NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1YDVA-2V2HA
confEVID 1YDVA-2V2HA
pdbIDA 1YDV
pdbIDB 2V2H
pdbChainA A
pdbChainB A
identity 0.381500005722046
indelSize 3
alignment <alignment>
<seq1>--RKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRKLLQ-SKFSTGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLID--NFDNVILVYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLKESFVDIIKSAM</seq1>
<seq2>SKPQPIAAANWK-SGSPDSLSELIDLFNSTSIN-HDVQCVVASTFVHLAMTKERLSHPKFVIAAQNAGN--------ADALASLKDFGVNWIVLGHSERRWYYGETNEIVADKVAAAVASGFMVIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKVLTPQQAQEAHALIRSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVGGASLKPEFVDIIKATQ</seq2>
<ss_1>-- EEEE HHHHHHHHHHGGG EEEEE GGGHHHHHHH - EEEE HHHHHH EEEE HHHH HHHHHHHHHHHH EEEEEE HHHHH HHHHHHHHHH GGG -- EEE HHHHHHHHHHHHHHHHH HHHHHH EE HHHHH EEEE GGGG GGGHHHHH </ss_1>
<ss_2> EEEEE - HHHHHHHHHH - EEEEE HHHHHHHHHH EEEE --------HHHHHHHHH EEEE HHHH HHHHHHHHHHHHH EEEEEE HHHHH HHHHHHHHHHHHGGG GGGGGG EEEE HHHHHHHHHHHHHHHHH HHHHHH EEE HHHHH EEEE GGGG HHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1YDV</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1YDVA</entryIDChain>
<sequence>RKLLQ-SKFST</sequence>
<secondary-structure>HHH - EE</secondary-structure>
<atom-coordinate>
<line>ATOM 399 CA ARG A 52 31.147 14.762 18.809 1.00 9.76 C </line>
<line>ATOM 410 CA LYS A 53 33.347 17.753 18.041 1.00 15.49 C </line>
<line>ATOM 419 CA LEU A 54 33.857 16.754 14.381 1.00 11.67 C </line>
<line>ATOM 427 CA LEU A 55 30.320 15.596 13.578 1.00 10.26 C </line>
<line>ATOM 435 CA GLN A 56 27.820 18.364 12.808 1.00 9.68 C </line>
<line>ATOM 444 CA SER A 57 24.763 18.649 15.090 1.00 9.87 C </line>
<line>ATOM 450 CA LYS A 58 22.476 16.827 12.602 1.00 5.93 C </line>
<line>ATOM 459 CA PHE A 59 23.954 13.573 13.900 1.00 9.06 C </line>
<line>ATOM 470 CA SER A 60 23.283 12.115 17.357 1.00 4.85 C </line>
<line>ATOM 476 CA THR A 61 25.989 10.231 19.280 1.00 5.57 C </line>
</atom-coordinate>
<distance-map>
<line> THR SER PHE LYS SER GLN LEU LEU LYS ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 6.88 8.42 8.79 10.86 8.35 7.75 5.36 5.56 3.79 </line>
<line>LYS CA 10.60 11.56 11.08 12.19 9.12 7.64 5.81 3.83 </line>
<line>LEU CA 11.33 11.92 10.41 11.52 9.32 6.44 3.81 </line>
<line>LEU CA 8.95 8.71 6.69 8.00 6.52 3.81 </line>
<line>GLN CA 10.55 8.96 6.25 5.56 3.83 </line>
<line>SER CA 9.48 7.07 5.28 3.84 </line>
<line>LYS CA 10.02 6.74 3.80 </line>
<line>PHE CA 6.65 3.81 </line>
<line>SER CA 3.82 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>ARG CA 348</line>
<line>LYS CA 272</line>
<line>LEU CA 281</line>
<line>LEU CA 340</line>
<line>GLN CA 278</line>
<line>SER CA 265</line>
<line>LYS CA 295</line>
