NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1YDVA-1AW2K
confEVID 1YDVA-1AW2K
pdbIDA 1YDV
pdbIDB 1AW2
pdbChainA A
pdbChainB K
identity 0.380400002002716
indelSize 2
alignment <alignment>
<seq1>RKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRKLL---QSKFSTGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAF-----VDLIDNFDNVILVYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLK-ESFVDIIKSAM---</seq1>
<seq2>RHPVVMGNWKLNGSKEMVVDLLNGLNAELEGVTGVDVAVAPPALFVDLAERTLTEAGSAIILGAQNTDLNNSGAFTGDMSPAMLKEFGATHIIIGHSERREYHAESDEFVAKKFAFLKENGLTPVLCIGESDAQNEAGETMAVCARQLDAVINTQGVEAL---EGAIIAYEPIWAIGTGKAATAEDAQRIHAQIRAHIAEK-SEAVAKNVVIQYGGSVKPENAAAYFAQPDIDGALVGGAALDAKSFAAIAKAAAEAK</seq2>
<ss_1> EEEE HHHHHHHHHHGGG EEEEE GGGHHHHHHH --- EEEE HHHHHH EEEE HHHH HHHHHHHHHHHH EEEEEE HHHHH HHHHHHHHHH -----GGG EEE HHHHHHHHHHHHHHHHH HHHHHH EE HHHHH EEEE GGGG -GGGHHHHH ---</ss_1>
<ss_2> EEEE HHHHHHHHHHHHHH EEE HHHHHHHHHH EEEE HHHH EEEE HHHHH HHHHHHHHHHHHH EEEEEE HHHHH HHHHHHHHHHHHH GGGG--- EEEE HHHHHHHHHHHHHHHH - HHHH EEEE HHHHHHH EEEE GGGG HHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1YDV</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1YDVA</entryIDChain>
<sequence>NASLK-ESFVD</sequence>
<secondary-structure>GGGG -GGGHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1837 CA ASN A 233 31.411 -2.767 8.991 1.00 14.63 C </line>
<line>ATOM 1845 CA ALA A 234 29.759 -0.668 6.283 1.00 9.32 C </line>
<line>ATOM 1850 CA SER A 235 29.561 2.303 8.682 1.00 3.00 C </line>
<line>ATOM 1856 CA LEU A 236 33.374 2.553 8.641 1.00 11.93 C </line>
<line>ATOM 1864 CA LYS A 237 33.218 3.391 4.939 1.00 14.72 C </line>
<line>ATOM 1873 CA GLU A 238 32.410 6.691 3.227 1.00 19.30 C </line>
<line>ATOM 1882 CA SER A 239 29.671 4.876 1.285 1.00 11.68 C </line>
<line>ATOM 1888 CA PHE A 240 27.684 4.720 4.544 1.00 6.64 C </line>
<line>ATOM 1899 CA VAL A 241 25.961 7.893 3.271 1.00 9.94 C </line>
<line>ATOM 1906 CA ASP A 242 24.141 5.792 0.677 1.00 10.65 C </line>
</atom-coordinate>
<distance-map>
<line> ASP VAL PHE SER GLU LYS LEU SER ALA ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 13.97 13.27 9.47 10.99 11.12 7.59 5.68 5.41 3.80 </line>
<line>ALA CA 10.23 9.84 6.03 7.46 8.40 5.50 5.39 3.82 </line>
<line>SER CA 10.28 8.57 5.15 7.83 7.56 5.34 3.82 </line>
<line>LEU CA 12.62 10.60 7.34 8.56 6.88 3.80 </line>
<line>LYS CA 10.31 8.70 5.71 5.30 3.80 </line>
<line>GLU CA 8.70 6.56 5.29 3.82 </line>
<line>SER CA 5.64 5.18 3.82 </line>
<line>PHE CA 5.35 3.83 </line>
<line>VAL CA 3.80 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>ASN CA 306</line>
<line>ALA CA 326</line>
<line>SER CA 409</line>
<line>LEU CA 349</line>
<line>LYS CA 300</line>
<line>GLU CA 281</line>
<line>SER CA 275</line>
<line>PHE CA 382</line>
<line>VAL CA 372</line>
<line>ASP CA 315</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AW2</pdbID>
<pdbChain>K</pdbChain>
<entryIDChain>1AW2K</entryIDChain>
<sequence>GAALDAKSFAA</sequence>
<secondary-structure>GGGG HHHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 14822 CA GLY K 236 33.352 87.722 9.101 1.00 17.38 C </line>
