NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1A96D-1VDMG
confEVID 1A96D-1VDMG
pdbIDA 1A96
pdbIDB 1VDM
pdbChainA D
pdbChainB G
identity 0.240299999713898
indelSize 3
alignment <alignment>
<seq1>-EKYIVTWDMLQIHARKLASRLMPSEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSY-------RELKVLKRAEGDGEG--FIVIDDLVDTGGTAVAIREMYP-----KAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWDMGVVFVPPISGR</seq1>
<seq2>MDKVYLTWWQVDRAIFALAEKLREYK-PDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFYKGIDERGEKPVITIPIHGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKIACLAMKPWTSVVPDYYVFRT--EKWIVFPWEEFPVIEK-----</seq2>
<ss_1>- EE HHHHHHHHHHHH EEEE HHHHHHHHHH EEE EEEEE-------EEEE --EEEE HHHHHHHHH ----- EEE EE GGG EE </ss_1>
<ss_2> EE HHHHHHHHHHHHHHH - EEEEE GGHHHHHHHHHH EEEEEEEE EEE EEEEEEEEE HHHHHHHHHHH EEEEE EE -- EEE -----</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1A96</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1A96D</entryIDChain>
<sequence>REMYP-----KAHFV</sequence>
<secondary-structure>HHH ----- EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 4082 CA ARG D 101 13.650 126.870 71.485 1.00 48.18 C </line>
<line>ATOM 4093 CA GLU D 102 12.995 125.439 74.956 1.00 49.29 C </line>
<line>ATOM 4098 CA MET D 103 16.229 123.414 74.933 1.00 50.44 C </line>
<line>ATOM 4106 CA TYR D 104 18.419 126.092 73.335 1.00 49.38 C </line>
<line>ATOM 4118 CA PRO D 105 17.002 129.549 74.311 1.00 48.65 C </line>
<line>ATOM 4125 CA LYS D 106 20.084 131.747 73.809 1.00 45.89 C </line>
<line>ATOM 4134 CA ALA D 107 20.789 129.906 70.555 1.00 40.90 C </line>
<line>ATOM 4139 CA HIS D 108 20.441 131.472 67.103 1.00 35.99 C </line>
<line>ATOM 4149 CA PHE D 109 17.921 129.193 65.356 1.00 31.43 C </line>
<line>ATOM 4160 CA VAL D 110 18.045 129.157 61.538 1.00 25.98 C </line>
</atom-coordinate>
<distance-map>
<line> VAL PHE HIS ALA LYS PRO TYR MET GLU ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 11.11 7.82 9.30 7.81 8.40 5.14 5.17 5.52 3.81 </line>
<line>GLU CA 14.81 11.42 12.39 10.00 9.56 5.78 5.70 3.82 </line>
<line>MET CA 14.69 11.31 12.00 9.06 9.25 6.21 3.81 </line>
<line>TYR CA 12.19 8.57 8.48 5.28 5.91 3.86 </line>
<line>PRO CA 12.82 9.01 8.21 5.35 3.82 </line>
<line>LYS CA 12.71 9.09 6.72 3.80 </line>
<line>ALA CA 9.45 5.98 3.81 </line>
<line>HIS CA 6.49 3.82 </line>
<line>PHE CA 3.82 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>ARG CA 311</line>
<line>GLU CA 225</line>
<line>MET CA 277</line>
<line>TYR CA 305</line>
<line>PRO CA 229</line>
<line>LYS CA 231</line>
<line>ALA CA 333</line>
<line>HIS CA 374</line>
<line>PHE CA 440</line>
<line>VAL CA 486</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1VDM</pdbID>
<pdbChain>G</pdbChain>
<entryIDChain>1VDMG</entryIDChain>
<sequence>IEEVKKLGAKEIKIA</sequence>
<secondary-structure>HHHHH EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 8028 CA ILE G 103 101.370 36.237 62.839 1.00 52.15 C </line>