<line>PHE CA 411</line>
<line>SER CA 426</line>
<line>THR CA 464</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2V2H</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2V2HA</entryIDChain>
<sequence>KERLSHPKFVI</sequence>
<secondary-structure>HHH EE</secondary-structure>
<atom-coordinate>
<line>ATOM 372 CA LYS A 52 -23.392 15.652 -17.055 1.00 10.94 C </line>
<line>ATOM 381 CA GLU A 53 -24.646 18.383 -14.745 1.00 11.10 C </line>
<line>ATOM 390 CA ARG A 54 -23.649 17.136 -11.276 1.00 18.93 C </line>
<line>ATOM 401 CA LEU A 55 -20.311 15.404 -11.746 1.00 14.75 C </line>
<line>ATOM 409 CA SER A 56 -17.945 18.323 -11.354 1.00 21.60 C </line>
<line>ATOM 415 CA HIS A 57 -14.650 16.719 -10.424 1.00 13.25 C </line>
<line>ATOM 425 CA PRO A 58 -11.933 17.843 -12.853 1.00 11.07 C </line>
<line>ATOM 432 CA LYS A 59 -10.682 14.249 -13.332 1.00 8.82 C </line>
<line>ATOM 441 CA PHE A 60 -14.061 12.861 -14.447 1.00 7.97 C </line>
<line>ATOM 452 CA VAL A 61 -15.899 12.521 -17.757 1.00 7.40 C </line>
<line>ATOM 459 CA ILE A 62 -19.234 10.855 -18.578 1.00 8.88 C </line>
</atom-coordinate>
<distance-map>
<line> ILE VAL PHE LYS PRO HIS SER LEU ARG GLU LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 6.53 8.15 10.08 13.32 12.40 11.02 8.32 6.14 5.97 3.79 </line>
<line>GLU CA 10.03 10.95 11.94 14.63 12.86 11.02 7.51 6.05 3.82 </line>
<line>ARG CA 10.60 11.11 10.97 13.44 11.84 9.05 5.83 3.79 </line>
<line>LEU CA 8.28 7.99 7.27 9.83 8.80 5.96 3.78 </line>
<line>SER CA 10.47 8.88 7.38 8.56 6.21 3.78 </line>
<line>HIS CA 11.04 8.54 5.60 5.50 3.81 </line>
<line>PRO CA 11.62 8.25 5.65 3.84 </line>
<line>LYS CA 10.59 7.06 3.82 </line>
<line>PHE CA 6.92 3.80 </line>
<line>VAL CA 3.82 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>LYS CA 320</line>
<line>GLU CA 235</line>
<line>ARG CA 268</line>
<line>LEU CA 329</line>
<line>SER CA 250</line>
<line>HIS CA 288</line>
<line>PRO CA 249</line>
<line>LYS CA 322</line>
<line>PHE CA 412</line>
<line>VAL CA 417</line>
<line>ILE CA 455</line>
</n14>
</entryChain>
<parallel>
<x>46.78799819946289</x>
<y>0.30300000309944153</y>
<z>28.25200080871582</z>
</parallel>
<rotation>
<x>-0.9549999833106995</x>
<y>0.18299999833106995</y>
<z>-0.23199999332427979</z>
<x>0.12200000137090683</x>
<y>0.9589999914169312</y>
<z>0.2549999952316284</z>
<x>0.27000001072883606</x>
<y>0.2150000035762787</y>
<z>-0.9390000104904175</z>
</rotation>
<rmsd>1.4429969787597656</rmsd>
<dmax>2.7980220317840576</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1YDV</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1YDVA</entryIDChain>
<sequence>VDLID--NFDNV</sequence>
<secondary-structure>GGG -- </secondary-structure>
<atom-coordinate>
<line>ATOM 1200 CA VAL A 151 9.782 -5.352 28.287 1.00 13.86 C </line>
