NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1YDVA-1AW2J
confEVID 1YDVA-1AW2J
pdbIDA 1YDV
pdbIDB 1AW2
pdbChainA A
pdbChainB J
identity 0.380400002002716
indelSize 2
alignment <alignment>
<seq1>RKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRKLL---QSKFSTGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAF-----VDLIDNFDNVILVYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLK-ESFVDIIKSAM----</seq1>
<seq2>RHPVVMGNWKLNGSKEMVVDLLNGLNAELEGVTGVDVAVAPPALFVDLAERTLTEAGSAIILGAQNTDLNNSGAFTGDMSPAMLKEFGATHIIIGHSERREYHAESDEFVAKKFAFLKENGLTPVLCIGESDAQNEAGETMAVCARQLDAVINTQGVEAL---EGAIIAYEPIWAIGTGKAATAEDAQRIHAQIRAHIAEK-SEAVAKNVVIQYGGSVKPENAAAYFAQPDIDGALVGGAALDAKSFAAIAKAAAEAKA</seq2>
<ss_1> EEEE HHHHHHHHHHGGG EEEEE GGGHHHHHHH --- EEEE HHHHHH EEEE HHHH HHHHHHHHHHHH EEEEEE HHHHH HHHHHHHHHH -----GGG EEE HHHHHHHHHHHHHHHHH HHHHHH EE HHHHH EEEE GGGG -GGGHHHHH ----</ss_1>
<ss_2> EEEE HHHHHHHHHHHHHH EEEE HHHHHHHHHH EEEE HHHH EEEE HHHHH HHHHHHHHHHHHH EEEEEE HHHHH HHHHHHHHHHHHHHHH GGGG--- EEEE HHHHHHHHHHHHHHHH - HHHHHH EEEE HHHHH EEEE GGGG HHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1YDV</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1YDVA</entryIDChain>
<sequence>NASLK-ESFVD</sequence>
<secondary-structure>GGGG -GGGHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1837 CA ASN A 233 31.411 -2.767 8.991 1.00 14.63 C </line>
<line>ATOM 1845 CA ALA A 234 29.759 -0.668 6.283 1.00 9.32 C </line>
<line>ATOM 1850 CA SER A 235 29.561 2.303 8.682 1.00 3.00 C </line>
<line>ATOM 1856 CA LEU A 236 33.374 2.553 8.641 1.00 11.93 C </line>
<line>ATOM 1864 CA LYS A 237 33.218 3.391 4.939 1.00 14.72 C </line>
<line>ATOM 1873 CA GLU A 238 32.410 6.691 3.227 1.00 19.30 C </line>
<line>ATOM 1882 CA SER A 239 29.671 4.876 1.285 1.00 11.68 C </line>
<line>ATOM 1888 CA PHE A 240 27.684 4.720 4.544 1.00 6.64 C </line>
<line>ATOM 1899 CA VAL A 241 25.961 7.893 3.271 1.00 9.94 C </line>
<line>ATOM 1906 CA ASP A 242 24.141 5.792 0.677 1.00 10.65 C </line>
</atom-coordinate>
<distance-map>
<line> ASP VAL PHE SER GLU LYS LEU SER ALA ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 13.97 13.27 9.47 10.99 11.12 7.59 5.68 5.41 3.80 </line>
<line>ALA CA 10.23 9.84 6.03 7.46 8.40 5.50 5.39 3.82 </line>
<line>SER CA 10.28 8.57 5.15 7.83 7.56 5.34 3.82 </line>
<line>LEU CA 12.62 10.60 7.34 8.56 6.88 3.80 </line>
<line>LYS CA 10.31 8.70 5.71 5.30 3.80 </line>
<line>GLU CA 8.70 6.56 5.29 3.82 </line>
<line>SER CA 5.64 5.18 3.82 </line>
<line>PHE CA 5.35 3.83 </line>
<line>VAL CA 3.80 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>ASN CA 306</line>
<line>ALA CA 326</line>
<line>SER CA 409</line>
<line>LEU CA 349</line>
<line>LYS CA 300</line>
<line>GLU CA 281</line>
<line>SER CA 275</line>
<line>PHE CA 382</line>
<line>VAL CA 372</line>
<line>ASP CA 315</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AW2</pdbID>
<pdbChain>J</pdbChain>
<entryIDChain>1AW2J</entryIDChain>
<sequence>GAALDAKSFAA</sequence>
<secondary-structure>GGGG HHHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 12950 CA GLY J 236 21.129 51.030 23.343 1.00 4.09 C </line>