<line>ATOM 8036 CA GLU G 104 104.808 34.645 62.493 1.00 60.18 C </line>
<line>ATOM 8045 CA GLU G 105 105.549 36.287 59.154 1.00 62.54 C </line>
<line>ATOM 8054 CA VAL G 106 104.499 39.629 60.636 1.00 61.98 C </line>
<line>ATOM 8061 CA LYS G 107 106.863 39.261 63.590 1.00 62.08 C </line>
<line>ATOM 8070 CA LYS G 108 109.761 38.207 61.357 1.00 62.65 C </line>
<line>ATOM 8079 CA LEU G 109 109.370 41.645 59.776 1.00 63.70 C </line>
<line>ATOM 8087 CA GLY G 110 109.579 43.376 63.151 1.00 65.21 C </line>
<line>ATOM 8091 CA ALA G 111 105.937 44.335 63.669 1.00 66.08 C </line>
<line>ATOM 8096 CA LYS G 112 105.605 46.940 66.421 1.00 65.44 C </line>
<line>ATOM 8105 CA GLU G 113 102.060 46.166 67.588 1.00 60.32 C </line>
<line>ATOM 8114 CA ILE G 114 99.731 43.592 66.036 1.00 54.12 C </line>
<line>ATOM 8122 CA LYS G 115 95.941 43.444 66.034 1.00 47.83 C </line>
<line>ATOM 8131 CA ILE G 116 93.633 41.018 64.243 1.00 40.76 C </line>
<line>ATOM 8139 CA ALA G 117 90.320 41.748 62.560 1.00 33.95 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ILE LYS ILE GLU LYS ALA GLY LEU LYS LYS VAL GLU GLU ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 12.35 9.20 9.57 8.19 11.03 12.05 9.33 10.88 10.13 8.75 6.32 5.11 5.57 3.80 </line>
<line>GLU CA 16.14 12.98 12.98 10.88 12.89 12.93 9.83 9.97 8.79 6.21 5.17 5.33 3.79 </line>
<line>GLU CA 16.53 13.79 13.82 11.60 13.45 12.90 9.24 9.08 6.61 5.13 5.50 3.80 </line>
<line>VAL CA 14.46 11.53 10.81 8.22 9.85 9.39 5.78 6.79 5.34 5.50 3.80 </line>
<line>LYS CA 16.76 13.36 11.95 8.70 9.31 8.28 5.16 4.95 5.15 3.81 </line>
<line>LYS CA 19.80 16.62 15.50 12.31 12.71 10.92 7.58 5.47 3.80 </line>
<line>LEU CA 19.25 16.37 14.92 11.66 11.61 9.29 5.85 3.80 </line>
<line>GLY CA 19.34 16.16 13.94 10.26 9.17 6.26 3.80 </line>
<line>ALA CA 15.87 12.76 10.31 6.68 5.81 3.80 </line>
<line>LYS CA 16.60 13.53 10.28 6.77 3.81 </line>
<line>GLU CA 13.51 10.43 6.88 3.80 </line>
<line>ILE CA 10.20 6.86 3.79 </line>
<line>LYS CA 6.82 3.80 </line>
<line>ILE CA 3.79 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ILE CA 369</line>
<line>GLU CA 279</line>
<line>GLU CA 323</line>
<line>VAL CA 358</line>
<line>LYS CA 268</line>
<line>LYS CA 207</line>
<line>LEU CA 249</line>
<line>GLY CA 219</line>
<line>ALA CA 280</line>
<line>LYS CA 229</line>
<line>GLU CA 267</line>
<line>ILE CA 353</line>
<line>LYS CA 384</line>
<line>ILE CA 464</line>
<line>ALA CA 480</line>
</n14>
</entryChain>
<parallel>
<x>-85.1510009765625</x>
<y>88.15399932861328</y>
<z>9.015000343322754</z>
</parallel>
<rotation>
<x>-0.08500000089406967</x>
<y>-0.019999999552965164</y>
<z>0.9959999918937683</z>
<x>0.9509999752044678</x>
<y>0.29600000381469727</y>
<z>0.08699999749660492</z>
<x>-0.296999990940094</x>
<y>0.9549999833106995</y>
<z>-0.006000000052154064</z>
