NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1AC6B-1TVDB
confEVID 1AC6B-1TVDB
pdbIDA 1AC6
pdbIDB 1TVD
pdbChainA B
pdbChainB B
identity 0.307700008153915
indelSize 3
alignment <alignment>
<seq1>DSVTQTEGQVALSEEDFLTIHCNYSASG-YPALFWYVQYPGEGPQFLFRASRDKEKGSS----RGFEATYNKEATSFHLQKASVQESDSAVYYCALSGGNN--KLTFGAGTKLTIKP</seq1>
<seq2>DKVTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGD-DSRSEGADFTQGRFSVKHILTQKAFHLVISPVRTEDSATYYCAFTLPPPTDKLIFGKGTRVTVEP</seq2>
<ss_1> EEE EEE EEEEEEEE - EEEEEEE EEE EEEEE---- EEEEEE EEEEEE GGG EEEEEEEEE --EEE EEEE </ss_1>
<ss_2> EEE EEEE EEEEEEEE EEEEEEEE EEEEEEEE - EEEEEGGG EEEEEEE EEEE GGG EEEEEEE EEE EEEEEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1AC6</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1AC6B</entryIDChain>
<sequence>EKGSS----RGFEA</sequence>
<secondary-structure>EEEEE---- EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1284 CA GLU B 54 12.906 27.911 -6.265 1.00 31.54 C </line>
<line>ATOM 1293 CA LYS B 55 14.832 25.017 -7.755 1.00 26.05 C </line>
<line>ATOM 1302 CA GLY B 56 18.550 24.479 -7.265 1.00 19.40 C </line>
<line>ATOM 1306 CA SER B 57 20.687 22.324 -9.523 1.00 11.81 C </line>
<line>ATOM 1312 CA SER B 58 24.273 21.181 -10.156 1.00 24.92 C </line>
<line>ATOM 1318 CA ARG B 59 25.789 18.007 -11.572 1.00 25.04 C </line>
<line>ATOM 1329 CA GLY B 60 22.329 16.741 -12.594 1.00 16.00 C </line>
<line>ATOM 1333 CA PHE B 61 20.899 16.993 -9.102 1.00 16.07 C </line>
<line>ATOM 1344 CA GLU B 62 17.944 19.184 -8.187 1.00 20.10 C </line>
<line>ATOM 1353 CA ALA B 63 15.725 20.025 -5.235 1.00 15.26 C </line>
</atom-coordinate>
<distance-map>
<line> ALA GLU PHE GLY ARG SER SER GLY LYS GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 8.44 10.26 13.83 15.93 17.09 13.77 10.12 6.68 3.78 </line>
<line>LYS CA 5.66 6.63 10.15 12.17 13.56 10.47 6.68 3.79 </line>
<line>GLY CA 5.65 5.41 8.06 10.13 10.62 7.21 3.78 </line>
<line>SER CA 6.95 4.38 5.35 6.58 6.99 3.82 </line>
<line>SER CA 9.93 6.92 5.48 5.43 3.79 </line>
<line>ARG CA 12.06 8.62 5.57 3.82 </line>
<line>GLY CA 10.42 6.68 3.78 </line>
<line>PHE CA 7.14 3.79 </line>
<line>GLU CA 3.79 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>GLU CA 258</line>
<line>LYS CA 278</line>
<line>GLY CA 312</line>
<line>SER CA 290</line>
<line>SER CA 262</line>
<line>ARG CA 256</line>
<line>GLY CA 268</line>
<line>PHE CA 356</line>
<line>GLU CA 352</line>
<line>ALA CA 417</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1TVD</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1TVDB</entryIDChain>
<sequence>RSEGADFTQGRFSV</sequence>
<secondary-structure>EEEEEGGG EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1383 CA ARG B 54 -9.783 11.269 27.441 1.00 20.32 C </line>