<line>ATOM 1207 CA ASP A 152 7.919 -4.376 31.480 1.00 10.33 C </line>
<line>ATOM 1215 CA LEU A 153 10.490 -1.632 32.204 1.00 11.65 C </line>
<line>ATOM 1223 CA ILE A 154 9.682 0.378 29.074 1.00 10.94 C </line>
<line>ATOM 1231 CA ASP A 155 7.876 3.550 30.119 1.00 14.78 C </line>
<line>ATOM 1239 CA ASN A 156 8.147 5.785 27.029 1.00 11.18 C </line>
<line>ATOM 1247 CA PHE A 157 8.038 3.792 23.783 1.00 6.98 C </line>
<line>ATOM 1258 CA ASP A 158 9.910 6.484 21.842 1.00 14.65 C </line>
<line>ATOM 1266 CA ASN A 159 12.952 6.138 24.133 1.00 11.25 C </line>
<line>ATOM 1274 CA VAL A 160 13.690 2.426 23.692 1.00 7.27 C </line>
</atom-coordinate>
<distance-map>
<line> VAL ASN ASP PHE ASN ASP ILE LEU ASP VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 9.84 12.62 13.48 10.34 11.33 9.29 5.78 5.45 3.82 </line>
<line>ASP CA 11.84 13.78 14.66 11.22 11.10 8.04 5.61 3.83 </line>
<line>LEU CA 9.96 11.47 13.17 10.31 9.34 6.17 3.81 </line>
<line>ILE CA 7.02 8.26 9.47 6.51 5.98 3.80 </line>
<line>ASP CA 8.74 8.26 9.01 6.34 3.82 </line>
<line>ASN CA 7.29 5.62 5.52 3.81 </line>
<line>PHE CA 5.82 5.46 3.81 </line>
<line>ASP CA 5.85 3.82 </line>
<line>ASN CA 3.81 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>VAL CA 398</line>
<line>ASP CA 280</line>
<line>LEU CA 303</line>
<line>ILE CA 358</line>
<line>ASP CA 275</line>
<line>ASN CA 272</line>
<line>PHE CA 351</line>
<line>ASP CA 333</line>
<line>ASN CA 378</line>
<line>VAL CA 480</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2V2H</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2V2HA</entryIDChain>
<sequence>AKKLKKADWAKV</sequence>
<secondary-structure>GGG GGGGGG </secondary-structure>
<atom-coordinate>
<line>ATOM 1072 CA ALA A 151 -7.654 -2.296 -36.042 1.00 8.27 C </line>
<line>ATOM 1077 CA LYS A 152 -8.771 -2.944 -39.639 1.00 8.85 C </line>
<line>ATOM 1086 CA LYS A 153 -11.287 -0.142 -39.308 1.00 10.18 C </line>
<line>ATOM 1095 CA LEU A 154 -8.922 2.373 -37.687 1.00 9.91 C </line>
<line>ATOM 1103 CA LYS A 155 -6.305 4.652 -39.200 1.00 12.44 C </line>
<line>ATOM 1112 CA LYS A 156 -3.096 5.091 -37.168 1.00 12.01 C </line>
<line>ATOM 1121 CA ALA A 157 -4.155 8.547 -35.865 1.00 12.40 C </line>
<line>ATOM 1126 CA ASP A 158 -7.387 7.072 -34.505 1.00 8.74 C </line>
<line>ATOM 1134 CA TRP A 159 -5.593 5.082 -31.769 1.00 7.30 C </line>
<line>ATOM 1148 CA ALA A 160 -5.147 8.299 -29.751 1.00 7.71 C </line>
<line>ATOM 1153 CA LYS A 161 -8.974 8.191 -29.333 1.00 6.71 C </line>
<line>ATOM 1162 CA VAL A 162 -9.235 4.485 -28.432 1.00 6.05 C </line>
</atom-coordinate>
<distance-map>
<line> VAL LYS ALA TRP ASP ALA LYS LYS LEU LYS LYS ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 10.31 12.52 12.57 8.77 9.50 11.39 8.75 7.75 5.11 5.34 3.82 </line>