</rotation>
<rmsd>1.921170949935913</rmsd>
<dmax>3.2349939346313477</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1VDM</pdbID>
<pdbChain>G</pdbChain>
<entryIDChain>1VDMG</entryIDChain>
<sequence>LREYK-PDVII</sequence>
<secondary-structure>H - EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 7400 CA LEU G 22 90.081 50.107 64.061 1.00 48.89 C </line>
<line>ATOM 7408 CA ARG G 23 90.056 53.924 63.990 1.00 54.50 C </line>
<line>ATOM 7419 CA GLU G 24 90.888 53.948 67.702 1.00 58.99 C </line>
<line>ATOM 7428 CA TYR G 25 93.843 51.651 66.920 1.00 56.25 C </line>
<line>ATOM 7440 CA LYS G 26 95.228 53.705 64.000 1.00 55.66 C </line>
<line>ATOM 7449 CA PRO G 27 96.803 50.999 61.759 1.00 54.14 C </line>
<line>ATOM 7456 CA ASP G 28 99.888 51.919 59.746 1.00 53.22 C </line>
<line>ATOM 7464 CA VAL G 29 99.490 48.942 57.428 1.00 48.28 C </line>
<line>ATOM 7471 CA ILE G 30 97.025 46.186 56.562 1.00 43.65 C </line>
<line>ATOM 7479 CA ILE G 31 97.831 42.571 55.788 1.00 43.08 C </line>
</atom-coordinate>
<distance-map>
<line> ILE ILE VAL ASP PRO LYS TYR GLU ARG LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 13.61 10.95 11.57 10.87 7.16 6.28 4.97 5.35 3.82 </line>
<line>ARG CA 16.02 12.79 12.53 10.89 7.68 5.18 5.30 3.80 </line>
<line>GLU CA 17.88 14.90 14.30 12.18 8.89 5.71 3.82 </line>
<line>TYR CA 14.91 12.14 11.37 9.39 5.99 3.83 </line>
<line>LYS CA 14.08 10.73 9.17 6.56 3.85 </line>
<line>PRO CA 10.38 7.09 5.50 3.80 </line>
<line>ASP CA 10.36 7.16 3.79 </line>
<line>VAL CA 6.78 3.80 </line>
<line>ILE CA 3.78 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>LEU CA 352</line>
<line>ARG CA 262</line>
<line>GLU CA 206</line>
<line>TYR CA 265</line>
<line>LYS CA 282</line>
<line>PRO CA 362</line>
<line>ASP CA 321</line>
<line>VAL CA 386</line>
<line>ILE CA 468</line>
<line>ILE CA 477</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1A96</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1A96D</entryIDChain>
<sequence>LMPSEQWKGII</sequence>
<secondary-structure> EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 3580 CA LEU D 23 26.047 134.658 59.963 1.00 34.10 C </line>
<line>ATOM 3588 CA MET D 24 29.279 136.589 59.595 1.00 37.62 C </line>
<line>ATOM 3596 CA PRO D 25 31.600 137.202 61.094 1.00 39.18 C </line>
<line>ATOM 3603 CA SER D 26 32.201 133.578 62.216 1.00 39.24 C </line>
<line>ATOM 3609 CA GLU D 27 34.179 134.564 65.425 1.00 40.34 C </line>
<line>ATOM 3618 CA GLN D 28 30.934 135.256 67.294 1.00 36.45 C </line>
<line>ATOM 3627 CA TRP D 29 30.075 131.552 67.102 1.00 31.56 C </line>
<line>ATOM 3641 CA LYS D 30 31.325 128.874 69.498 1.00 29.31 C </line>
<line>ATOM 3646 CA GLY D 31 29.826 126.074 67.418 1.00 26.22 C </line>
<line>ATOM 3650 CA ILE D 32 26.928 124.654 65.402 1.00 22.48 C </line>
<line>ATOM 3658 CA ILE D 33 24.190 122.303 66.596 1.00 22.47 C </line>
</atom-coordinate>