<line>ATOM 1401 CA SER B 55 -6.356 11.841 28.977 1.00 20.59 C </line>
<line>ATOM 1407 CA GLU B 56 -5.018 11.597 32.506 1.00 21.83 C </line>
<line>ATOM 1416 CA GLY B 57 -1.781 12.822 33.980 1.00 15.03 C </line>
<line>ATOM 1420 CA ALA B 57A 0.181 11.475 36.929 1.00 19.29 C </line>
<line>ATOM 1425 CA ASP B 57B -0.298 13.207 40.277 1.00 26.67 C </line>
<line>ATOM 1433 CA PHE B 57C 2.879 15.272 39.781 1.00 26.22 C </line>
<line>ATOM 1444 CA THR B 57D 1.945 16.687 36.328 1.00 31.49 C </line>
<line>ATOM 1451 CA GLN B 57E -0.800 19.065 37.470 0.00 35.24 C </line>
<line>ATOM 1460 CA GLY B 58 -0.671 22.171 35.302 1.00 26.97 C </line>
<line>ATOM 1464 CA ARG B 59 2.700 21.706 33.621 1.00 18.70 C </line>
<line>ATOM 1475 CA PHE B 60 2.150 18.656 31.395 1.00 13.46 C </line>
<line>ATOM 1486 CA SER B 61 -0.470 18.084 28.725 1.00 15.28 C </line>
<line>ATOM 1492 CA VAL B 62 -0.828 15.843 25.705 1.00 12.60 C </line>
</atom-coordinate>
<distance-map>
<line> VAL SER PHE ARG GLY GLN THR PHE ASP ALA GLY GLU SER ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 10.20 11.61 14.58 17.41 16.24 15.56 15.68 18.13 16.08 13.76 10.45 6.96 3.80 </line>
<line>SER CA 7.57 8.58 11.16 14.17 13.38 12.46 12.10 14.62 12.89 10.30 6.85 3.78 </line>
<line>GLU CA 9.05 8.78 10.12 12.77 11.77 9.91 9.43 11.35 9.23 6.83 3.76 </line>
<line>GLY CA 8.86 7.55 7.49 9.96 9.51 7.22 5.86 7.83 6.48 3.79 </line>
<line>ALA CA 12.09 10.56 9.28 11.04 10.85 7.67 5.54 5.46 3.80 </line>
<line>ASP CA 14.82 12.54 10.70 11.20 10.26 6.52 5.72 3.82 </line>
<line>PHE CA 14.57 11.89 9.07 8.91 8.96 5.77 3.85 </line>
<line>THR CA 11.01 8.10 5.32 5.75 6.16 3.81 </line>
<line>GLN CA 12.20 8.81 6.77 5.83 3.79 </line>
<line>GLY CA 11.50 7.75 5.96 3.80 </line>
<line>ARG CA 10.46 6.87 3.82 </line>
<line>PHE CA 7.01 3.78 </line>
<line>SER CA 3.78 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>ARG CA 211</line>
<line>SER CA 299</line>
<line>GLU CA 274</line>
<line>GLY CA 306</line>
<line>ALA CA 275</line>
<line>ASP CA 186</line>
<line>PHE CA 237</line>
<line>THR CA 284</line>
<line>GLN CA 207</line>
<line>GLY CA 201</line>
<line>ARG CA 274</line>
<line>PHE CA 354</line>
<line>SER CA 351</line>
<line>VAL CA 414</line>
</n14>
</entryChain>
<parallel>
<x>22.222000122070312</x>
<y>6.151000022888184</y>
<z>-41.40299987792969</z>
</parallel>
<rotation>
<x>0.17499999701976776</x>
<y>-0.4779999852180481</y>
<z>-0.8610000014305115</z>
<x>0.5839999914169312</x>
<y>-0.652999997138977</y>
<z>0.4819999933242798</z>
<x>0.7929999828338623</x>
<y>0.5870000123977661</y>
<z>-0.16500000655651093</z>
</rotation>
<rmsd>3.134690999984741</rmsd>
<dmax>5.979349136352539</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1AC6</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1AC6B</entryIDChain>
<sequence>SGGNN--KLTFG</sequence>
