.84 5.82 5.36 3.83 </line>
<line>ALA CA 9.37 9.12 5.34 5.61 8.58 8.11 5.65 5.36 3.84 </line>
<line>ALA CA 10.17 8.45 5.02 7.24 9.03 7.02 5.49 3.78 </line>
<line>LEU CA 12.20 10.35 7.26 8.19 9.05 6.51 3.77 </line>
<line>ASP CA 9.83 8.31 5.86 5.48 5.56 3.79 </line>
<line>ALA CA 8.37 5.88 5.28 5.75 3.85 </line>
<line>LYS CA 6.07 5.33 5.49 3.77 </line>
<line>SER CA 5.02 5.60 3.74 </line>
<line>PHE CA 5.22 3.82 </line>
<line>ALA CA 3.82 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>GLY CA 309</line>
<line>ALA CA 340</line>
<line>ALA CA 420</line>
<line>LEU CA 355</line>
<line>ASP CA 315</line>
<line>ALA CA 323</line>
<line>LYS CA 264</line>
<line>SER CA 296</line>
<line>PHE CA 400</line>
<line>ALA CA 387</line>
<line>ALA CA 339</line>
</n14>
</entryChain>
<parallel>
<x>19.284000396728516</x>
<y>-123.4520034790039</y>
<z>-53.41299819946289</z>
</parallel>
<rotation>
<x>0.7480000257492065</x>
<y>0.640999972820282</y>
<z>0.17000000178813934</z>
<x>-0.008999999612569809</x>
<y>0.2669999897480011</y>
<z>-0.9639999866485596</z>
<x>-0.6639999747276306</x>
<y>0.718999981880188</y>
<z>0.20600000023841858</z>
</rotation>
<rmsd>0.9945530295372009</rmsd>
<dmax>1.7388709783554077</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1AW2</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1AW2H</entryIDChain>
<sequence>HIAEK-SEAVA</sequence>
<secondary-structure>HHH - HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 10786 CA HIS H 195 -15.364 114.299 71.942 1.00 31.42 C </line>
<line>ATOM 10796 CA ILE H 196 -12.861 113.781 74.698 1.00 29.54 C </line>
<line>ATOM 10804 CA ALA H 197 -14.821 116.060 77.054 1.00 34.10 C </line>
<line>ATOM 10809 CA GLU H 198 -17.670 113.590 76.706 1.00 39.89 C </line>
<line>ATOM 10818 CA LYS H 199 -15.806 110.862 78.568 1.00 41.79 C </line>
<line>ATOM 10827 CA SER H 200 -13.732 113.247 80.723 1.00 41.89 C </line>
<line>ATOM 10833 CA GLU H 201 -13.598 117.061 80.866 1.00 46.15 C </line>
<line>ATOM 10842 CA ALA H 202 -10.463 117.148 83.003 1.00 40.14 C </line>
<line>ATOM 10847 CA VAL H 203 -8.570 115.185 80.375 1.00 32.52 C </line>
<line>ATOM 10854 CA ALA H 204 -10.089 117.215 77.563 1.00 31.16 C </line>
</atom-coordinate>
<distance-map>
<line> ALA VAL ALA GLU SER LYS GLU ALA ILE HIS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>HIS CA 8.24 10.87 12.43 9.51 8.99 7.48 5.34 5.43 3.76 </line>
<line>ILE CA 5.26 7.25 9.28 7.02 6.11 5.67 5.21 3.82 </line>
<line>ALA CA 4.90 7.13 7.45 4.13 4.75 5.50 3.79 </line>
<line>GLU CA 8.45 9.94 10.21 6.78 5.64 3.79 </line>
<line>LYS CA 8.61 8.62 9.37 6.97 3.83 </line>
<line>SER CA 6.25 5.52 5.58 3.82 </line>
<line>GLU CA 4.82 5.39 3.80 </line>
<line>ALA CA 5.45 3.79 </line>
<line>VAL CA 3.79 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>HIS CA 324</line>
<line>ILE CA 356</line>
<line>ALA CA 252</line>
<line>GLU CA 206</line>
<line>LYS CA 217</line>
<line>SER CA 217</line>
<line>GLU CA 202</line>
<line>ALA CA 193</line>
<line>VAL CA 272</line>
<line>ALA CA 311</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1YDV</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1YDVA</entryIDChain>
<sequence>IVKDTCGEKQA</sequence>
<secondary-structure>HHHH HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1520 CA ILE A 191 4.525 -9.711 21.562 1.00 14.96 C </line>
<line>ATOM 1528 CA VAL A 192 4.843 -6.033 22.550 1.00 12.60 C </line>
<line>ATOM 1535 CA LYS A 193 1.177 -5.494 21.631 1.00 17.80 C </line>
<line>ATOM 1544 CA ASP A 194 -0.043 -8.464 23.658 1.00 21.00 C </line>
<line>ATOM 1552 CA THR A 195 2.095 -7.564 26.674 1.00 22.73 C </line>
<line>ATOM 1559 CA CYS A 196 1.913 -3.757 26.652 1.00 18.96 C </line>
<line>ATOM 1565 CA GLY A 197 -0.755 -2.487 24.283 1.00 18.61 C </line>
<line>ATOM 1569 CA GLU A 198 -1.551 -1.645 20.660 1.00 22.02 C </line>
<line>ATOM 1578 CA LYS A 199 -0.586 2.016 20.845 1.00 19.06 C </line>
<line>ATOM 1587 CA GLN A 200 2.700 1.022 22.466 1.00 13.81 C </line>
<line>ATOM 1596 CA ALA A 201 3.421 -1.590 19.795 1.00 13.67 C </line>
</atom-coordinate>
<distance-map>
<line> ALA GLN LYS GLU GLY CYS THR ASP LYS VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 8.38 10.92 12.81 10.14 9.35 8.26 6.05 5.18 5.38 3.82 </line>
<line>VAL CA 5.42 7.37 9.86 7.98 6.85 5.53 5.19 5.57 3.82 </line>
<line>LYS CA 4.86 6.74 7.75 4.82 4.45 5.36 5.53 3.80 </line>
<line>ASP CA 8.61 9.95 10.86 7.60 6.05 5.91 3.80 </line>
<line>THR CA 9.21 9.58 11.53 9.19 6.29 3.81 </line>
<line>CYS CA 7.35 6.40 8.56 7.24 3.79 </line>
<line>GLY CA 6.20 5.25 5.67 3.80 </line>
<line>GLU CA 5.05 5.33 3.79 </line>
<line>LYS CA 5.49 3.80 </line>
<line>GLN CA 3.80 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ILE CA 333</line>
<line>VAL CA 367</line>
<line>LYS CA 262</line>
<line>ASP CA 212</line>
<line>THR CA 241</line>
<line>CYS CA 249</line>
<line>GLY CA 201</line>
<line>GLU CA 195</line>
<line>LYS CA 194</line>
<line>GLN CA 270</line>
<line>ALA CA 332</line>
</n14>
</entryChain>
<parallel>
<x>-15.503000259399414</x>
<y>119.42900085449219</y>
<z>55.21200180053711</z>
</parallel>
<rotation>
<x>0.6499999761581421</x>
<y>-0.29100000858306885</y>
<z>-0.7020000219345093</z>
<x>0.7519999742507935</x>
<y>0.1120000034570694</y>
<z>0.6489999890327454</z>
<x>-0.10999999940395355</x>
<y>-0.949999988079071</y>
<z>0.2919999957084656</z>
</rotation>
<rmsd>0.8971179723739624</rmsd>
<dmax>1.949828028678894</dmax>
</indel>