<distance-map>
<line> ILE ILE GLY LYS TRP GLN GLU SER PRO MET LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 14.15 11.42 11.98 12.34 8.77 8.83 9.80 6.64 6.21 3.78 </line>
<line>MET CA 16.70 13.48 13.12 12.72 9.08 7.99 7.88 4.95 2.83 </line>
<line>PRO CA 17.53 14.07 12.92 11.83 8.39 6.53 5.69 3.84 </line>
<line>SER CA 14.51 10.84 9.43 8.71 5.70 5.50 3.90 </line>
<line>GLU CA 15.86 12.28 9.75 7.56 5.36 3.81 </line>
<line>GLN CA 14.62 11.49 9.25 6.76 3.81 </line>
<line>TRP CA 10.97 7.77 5.49 3.80 </line>
<line>LYS CA 10.12 7.34 3.80 </line>
<line>GLY CA 6.83 3.81 </line>
<line>ILE CA 3.80 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>LEU CA 317</line>
<line>MET CA 222</line>
<line>PRO CA 182</line>
<line>SER CA 240</line>
<line>GLU CA 185</line>
<line>GLN CA 200</line>
<line>TRP CA 280</line>
<line>LYS CA 257</line>
<line>GLY CA 324</line>
<line>ILE CA 414</line>
<line>ILE CA 427</line>
</n14>
</entryChain>
<parallel>
<x>63.96799850463867</x>
<y>-80.98699951171875</y>
<z>-0.8379999995231628</z>
</parallel>
<rotation>
<x>0.652999997138977</x>
<y>0.20100000500679016</y>
<z>0.7300000190734863</z>
<x>-0.5260000228881836</x>
<y>0.8140000104904175</y>
<z>0.24699999392032623</z>
<x>0.5450000166893005</x>
<y>0.5450000166893005</y>
<z>-0.6380000114440918</z>
</rotation>
<rmsd>1.7921520471572876</rmsd>
<dmax>2.731980085372925</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1VDM</pdbID>
<pdbChain>G</pdbChain>
<entryIDChain>1VDMG</entryIDChain>
<sequence>YVFRT--EKWIV</sequence>
<secondary-structure> -- EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 8255 CA TYR G 132 85.118 40.435 64.834 1.00 40.41 C </line>
<line>ATOM 8267 CA VAL G 133 81.369 40.542 64.138 1.00 35.93 C </line>
<line>ATOM 8274 CA PHE G 134 79.943 37.059 63.617 1.00 39.41 C </line>
<line>ATOM 8285 CA ARG G 135 80.148 34.000 65.810 1.00 45.16 C </line>
<line>ATOM 8296 CA THR G 136 79.024 30.623 64.561 1.00 44.06 C </line>
<line>ATOM 8303 CA GLU G 137 79.861 26.919 64.460 1.00 45.48 C </line>
<line>ATOM 8312 CA LYS G 138 78.380 26.370 61.000 1.00 42.81 C </line>
<line>ATOM 8321 CA TRP G 139 80.246 26.627 57.721 1.00 39.74 C </line>
<line>ATOM 8335 CA ILE G 140 80.015 30.160 56.330 1.00 35.16 C </line>
<line>ATOM 8343 CA VAL G 141 79.375 30.790 52.645 1.00 31.42 C </line>
</atom-coordinate>
<distance-map>
<line> VAL ILE TRP LYS GLU THR ARG PHE VAL TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 16.57 14.28 16.28 16.06 14.51 11.55 8.19 6.30 3.81 </line>
<line>VAL CA 15.20 13.06 15.36 14.82 13.71 10.20 6.86 3.80 </line>
<line>PHE CA 12.65 10.04 11.99 11.12 10.18 6.57 3.77 </line>
<line>ARG CA 13.57 10.23 10.95 9.19 7.21 3.77 </line>
<line>THR CA 11.92 8.30 8.02 5.58 3.80 </line>
<line>GLU CA 12.44 8.75 6.76 3.80 </line>
<line>LYS CA 9.50 6.23 3.78 </line>
<line>TRP CA 6.62 3.80 </line>