<line>ATOM 12954 CA ALA J 237 21.433 50.057 27.014 1.00 8.96 C </line>
<line>ATOM 12959 CA ALA J 238 22.875 53.573 27.548 1.00 11.00 C </line>
<line>ATOM 12964 CA LEU J 239 19.409 55.080 26.982 1.00 9.93 C </line>
<line>ATOM 12972 CA ASP J 240 17.989 53.719 30.227 1.00 11.49 C </line>
<line>ATOM 12980 CA ALA J 241 19.331 54.668 33.669 1.00 11.44 C </line>
<line>ATOM 12985 CA LYS J 242 18.473 51.288 35.235 1.00 10.82 C </line>
<line>ATOM 12994 CA SER J 243 20.114 49.258 32.460 1.00 4.03 C </line>
<line>ATOM 13000 CA PHE J 244 23.191 51.453 32.092 1.00 4.87 C </line>
<line>ATOM 13011 CA ALA J 245 23.786 51.576 35.909 1.00 5.13 C </line>
<line>ATOM 13016 CA ALA J 246 23.518 47.769 36.054 1.00 2.15 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ALA PHE SER LYS ALA ASP LEU ALA ALA GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 13.34 12.86 9.00 9.34 12.19 11.09 8.03 5.71 5.22 3.81 </line>
<line>ALA CA 9.56 9.33 5.55 5.66 8.82 8.36 5.97 5.42 3.84 </line>
<line>ALA CA 10.32 8.64 5.02 7.10 9.15 7.16 5.57 3.82 </line>
<line>LEU CA 12.35 10.54 7.32 8.03 9.13 6.70 3.79 </line>
<line>ASP CA 10.00 8.40 5.97 5.42 5.59 3.81 </line>
<line>ALA CA 8.42 5.87 5.27 5.60 3.82 </line>
<line>LYS CA 6.21 5.36 5.67 3.81 </line>
<line>SER CA 5.17 5.55 3.80 </line>
<line>PHE CA 5.42 3.87 </line>
<line>ALA CA 3.82 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>GLY CA 302</line>
<line>ALA CA 335</line>
<line>ALA CA 414</line>
<line>LEU CA 347</line>
<line>ASP CA 312</line>
<line>ALA CA 318</line>
<line>LYS CA 259</line>
<line>SER CA 293</line>
<line>PHE CA 392</line>
<line>ALA CA 376</line>
<line>ALA CA 332</line>
</n14>
</entryChain>
<parallel>
<x>10.309000015258789</x>
<y>-49.29499816894531</y>
<z>-23.538999557495117</z>
</parallel>
<rotation>
<x>-0.9259999990463257</x>
<y>0.07199999690055847</y>
<z>0.3700000047683716</z>
<x>0.35100001096725464</x>
<y>0.5239999890327454</y>
<z>0.7770000100135803</z>
<x>-0.1379999965429306</x>
<y>0.8489999771118164</y>
<z>-0.5099999904632568</z>
</rotation>
<rmsd>1.02041494846344</rmsd>
<dmax>1.8388550281524658</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1AW2</pdbID>
<pdbChain>J</pdbChain>
<entryIDChain>1AW2J</entryIDChain>
<sequence>HIAEK-SEAVA</sequence>
<secondary-structure>HHH - HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 12652 CA HIS J 195 50.236 44.128 19.355 1.00 12.63 C </line>
<line>ATOM 12662 CA ILE J 196 50.623 47.244 21.428 1.00 12.21 C </line>
<line>ATOM 12670 CA ALA J 197 52.939 45.333 23.775 1.00 10.21 C </line>
<line>ATOM 12675 CA GLU J 198 55.221 44.399 20.934 1.00 16.07 C </line>
<line>ATOM 12684 CA LYS J 199 56.047 48.134 20.909 1.00 13.23 C </line>
<line>ATOM 12693 CA SER J 200 55.696 48.890 24.602 1.00 13.83 C </line>
<line>ATOM 12699 CA GLU J 201 54.774 46.739 27.561 1.00 15.20 C </line>
<line>ATOM 12708 CA ALA J 202 54.249 49.675 29.824 1.00 11.70 C </line>
<line>ATOM 12713 CA VAL J 203 51.720 51.231 27.446 1.00 15.01 C </line>
<line>ATOM 12720 CA ALA J 204 49.984 47.895 26.764 1.00 5.72 C </line>
</atom-coordinate>
<distance-map>