<secondary-structure>EE --EEE </secondary-structure>
<atom-coordinate>
<line>ATOM 1579 CA SER B 92 20.709 28.719 7.217 1.00 29.51 C </line>
<line>ATOM 1585 CA GLY B 93 18.422 31.158 8.941 1.00 44.07 C </line>
<line>ATOM 1589 CA GLY B 96 19.606 34.722 9.450 1.00 60.86 C </line>
<line>ATOM 1593 CA ASN B 97 22.933 34.360 7.646 1.00 64.32 C </line>
<line>ATOM 1601 CA ASN B 98 26.033 32.742 9.163 1.00 53.88 C </line>
<line>ATOM 1609 CA LYS B 99 25.142 29.418 10.842 1.00 35.99 C </line>
<line>ATOM 1618 CA LEU B 100 24.263 26.229 8.917 1.00 19.80 C </line>
<line>ATOM 1626 CA THR B 101 22.325 23.397 10.506 1.00 14.34 C </line>
<line>ATOM 1633 CA PHE B 102 22.977 19.922 9.078 1.00 12.78 C </line>
<line>ATOM 1644 CA GLY B 103 20.952 16.771 8.667 1.00 12.42 C </line>
</atom-coordinate>
<distance-map>
<line> GLY PHE THR LEU LYS ASN ASN GLY GLY SER </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 12.04 9.27 6.46 4.66 5.77 6.95 6.08 6.50 3.76 </line>
<line>GLY CA 14.61 12.12 8.83 7.64 7.20 7.78 5.68 3.79 </line>
<line>GLY CA 18.02 15.18 11.69 9.70 7.79 6.73 3.80 </line>
<line>ASN CA 17.73 14.51 11.35 8.34 6.29 3.81 </line>
<line>ASN CA 16.77 13.18 10.14 6.75 3.83 </line>
<line>LYS CA 13.50 9.90 6.66 3.83 </line>
<line>LEU CA 10.02 6.44 3.78 </line>
<line>THR CA 7.01 3.81 </line>
<line>PHE CA 3.77 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>SER CA 295</line>
<line>GLY CA 239</line>
<line>GLY CA 161</line>
<line>ASN CA 158</line>
<line>ASN CA 130</line>
<line>LYS CA 169</line>
<line>LEU CA 275</line>
<line>THR CA 288</line>
<line>PHE CA 327</line>
<line>GLY CA 339</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1TVD</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1TVDB</entryIDChain>
<sequence>TLPPPTDKLIFG</sequence>
<secondary-structure> EEE </secondary-structure>
<atom-coordinate>
<line>ATOM 1727 CA THR B 91 -0.643 -1.478 24.677 1.00 8.85 C </line>
<line>ATOM 1734 CA LEU B 92 -1.910 -4.395 22.636 1.00 6.57 C </line>
<line>ATOM 1742 CA PRO B 98 -5.506 -5.532 23.312 1.00 13.70 C </line>
<line>ATOM 1749 CA PRO B 99 -6.205 -7.989 26.194 1.00 16.60 C </line>
<line>ATOM 1756 CA PRO B 100 -5.519 -10.682 27.305 1.00 17.84 C </line>
<line>ATOM 1763 CA THR B 101 -2.041 -9.756 25.978 1.00 24.62 C </line>
<line>ATOM 1770 CA ASP B 102 -2.098 -6.015 26.728 1.00 21.11 C </line>
<line>ATOM 1778 CA LYS B 103 1.699 -5.873 26.461 1.00 9.57 C </line>
<line>ATOM 1787 CA LEU B 104 3.529 -2.645 25.604 1.00 8.20 C </line>
<line>ATOM 1795 CA ILE B 105 5.016 -1.460 22.302 1.00 5.27 C </line>
<line>ATOM 1803 CA PHE B 106 7.582 1.306 22.958 1.00 7.06 C </line>
<line>ATOM 1814 CA GLY B 107 8.959 4.142 20.882 1.00 5.41 C </line>
</atom-coordinate>
<distance-map>