<line>ATOM 14826 CA ALA K 237 31.093 90.761 9.678 1.00 25.25 C </line>
<line>ATOM 14831 CA ALA K 238 28.627 88.461 11.521 1.00 20.08 C </line>
<line>ATOM 14836 CA LEU K 239 31.051 88.254 14.415 1.00 17.92 C </line>
<line>ATOM 14844 CA ASP K 240 30.779 91.933 15.196 1.00 23.29 C </line>
<line>ATOM 14852 CA ALA K 241 27.487 93.291 16.494 1.00 21.31 C </line>
<line>ATOM 14857 CA LYS K 242 28.085 96.787 14.992 1.00 26.14 C </line>
<line>ATOM 14866 CA SER K 243 29.151 95.685 11.544 1.00 19.58 C </line>
<line>ATOM 14872 CA PHE K 244 26.538 93.017 11.307 1.00 19.95 C </line>
<line>ATOM 14883 CA ALA K 245 23.649 95.219 12.483 1.00 22.35 C </line>
<line>ATOM 14888 CA ALA K 246 24.887 97.776 9.931 1.00 21.36 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ALA PHE SER LYS ALA ASP LEU ALA ALA GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 13.17 12.72 8.91 9.33 12.03 10.96 7.84 5.82 5.36 3.83 </line>
<line>ALA CA 9.37 9.12 5.34 5.61 8.58 8.12 5.65 5.36 3.84 </line>
<line>ALA CA 10.16 8.45 5.02 7.24 9.04 7.03 5.49 3.78 </line>
<line>LEU CA 12.20 10.35 7.26 8.19 9.05 6.51 3.77 </line>
<line>ASP CA 9.83 8.31 5.86 5.48 5.56 3.79 </line>
<line>ALA CA 8.36 5.88 5.28 5.74 3.85 </line>
<line>LYS CA 6.07 5.33 5.49 3.77 </line>
<line>SER CA 5.02 5.60 3.74 </line>
<line>PHE CA 5.22 3.82 </line>
<line>ALA CA 3.82 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>GLY CA 309</line>
<line>ALA CA 340</line>
<line>ALA CA 420</line>
<line>LEU CA 355</line>
<line>ASP CA 315</line>
<line>ALA CA 322</line>
<line>LYS CA 264</line>
<line>SER CA 296</line>
<line>PHE CA 400</line>
<line>ALA CA 387</line>
<line>ALA CA 339</line>
</n14>
</entryChain>
<parallel>
<x>1.0520000457763672</x>
<y>-88.94000244140625</y>
<z>-6.394999980926514</z>
</parallel>
<rotation>
<x>0.6589999794960022</x>
<y>-0.7210000157356262</y>
<z>-0.21199999749660492</z>
<x>-0.010999999940395355</x>
<y>0.27300000190734863</y>
<z>-0.9620000123977661</z>
<x>0.7519999742507935</x>
<y>0.6359999775886536</y>
<z>0.1720000058412552</z>
</rotation>
<rmsd>0.9945690035820007</rmsd>
<dmax>1.7401189804077148</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1AW2</pdbID>
<pdbChain>K</pdbChain>
<entryIDChain>1AW2K</entryIDChain>
<sequence>HIAEK-SEAVA</sequence>
<secondary-structure>HHH - HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 14524 CA HIS K 195 17.219 79.758 -14.789 1.00 31.42 C </line>
<line>ATOM 14534 CA ILE K 196 14.445 79.267 -12.301 1.00 29.54 C </line>
<line>ATOM 14542 CA ALA K 197 12.114 81.552 -14.283 1.00 34.10 C </line>
<line>ATOM 14547 CA GLU K 198 12.465 79.069 -17.122 1.00 39.89 C </line>
<line>ATOM 14556 CA LYS K 199 10.575 76.360 -15.262 1.00 41.79 C </line>
<line>ATOM 14565 CA SER K 200 8.422 78.766 -13.208 1.00 41.89 C </line>
<line>ATOM 14571 CA GLU K 201 8.301 82.581 -13.086 1.00 46.15 C </line>
<line>ATOM 14580 CA ALA K 202 6.145 82.693 -9.963 1.00 40.14 C </line>
<line>ATOM 14585 CA VAL K 203 8.750 80.722 -8.049 1.00 32.52 C </line>
<line>ATOM 14592 CA ALA K 204 11.584 82.729 -9.557 1.00 31.16 C </line>
</atom-coordinate>
<distance-map>
