NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1A9WA-1J3YH
confEVID 1A9WA-1J3YH
pdbIDA 1A9W
pdbIDB 1J3Y
pdbChainA A
pdbChainB H
identity 0.42179998755455
indelSize 2
alignment <alignment>
<seq1>-VLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DLSHG-----SAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR</seq1>
<seq2>VHLTPEEKSAVTALWGKVN--VDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH</seq2>
<ss_1>- HHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHH GGGG - ----- HHHHHHHHHHHHHHHHHHH HHHH HHHHIIIIII HHHHHHHHHHHHHHHH HHHH HHHHHHHHHHHHHHHHHH </ss_1>
<ss_2> HHHHHHHHHHGGG --HHHHHHHHHHHHHHH GGGG GGG HHHH HHHHHHHHHHHHHHHHGGG HHHH HHHHHHHH HHHHHHHHHHHHHHHHHGGG HHHHHHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1A9W</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1A9WA</entryIDChain>
<sequence>DLSHG-----SAQVK</sequence>
<secondary-structure> ----- HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 355 CA ASP A 47 37.770 42.533 67.379 1.00 44.50 C </line>
<line>ATOM 363 CA LEU A 48 34.779 42.741 65.027 1.00 60.20 C </line>
<line>ATOM 371 CA SER A 49 35.384 46.350 63.921 1.00 52.74 C </line>
<line>ATOM 377 CA HIS A 50 35.147 47.482 60.256 1.00 81.31 C </line>
<line>ATOM 382 CA GLY A 51 38.380 46.190 58.698 1.00 47.86 C </line>
<line>ATOM 386 CA SER A 52 39.567 43.817 61.431 1.00 47.88 C </line>
<line>ATOM 392 CA ALA A 53 42.725 41.823 60.800 1.00 41.52 C </line>
<line>ATOM 397 CA GLN A 54 41.226 38.845 62.639 1.00 52.92 C </line>
<line>ATOM 406 CA VAL A 55 38.099 38.791 60.466 1.00 41.66 C </line>
<line>ATOM 413 CA LYS A 56 40.013 39.111 57.177 1.00 40.38 C </line>
</atom-coordinate>
<distance-map>
<line> LYS VAL GLN ALA SER GLY HIS SER LEU ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 10.99 7.87 6.93 8.27 6.34 9.44 9.06 5.68 3.81 </line>
<line>LEU CA 10.11 6.89 7.90 9.05 6.08 8.06 6.74 3.82 </line>
<line>SER CA 10.92 8.74 9.60 9.17 5.49 6.02 3.84 </line>
<line>HIS CA 10.16 9.18 10.83 9.47 5.86 3.81 </line>
<line>GLY CA 7.42 7.61 8.81 6.51 3.81 </line>
<line>SER CA 6.36 5.32 5.38 3.79 </line>
<line>ALA CA 5.28 5.54 3.81 </line>
<line>GLN CA 5.60 3.81 </line>
<line>VAL CA 3.82 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>ASP CA 181</line>
<line>LEU CA 233</line>
<line>SER CA 185</line>
<line>HIS CA 164</line>
<line>GLY CA 169</line>
<line>SER CA 197</line>
<line>ALA CA 176</line>
<line>GLN CA 206</line>
<line>VAL CA 268</line>
<line>LYS CA 247</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1J3Y</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1J3YH</entryIDChain>
<sequence>DLSTPDAVMGNPKVK</sequence>
<secondary-structure> HHHH HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 8018 CA ASP H 47 6.117 62.355 39.177 1.00 12.78 C </line>
<line>ATOM 8026 CA LEU H 48 8.897 61.282 41.545 1.00 10.67 C </line>
<line>ATOM 8034 CA SER H 49 10.139 64.806 42.243 1.00 11.44 C </line>
<line>ATOM 8040 CA THR H 50 9.270 65.341 45.945 1.00 9.67 C </line>
<line>ATOM 8047 CA PRO H 51 8.848 62.978 48.933 1.00 9.13 C </line>
<line>ATOM 8054 CA ASP H 52 5.043 63.212 48.873 1.00 9.41 C </line>
<line>ATOM 8062 CA ALA H 53 4.967 62.769 45.082 1.00 9.44 C </line>
<line>ATOM 8067 CA VAL H 54 6.966 59.545 45.428 1.00 8.48 C </line>
<line>ATOM 8074 CA MET H 55 5.135 58.158 48.494 1.00 9.01 C </line>