<line> ALA VAL ALA GLU SER LYS GLU ALA ILE HIS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>HIS CA 8.32 10.87 12.51 9.73 8.95 7.23 5.24 5.32 3.76 </line>
<line>ILE CA 5.41 7.30 9.46 7.42 6.21 5.52 5.43 3.81 </line>
<line>ALA CA 4.92 7.05 7.56 4.44 4.58 5.07 3.76 </line>
<line>GLU CA 8.58 10.07 10.38 7.04 5.82 3.83 </line>
<line>LYS CA 8.43 8.43 9.22 6.91 3.79 </line>
<line>SER CA 6.19 5.42 5.48 3.77 </line>
<line>GLU CA 4.99 5.43 3.74 </line>
<line>ALA CA 5.54 3.80 </line>
<line>VAL CA 3.82 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>HIS CA 325</line>
<line>ILE CA 363</line>
<line>ALA CA 260</line>
<line>GLU CA 205</line>
<line>LYS CA 224</line>
<line>SER CA 217</line>
<line>GLU CA 199</line>
<line>ALA CA 189</line>
<line>VAL CA 271</line>
<line>ALA CA 312</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1YDV</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1YDVA</entryIDChain>
<sequence>IVKDTCGEKQA</sequence>
<secondary-structure>HHHH HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1520 CA ILE A 191 4.525 -9.711 21.562 1.00 14.96 C </line>
<line>ATOM 1528 CA VAL A 192 4.843 -6.033 22.550 1.00 12.60 C </line>
<line>ATOM 1535 CA LYS A 193 1.177 -5.494 21.631 1.00 17.80 C </line>
<line>ATOM 1544 CA ASP A 194 -0.043 -8.464 23.658 1.00 21.00 C </line>
<line>ATOM 1552 CA THR A 195 2.095 -7.564 26.674 1.00 22.73 C </line>
<line>ATOM 1559 CA CYS A 196 1.913 -3.757 26.652 1.00 18.96 C </line>
<line>ATOM 1565 CA GLY A 197 -0.755 -2.487 24.283 1.00 18.61 C </line>
<line>ATOM 1569 CA GLU A 198 -1.551 -1.645 20.660 1.00 22.02 C </line>
<line>ATOM 1578 CA LYS A 199 -0.586 2.016 20.845 1.00 19.06 C </line>
<line>ATOM 1587 CA GLN A 200 2.700 1.022 22.466 1.00 13.81 C </line>
<line>ATOM 1596 CA ALA A 201 3.421 -1.590 19.795 1.00 13.67 C </line>
</atom-coordinate>
<distance-map>
<line> ALA GLN LYS GLU GLY CYS THR ASP LYS VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 8.38 10.92 12.81 10.14 9.35 8.26 6.05 5.18 5.38 3.82 </line>
<line>VAL CA 5.42 7.37 9.86 7.98 6.85 5.53 5.19 5.57 3.82 </line>
<line>LYS CA 4.86 6.74 7.75 4.82 4.45 5.36 5.53 3.80 </line>
<line>ASP CA 8.61 9.95 10.86 7.60 6.05 5.91 3.80 </line>
<line>THR CA 9.21 9.58 11.53 9.19 6.29 3.81 </line>
<line>CYS CA 7.35 6.40 8.56 7.24 3.79 </line>
<line>GLY CA 6.20 5.25 5.67 3.80 </line>
<line>GLU CA 5.05 5.33 3.79 </line>
<line>LYS CA 5.49 3.80 </line>
<line>GLN CA 3.80 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ILE CA 333</line>
<line>VAL CA 367</line>
<line>LYS CA 262</line>
<line>ASP CA 212</line>
<line>THR CA 241</line>
<line>CYS CA 249</line>
<line>GLY CA 201</line>
<line>GLU CA 195</line>
<line>LYS CA 194</line>
<line>GLN CA 270</line>
<line>ALA CA 332</line>
</n14>
</entryChain>
<parallel>
<x>52.5099983215332</x>
<y>51.7400016784668</y>
<z>0.8159999847412109</z>
</parallel>
<rotation>
<x>-0.8180000185966492</x>
<y>0.4020000100135803</y>
<z>-0.41200000047683716</z>
<x>-0.02800000086426735</x>
<y>0.6869999766349792</y>
<z>0.7269999980926514</z>
<x>0.5740000009536743</x>
<y>0.6060000061988831</y>
<z>-0.550000011920929</z>
</rotation>
<rmsd>0.8531590104103088</rmsd>
<dmax>1.982079029083252</dmax>
</indel>