<line> GLY PHE ILE LEU LYS ASP THR PRO PRO PRO LEU THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 11.76 8.85 6.14 4.43 5.29 5.19 8.50 10.74 8.70 6.48 3.78 </line>
<line>LEU CA 13.93 11.08 7.53 6.44 5.46 4.41 6.32 8.62 6.63 3.83 </line>
<line>PRO CA 17.57 14.77 11.33 9.76 7.87 4.85 6.08 6.52 3.85 </line>
<line>PRO CA 20.13 16.94 13.55 11.12 8.19 4.59 4.53 2.99 </line>
<line>PRO CA 21.69 18.28 14.87 12.22 8.71 5.82 3.84 </line>
<line>THR CA 18.44 14.97 11.50 9.04 5.41 3.82 </line>
<line>ASP CA 16.11 12.71 9.54 6.65 3.81 </line>
<line>LYS CA 13.57 9.92 6.91 3.81 </line>
<line>LEU CA 9.89 6.25 3.81 </line>
<line>ILE CA 7.00 3.83 </line>
<line>PHE CA 3.77 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>THR CA 315</line>
<line>LEU CA 243</line>
<line>PRO CA 194</line>
<line>PRO CA 141</line>
<line>PRO CA 94</line>
<line>THR CA 124</line>
<line>ASP CA 192</line>
<line>LYS CA 199</line>
<line>LEU CA 293</line>
<line>ILE CA 309</line>
<line>PHE CA 333</line>
<line>GLY CA 350</line>
</n14>
</entryChain>
<parallel>
<x>23.621999740600586</x>
<y>35.099998474121094</y>
<z>-15.72599983215332</z>
</parallel>
<rotation>
<x>0.36000001430511475</x>
<y>-0.8370000123977661</y>
<z>0.4129999876022339</z>
<x>-0.5249999761581421</x>
<y>-0.5479999780654907</y>
<z>-0.6520000100135803</z>
<x>0.7710000276565552</x>
<y>0.017999999225139618</y>
<z>-0.6359999775886536</z>
</rotation>
<rmsd>2.077383041381836</rmsd>
<dmax>4.13795804977417</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1TVD</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1TVDB</entryIDChain>
<sequence>VFYGD-DSRSE</sequence>
<secondary-structure>EEEE - EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1327 CA VAL B 47 3.586 10.527 33.089 1.00 6.49 C </line>
<line>ATOM 1334 CA PHE B 48 0.420 10.474 30.977 1.00 7.29 C </line>
<line>ATOM 1345 CA TYR B 49 -2.336 8.178 29.745 1.00 9.48 C </line>
<line>ATOM 1357 CA GLY B 50 -4.948 8.617 27.044 1.00 12.27 C </line>
<line>ATOM 1361 CA ASP B 51 -7.397 7.000 24.656 1.00 15.47 C </line>
<line>ATOM 1369 CA ASP B 52 -9.458 8.632 21.910 1.00 16.08 C </line>
<line>ATOM 1377 CA SER B 53 -11.777 10.430 24.322 1.00 20.28 C </line>
<line>ATOM 1383 CA ARG B 54 -9.783 11.269 27.441 1.00 20.32 C </line>
<line>ATOM 1401 CA SER B 55 -6.356 11.841 28.977 1.00 20.59 C </line>
<line>ATOM 1407 CA GLU B 56 -5.018 11.597 32.506 1.00 21.83 C </line>
</atom-coordinate>
<distance-map>
<line> GLU SER ARG SER ASP ASP GLY TYR PHE VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 8.69 10.84 14.53 17.69 17.28 14.29 10.63 7.20 3.81 </line>
<line>PHE CA 5.76 7.20 10.83 13.89 13.53 10.64 6.91 3.79 </line>
<line>TYR CA 5.15 5.49 8.39 11.12 10.60 7.27 3.78 </line>
<line>GLY CA 6.22 4.01 5.53 7.57 6.83 3.78 </line>
<line>ASP CA 9.40 6.57 5.63 5.57 3.80 </line>
<line>ASP CA 11.87 8.36 6.14 3.80 </line>