<line> ALA VAL ALA GLU SER LYS GLU ALA ILE HIS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>HIS CA 8.24 10.87 12.43 9.51 8.99 7.48 5.34 5.43 3.76 </line>
<line>ILE CA 5.26 7.25 9.28 7.02 6.11 5.67 5.22 3.82 </line>
<line>ALA CA 4.90 7.13 7.46 4.13 4.75 5.50 3.79 </line>
<line>GLU CA 8.45 9.94 10.21 6.78 5.64 3.79 </line>
<line>LYS CA 8.61 8.62 9.37 6.97 3.83 </line>
<line>SER CA 6.25 5.53 5.58 3.82 </line>
<line>GLU CA 4.82 5.39 3.80 </line>
<line>ALA CA 5.45 3.79 </line>
<line>VAL CA 3.79 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>HIS CA 324</line>
<line>ILE CA 355</line>
<line>ALA CA 252</line>
<line>GLU CA 206</line>
<line>LYS CA 217</line>
<line>SER CA 217</line>
<line>GLU CA 202</line>
<line>ALA CA 193</line>
<line>VAL CA 272</line>
<line>ALA CA 311</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1YDV</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1YDVA</entryIDChain>
<sequence>IVKDTCGEKQA</sequence>
<secondary-structure>HHHH HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1520 CA ILE A 191 4.525 -9.711 21.562 1.00 14.96 C </line>
<line>ATOM 1528 CA VAL A 192 4.843 -6.033 22.550 1.00 12.60 C </line>
<line>ATOM 1535 CA LYS A 193 1.177 -5.494 21.631 1.00 17.80 C </line>
<line>ATOM 1544 CA ASP A 194 -0.043 -8.464 23.658 1.00 21.00 C </line>
<line>ATOM 1552 CA THR A 195 2.095 -7.564 26.674 1.00 22.73 C </line>
<line>ATOM 1559 CA CYS A 196 1.913 -3.757 26.652 1.00 18.96 C </line>
<line>ATOM 1565 CA GLY A 197 -0.755 -2.487 24.283 1.00 18.61 C </line>
<line>ATOM 1569 CA GLU A 198 -1.551 -1.645 20.660 1.00 22.02 C </line>
<line>ATOM 1578 CA LYS A 199 -0.586 2.016 20.845 1.00 19.06 C </line>
<line>ATOM 1587 CA GLN A 200 2.700 1.022 22.466 1.00 13.81 C </line>
<line>ATOM 1596 CA ALA A 201 3.421 -1.590 19.795 1.00 13.67 C </line>
</atom-coordinate>
<distance-map>
<line> ALA GLN LYS GLU GLY CYS THR ASP LYS VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 8.38 10.92 12.81 10.14 9.35 8.26 6.05 5.18 5.38 3.82 </line>
<line>VAL CA 5.42 7.37 9.86 7.98 6.85 5.53 5.19 5.57 3.82 </line>
<line>LYS CA 4.86 6.74 7.75 4.82 4.45 5.36 5.53 3.80 </line>
<line>ASP CA 8.61 9.95 10.86 7.60 6.05 5.91 3.80 </line>
<line>THR CA 9.21 9.58 11.53 9.19 6.29 3.81 </line>
<line>CYS CA 7.35 6.40 8.56 7.24 3.79 </line>
<line>GLY CA 6.20 5.25 5.67 3.80 </line>
<line>GLU CA 5.05 5.33 3.79 </line>
<line>LYS CA 5.49 3.80 </line>
<line>GLN CA 3.80 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ILE CA 333</line>
<line>VAL CA 367</line>
<line>LYS CA 262</line>
<line>ASP CA 212</line>
<line>THR CA 241</line>
<line>CYS CA 249</line>
<line>GLY CA 201</line>
<line>GLU CA 195</line>
<line>LYS CA 194</line>
<line>GLN CA 270</line>
<line>ALA CA 332</line>
</n14>
</entryChain>
<parallel>
<x>9.998000144958496</x>
<y>84.92900085449219</y>
<z>-36.48500061035156</z>
</parallel>
<rotation>
<x>0.6970000267028809</x>
<y>-0.2930000126361847</y>
<z>0.6549999713897705</z>
<x>-0.652999997138977</x>
<y>0.11900000274181366</y>
<z>0.7480000257492065</z>
<x>-0.296999990940094</x>
<y>-0.9490000009536743</y>
<z>-0.10899999737739563</z>
</rotation>
<rmsd>0.896543025970459</rmsd>
<dmax>1.9488190412521362</dmax>
</indel>