<line>LYS CA 13.45 15.17 15.40 11.68 11.34 12.95 10.14 8.00 5.67 3.78 </line>
<line>LYS CA 12.00 13.20 14.15 10.80 9.50 11.76 9.95 6.91 3.81 </line>
<line>LEU CA 9.50 10.18 10.60 7.31 5.88 8.01 6.45 3.79 </line>
<line>LYS CA 11.16 10.82 10.19 7.48 5.39 5.56 3.82 </line>
<line>LYS CA 10.69 10.27 8.34 5.95 5.42 3.84 </line>
<line>ALA CA 9.88 8.13 6.20 5.55 3.80 </line>
<line>ASP CA 6.85 5.52 5.40 3.83 </line>
<line>TRP CA 4.98 5.20 3.82 </line>
<line>ALA CA 5.74 3.85 </line>
<line>LYS CA 3.82 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>ALA CA 383</line>
<line>LYS CA 262</line>
<line>LYS CA 279</line>
<line>LEU CA 307</line>
<line>LYS CA 233</line>
<line>LYS CA 233</line>
<line>ALA CA 216</line>
<line>ASP CA 304</line>
<line>TRP CA 372</line>
<line>ALA CA 322</line>
<line>LYS CA 367</line>
<line>VAL CA 474</line>
</n14>
</entryChain>
<parallel>
<x>16.61400032043457</x>
<y>-1.6829999685287476</y>
<z>63.96500015258789</z>
</parallel>
<rotation>
<x>-0.9200000166893005</x>
<y>0.028999999165534973</y>
<z>-0.39100000262260437</z>
<x>0.01899999938905239</x>
<y>0.9990000128746033</y>
<z>0.02800000086426735</z>
<x>0.3919999897480011</x>
<y>0.017999999225139618</y>
<z>-0.9200000166893005</z>
</rotation>
<rmsd>1.1434329748153687</rmsd>
<dmax>1.6890230178833008</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2V2H</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2V2HA</entryIDChain>
<sequence>STSIN-HDVQC</sequence>
<secondary-structure> - E</secondary-structure>
<atom-coordinate>
<line>ATOM 205 CA SER A 30 -15.486 15.546 -2.912 1.00 15.99 C </line>
<line>ATOM 211 CA THR A 31 -12.663 12.999 -3.344 1.00 13.44 C </line>
<line>ATOM 218 CA SER A 32 -9.083 14.263 -3.528 1.00 11.84 C </line>
<line>ATOM 224 CA ILE A 33 -7.228 12.680 -6.464 1.00 11.13 C </line>
<line>ATOM 232 CA ASN A 34 -3.585 13.709 -6.499 1.00 20.33 C </line>
<line>ATOM 240 CA HIS A 35 -2.252 11.925 -9.584 1.00 11.61 C </line>
<line>ATOM 250 CA ASP A 36 -2.928 12.002 -13.304 1.00 10.95 C </line>
<line>ATOM 258 CA VAL A 37 -5.818 9.642 -13.997 1.00 7.80 C </line>
<line>ATOM 265 CA GLN A 38 -8.878 9.938 -16.301 1.00 6.75 C </line>
<line>ATOM 274 CA CYS A 39 -11.928 8.806 -14.378 1.00 5.16 C </line>
</atom-coordinate>
<distance-map>
<line> CYS GLN VAL ASP HIS ASN ILE SER THR SER </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 13.77 15.95 15.85 16.68 15.26 12.56 9.44 6.56 3.83 </line>
<line>THR CA 11.83 13.84 13.10 13.96 12.19 9.64 6.27 3.80 </line>
<line>SER CA 12.47 13.49 11.90 11.77 9.42 6.27 3.82 </line>
<line>ILE CA 9.99 10.34 8.24 8.11 5.92 3.79 </line>
<line>ASN CA 12.48 11.76 8.82 7.05 3.80 </line>
<line>HIS CA 11.24 9.64 6.12 3.78 </line>