<line>SER CA 10.68 7.28 3.80 </line>
<line>ARG CA 6.96 3.80 </line>
<line>SER CA 3.78 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>VAL CA 412</line>
<line>PHE CA 417</line>
<line>TYR CA 393</line>
<line>GLY CA 344</line>
<line>ASP CA 307</line>
<line>ASP CA 255</line>
<line>SER CA 189</line>
<line>ARG CA 211</line>
<line>SER CA 299</line>
<line>GLU CA 274</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AC6</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1AC6B</entryIDChain>
<sequence>LFRASRDKEKG</sequence>
<secondary-structure> EEE EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1215 CA LEU B 46 26.214 21.474 -4.150 1.00 12.88 C </line>
<line>ATOM 1223 CA PHE B 47 23.522 24.173 -4.454 1.00 7.63 C </line>
<line>ATOM 1234 CA ARG B 48 21.172 26.512 -2.565 1.00 13.71 C </line>
<line>ATOM 1245 CA ALA B 49 17.577 27.779 -2.740 1.00 16.45 C </line>
<line>ATOM 1250 CA SER B 50 16.435 30.966 -1.003 1.00 26.07 C </line>
<line>ATOM 1256 CA ARG B 51 12.631 31.213 -1.671 1.00 32.19 C </line>
<line>ATOM 1267 CA ASP B 52 9.544 28.975 -2.157 1.00 34.61 C </line>
<line>ATOM 1275 CA LYS B 53 9.334 27.040 -5.429 1.00 40.01 C </line>
<line>ATOM 1284 CA GLU B 54 12.906 27.911 -6.265 1.00 31.54 C </line>
<line>ATOM 1293 CA LYS B 55 14.832 25.017 -7.755 1.00 26.05 C </line>
<line>ATOM 1302 CA GLY B 56 18.550 24.479 -7.265 1.00 19.40 C </line>
</atom-coordinate>
<distance-map>
<line> GLY LYS GLU LYS ASP ARG SER ALA ARG PHE LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 8.80 12.45 14.93 17.82 18.39 16.90 13.99 10.79 7.30 3.82 </line>
<line>PHE CA 5.72 9.33 11.40 14.51 14.96 13.26 10.41 7.16 3.82 </line>
<line>ARG CA 5.75 8.33 9.16 12.19 11.89 9.79 6.69 3.82 </line>
<line>ALA CA 5.68 6.35 5.85 8.70 8.14 6.12 3.81 </line>
<line>SER CA 9.26 9.14 7.03 9.24 7.27 3.87 </line>
<line>ARG CA 10.57 8.96 5.66 6.51 3.84 </line>
<line>ASP CA 11.29 8.66 5.41 3.81 </line>
<line>LYS CA 9.74 6.30 3.77 </line>
<line>GLU CA 6.68 3.78 </line>
<line>LYS CA 3.79 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>LEU CA 354</line>
<line>PHE CA 347</line>
<line>ARG CA 381</line>
<line>ALA CA 348</line>
<line>SER CA 293</line>
<line>ARG CA 255</line>
<line>ASP CA 248</line>
<line>LYS CA 231</line>
<line>GLU CA 258</line>
<line>LYS CA 278</line>
<line>GLY CA 312</line>
</n14>
</entryChain>
<parallel>
<x>-22.299999237060547</x>
<y>-17.46299934387207</y>
<z>30.993000030517578</z>
</parallel>
<rotation>
<x>0.718999981880188</x>
<y>-0.3149999976158142</y>
<z>0.6200000047683716</z>
<x>-0.4620000123977661</x>
<y>-0.8820000290870667</y>
<z>0.08699999749660492</z>
<x>0.5199999809265137</x>
<y>-0.3490000069141388</y>
<z>-0.7799999713897705</z>
</rotation>
<rmsd>1.3908319473266602</rmsd>
<dmax>2.358164072036743</dmax>
</indel>