<line>ATOM 8082 CA GLY H 56 1.667 58.858 47.021 1.00 10.83 C </line>
<line>ATOM 8086 CA ASN H 57 2.417 57.723 43.463 1.00 10.25 C </line>
<line>ATOM 8094 CA PRO H 58 0.026 54.825 42.716 1.00 10.48 C </line>
<line>ATOM 8101 CA LYS H 59 2.644 53.025 40.631 1.00 9.93 C </line>
<line>ATOM 8110 CA VAL H 60 5.217 53.255 43.432 1.00 10.04 C </line>
<line>ATOM 8117 CA LYS H 61 2.585 51.829 45.804 1.00 10.98 C </line>
</atom-coordinate>
<distance-map>
<line> LYS VAL LYS PRO ASN GLY MET VAL ALA ASP PRO THR SER LEU ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 12.93 10.09 10.06 10.31 7.32 9.67 10.27 6.91 6.03 9.79 10.15 8.04 5.62 3.81 </line>
<line>LEU CA 12.14 9.03 10.40 11.03 7.64 9.39 8.50 4.67 5.49 8.50 7.58 6.00 3.80 </line>
<line>SER CA 15.43 12.61 14.06 14.22 10.55 11.40 10.41 6.92 6.24 8.51 7.05 3.84 </line>
<line>THR CA 15.08 12.99 14.96 14.37 10.54 10.05 8.67 6.26 5.09 5.57 3.83 </line>
<line>PRO CA 13.16 11.75 14.37 13.53 9.94 8.50 6.10 5.25 5.47 3.81 </line>
<line>ASP CA 12.04 11.35 13.32 11.55 8.14 5.81 5.07 5.39 3.82 </line>
<line>ALA CA 11.22 9.66 10.96 9.65 5.88 5.47 5.74 3.81 </line>
<line>VAL CA 8.88 6.83 9.18 8.82 5.28 5.58 3.83 </line>
<line>MET CA 7.33 7.05 9.71 8.40 5.73 3.83 </line>
<line>GLY CA 7.19 7.54 8.71 6.12 3.81 </line>
<line>ASN CA 6.34 5.27 5.49 3.83 </line>
<line>PRO CA 5.01 5.47 3.80 </line>
<line>LYS CA 5.31 3.81 </line>
<line>VAL CA 3.82 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>ASP CA 199</line>
<line>LEU CA 258</line>
<line>SER CA 196</line>
<line>THR CA 173</line>
<line>PRO CA 216</line>
<line>ASP CA 185</line>
<line>ALA CA 214</line>
<line>VAL CA 294</line>
<line>MET CA 294</line>
<line>GLY CA 235</line>
<line>ASN CA 251</line>
<line>PRO CA 228</line>
<line>LYS CA 255</line>
<line>VAL CA 334</line>
<line>LYS CA 292</line>
</n14>
</entryChain>
<parallel>
<x>32.07699966430664</x>
<y>-16.569000244140625</y>
<z>19.437000274658203</z>
</parallel>
<rotation>
<x>-0.9769999980926514</x>
<y>-0.15000000596046448</y>
<z>-0.14900000393390656</z>
<x>-0.19699999690055847</x>
<y>0.9010000228881836</y>
<z>0.3880000114440918</z>
<x>0.07599999755620956</x>
<y>0.40799999237060547</y>
<z>-0.9100000262260437</z>
</rotation>
<rmsd>2.6546130180358887</rmsd>
<dmax>3.7353079319000244</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1J3Y</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1J3YH</entryIDChain>
<sequence>WGKVN--VDEVG</sequence>
<secondary-structure>GGG --HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 7758 CA TRP H 15 5.908 38.828 59.534 1.00 12.00 C </line>
<line>ATOM 7772 CA GLY H 16 2.541 37.456 60.562 1.00 13.18 C </line>
<line>ATOM 7776 CA LYS H 17 1.747 41.007 61.758 1.00 11.97 C </line>
<line>ATOM 7785 CA VAL H 18 3.107 42.820 58.699 1.00 9.63 C </line>
<line>ATOM 7792 CA ASN H 19 0.826 44.773 56.397 1.00 9.49 C </line>
<line>ATOM 7800 CA VAL H 20 2.606 43.973 53.110 1.00 13.06 C </line>
<line>ATOM 7807 CA ASP H 21 0.757 46.731 51.205 1.00 13.63 C </line>
<line>ATOM 7815 CA GLU H 22 1.814 49.480 53.598 1.00 10.41 C </line>
<line>ATOM 7824 CA VAL H 23 5.314 48.186 54.243 1.00 8.81 C </line>
<line>ATOM 7831 CA GLY H 24 5.837 47.550 50.523 1.00 9.18 C </line>
</atom-coordinate>
<distance-map>