<line>ILE CA 3.79 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>TYR CA 368</line>
<line>VAL CA 336</line>
<line>PHE CA 344</line>
<line>ARG CA 279</line>
<line>THR CA 268</line>
<line>GLU CA 226</line>
<line>LYS CA 230</line>
<line>TRP CA 275</line>
<line>ILE CA 340</line>
<line>VAL CA 304</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1A96</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1A96D</entryIDChain>
<sequence>YVVDIPQDTWIE</sequence>
<secondary-structure> EE</secondary-structure>
<atom-coordinate>
<line>ATOM 4272 CA TYR D 125 15.897 131.635 56.831 1.00 23.62 C </line>
<line>ATOM 4284 CA VAL D 126 16.507 131.944 53.086 1.00 23.38 C </line>
<line>ATOM 4291 CA VAL D 127 13.623 130.670 50.938 1.00 21.16 C </line>
<line>ATOM 4298 CA ASP D 128 9.866 131.174 51.352 1.00 24.73 C </line>
<line>ATOM 4306 CA ILE D 129 7.714 128.130 50.568 1.00 24.70 C </line>
<line>ATOM 4314 CA PRO D 130 3.888 127.933 50.519 1.00 25.60 C </line>
<line>ATOM 4321 CA GLN D 131 2.146 126.068 53.354 1.00 27.29 C </line>
<line>ATOM 4330 CA ASP D 132 0.663 123.413 51.030 1.00 29.44 C </line>
<line>ATOM 4338 CA THR D 133 3.902 122.796 49.136 1.00 26.30 C </line>
<line>ATOM 4345 CA TRP D 134 5.963 119.678 49.788 1.00 25.53 C </line>
<line>ATOM 4359 CA ILE D 135 9.730 120.293 49.787 1.00 22.43 C </line>
<line>ATOM 4367 CA GLU D 136 11.554 117.366 48.166 1.00 21.44 C </line>
</atom-coordinate>
<distance-map>
<line> GLU ILE TRP THR ASP GLN PRO ILE ASP VAL VAL TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 17.25 14.71 17.07 16.77 18.26 15.24 14.06 10.88 8.16 6.39 3.81 </line>
<line>VAL CA 16.16 13.88 16.51 16.07 18.11 15.52 13.49 9.91 6.91 3.82 </line>
<line>VAL CA 13.75 11.14 13.45 12.64 14.85 12.60 10.12 6.44 3.81 </line>
<line>ASP CA 14.27 10.99 12.24 10.52 12.04 9.47 6.85 3.81 </line>
<line>ILE CA 11.68 8.13 8.67 6.71 8.50 6.56 3.83 </line>
<line>PRO CA 13.27 9.65 8.54 5.32 5.58 3.81 </line>
<line>GLN CA 13.83 10.18 8.25 5.62 3.83 </line>
<line>ASP CA 12.78 9.67 6.60 3.80 </line>
<line>THR CA 9.43 6.38 3.79 </line>
<line>TRP CA 6.26 3.82 </line>
<line>ILE CA 3.81 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>TYR CA 388</line>
<line>VAL CA 351</line>
<line>VAL CA 343</line>
<line>ASP CA 295</line>
<line>ILE CA 281</line>
<line>PRO CA 217</line>
<line>GLN CA 208</line>
<line>ASP CA 170</line>
<line>THR CA 209</line>
<line>TRP CA 231</line>
<line>ILE CA 313</line>
<line>GLU CA 283</line>
</n14>
</entryChain>
<parallel>
<x>71.24400329589844</x>
<y>-94.60800170898438</y>
<z>11.675999641418457</z>
</parallel>
<rotation>
<x>0.09700000286102295</x>
<y>0.8799999952316284</y>
<z>-0.4659999907016754</z>
<x>-0.2029999941587448</x>
<y>0.47600001096725464</y>
<z>0.8560000061988831</z>
<x>0.9739999771118164</x>
<y>0.010999999940395355</y>
<z>0.22499999403953552</z>
</rotation>
<rmsd>1.5611310005187988</rmsd>
<dmax>3.6606481075286865</dmax>
</indel>