<line>ASP CA 9.61 6.97 3.79 </line>
<line>VAL CA 6.18 3.84 </line>
<line>GLN CA 3.78 </line>
<line>CYS CA </line>
</distance-map>
<n14>
<line>SER CA 213</line>
<line>THR CA 265</line>
<line>SER CA 222</line>
<line>ILE CA 269</line>
<line>ASN CA 203</line>
<line>HIS CA 231</line>
<line>ASP CA 256</line>
<line>VAL CA 363</line>
<line>GLN CA 419</line>
<line>CYS CA 496</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1YDV</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1YDVA</entryIDChain>
<sequence>NLDFDPSKLDV</sequence>
<secondary-structure>G EE</secondary-structure>
<atom-coordinate>
<line>ATOM 212 CA ASN A 29 28.577 16.289 3.271 1.00 8.63 C </line>
<line>ATOM 220 CA LEU A 30 25.168 14.585 3.457 1.00 14.20 C </line>
<line>ATOM 228 CA ASP A 31 22.128 16.859 3.341 1.00 17.80 C </line>
<line>ATOM 236 CA PHE A 32 19.261 15.635 5.557 1.00 16.42 C </line>
<line>ATOM 247 CA ASP A 33 16.813 16.894 8.196 1.00 14.21 C </line>
<line>ATOM 255 CA PRO A 34 17.376 15.632 11.781 1.00 9.47 C </line>
<line>ATOM 262 CA SER A 35 13.696 16.245 12.681 1.00 15.47 C </line>
<line>ATOM 268 CA LYS A 36 12.514 13.545 10.243 1.00 15.37 C </line>
<line>ATOM 277 CA LEU A 37 15.186 10.913 10.493 1.00 12.76 C </line>
<line>ATOM 285 CA ASP A 38 17.317 9.695 13.419 1.00 9.57 C </line>
<line>ATOM 293 CA VAL A 39 20.982 9.082 12.533 1.00 8.95 C </line>
</atom-coordinate>
<distance-map>
<line> VAL ASP LEU LYS SER PRO ASP PHE ASP LEU ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 13.98 16.53 16.14 17.72 17.61 14.08 12.77 9.61 6.47 3.82 </line>
<line>LEU CA 11.41 13.59 12.75 14.40 14.81 11.45 9.88 6.36 3.80 </line>
<line>ASP CA 12.09 13.27 11.61 12.29 12.60 9.76 7.20 3.82 </line>
<line>PHE CA 9.72 10.04 7.95 8.48 9.06 6.50 3.81 </line>
<line>ASP CA 9.86 8.91 6.61 5.82 5.50 3.84 </line>
<line>PRO CA 7.51 6.16 5.36 5.51 3.84 </line>
<line>SER CA 10.22 7.52 5.95 3.83 </line>
<line>LYS CA 9.84 6.93 3.76 </line>
<line>LEU CA 6.41 3.82 </line>
<line>ASP CA 3.82 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>ASN CA 235</line>
<line>LEU CA 278</line>
<line>ASP CA 228</line>
<line>PHE CA 254</line>
<line>ASP CA 216</line>
<line>PRO CA 259</line>
<line>SER CA 202</line>
<line>LYS CA 222</line>
<line>LEU CA 324</line>
<line>ASP CA 415</line>
<line>VAL CA 495</line>
</n14>
</entryChain>
<parallel>
<x>-26.54800033569336</x>
<y>-2.2750000953674316</y>
<z>-14.609000205993652</z>
</parallel>
<rotation>
<x>-0.8240000009536743</x>
<y>0.5339999794960022</y>
<z>0.18799999356269836</z>
<x>0.5210000276565552</x>
<y>0.5870000123977661</y>
<z>0.6190000176429749</z>
<x>0.2199999988079071</x>
<y>0.609000027179718</y>
<z>-0.7620000243186951</z>
</rotation>
<rmsd>1.7551900148391724</rmsd>
<dmax>3.368104934692383</dmax>
</indel>