<line> GLY VAL GLU ASP VAL ASN VAL LYS GLY TRP </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TRP CA 12.54 10.77 12.86 12.58 8.87 8.43 4.95 5.20 3.78 </line>
<line>GLY CA 14.61 12.76 13.91 13.30 9.90 8.59 5.71 3.83 </line>
<line>LYS CA 13.63 10.99 11.76 12.05 9.18 6.62 3.81 </line>
<line>VAL CA 9.83 7.32 8.49 8.77 5.73 3.78 </line>
<line>ASN CA 8.21 6.04 5.56 5.55 3.82 </line>
<line>VAL CA 5.47 5.13 5.59 3.83 </line>
<line>ASP CA 5.19 5.67 3.79 </line>
<line>GLU CA 5.42 3.79 </line>
<line>VAL CA 3.81 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>TRP CA 341</line>
<line>GLY CA 233</line>
<line>LYS CA 225</line>
<line>VAL CA 306</line>
<line>ASN CA 267</line>
<line>VAL CA 307</line>
<line>ASP CA 280</line>
<line>GLU CA 303</line>
<line>VAL CA 367</line>
<line>GLY CA 390</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1A9W</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1A9WA</entryIDChain>
<sequence>WGKVGAHAGEYG</sequence>
<secondary-structure>HHHHGGGHHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 93 CA TRP A 14 34.669 27.236 42.735 1.00 27.19 C </line>
<line>ATOM 107 CA GLY A 15 37.347 27.297 40.035 1.00 35.31 C </line>
<line>ATOM 111 CA LYS A 16 36.156 30.706 38.807 1.00 73.60 C </line>
<line>ATOM 120 CA VAL A 17 36.365 31.982 42.405 1.00 53.96 C </line>
<line>ATOM 127 CA GLY A 18 40.031 31.036 42.420 1.00 63.02 C </line>
<line>ATOM 131 CA ALA A 19 42.409 33.484 44.093 1.00 65.55 C </line>
<line>ATOM 136 CA HIS A 20 39.717 35.684 45.645 1.00 61.03 C </line>
<line>ATOM 146 CA ALA A 21 38.414 32.816 47.807 1.00 56.24 C </line>
<line>ATOM 151 CA GLY A 22 39.984 34.476 50.845 1.00 44.44 C </line>
<line>ATOM 155 CA GLU A 23 38.622 37.955 50.036 1.00 52.20 C </line>
<line>ATOM 160 CA TYR A 24 35.120 36.498 49.578 1.00 40.61 C </line>
<line>ATOM 172 CA GLY A 25 35.271 34.556 52.834 1.00 27.30 C </line>
</atom-coordinate>
<distance-map>
<line> GLY TYR GLU GLY ALA HIS ALA GLY VAL LYS GLY TRP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>TRP CA 12.49 11.52 13.56 12.10 8.42 10.26 10.04 6.58 5.05 5.45 3.80 </line>
<line>GLY CA 14.86 13.44 14.67 13.24 9.59 10.36 8.96 5.18 5.34 3.81 </line>
<line>LYS CA 14.57 12.27 13.59 13.18 9.52 9.18 8.65 5.31 3.82 </line>
<line>VAL CA 10.80 8.57 9.95 9.52 5.84 5.95 6.45 3.79 </line>
<line>GLY CA 11.98 10.26 10.39 9.10 5.90 5.67 3.80 </line>
<line>ALA CA 11.34 9.61 8.35 7.24 5.50 3.81 </line>
<line>HIS CA 8.53 6.10 5.06 5.35 3.82 </line>
<line>ALA CA 6.18 5.25 5.61 3.80 </line>
<line>GLY CA 5.12 5.42 3.82 </line>
<line>GLU CA 5.53 3.82 </line>
<line>TYR CA 3.79 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>TRP CA 363</line>
<line>GLY CA 239</line>
<line>LYS CA 245</line>
<line>VAL CA 304</line>
<line>GLY CA 218</line>
<line>ALA CA 180</line>
<line>HIS CA 237</line>
<line>ALA CA 302</line>
<line>GLY CA 266</line>
<line>GLU CA 283</line>
<line>TYR CA 340</line>
<line>GLY CA 380</line>
</n14>
</entryChain>
<parallel>
<x>-35.28499984741211</x>
<y>11.444999694824219</y>
<z>12.472000122070312</z>
</parallel>
<rotation>
<x>-0.9380000233650208</x>
<y>-0.12300000339746475</y>
<z>-0.32499998807907104</z>
<x>-0.18700000643730164</x>
<y>0.9670000076293945</y>
<z>0.17100000381469727</z>
<x>0.2939999997615814</x>
<y>0.22100000083446503</y>
<z>-0.9300000071525574</z>
</rotation>
<rmsd>1.551277995109558</rmsd>
<dmax>3.4761650562286377</dmax>
</indel>