NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1ACMD-2YWWB
confEVID 1ACMD-2YWWB
pdbIDA 1ACM
pdbIDB 2YWW
pdbChainA D
pdbChainB B
identity 0.347200006246567
indelSize 2
alignment <alignment>
<seq1>GVEAIKRGTVIDHIPAQIGFKLLSLFKLTETDQRITIGLNLPSGEMGRKDLIKIENTFLSEDQVDQLALYAPQATVNRIDNYEVVGKSRPSLPERIDNVLVCPNSNCISHAEPVSSSFAVRKRANDIALKCKYCEKEFSHNVVLAN</seq1>
<seq2>KVKKITNGTVIDHIDAGKALMVFKVLNV-PKETSVMIAINVPSKKKGKKDILKIEGIELKKEDVDKISLISPDVTINIIRNGKVVEKLKPQIPDEIEGTLKCTNPNCITNKEKVRGKFKIE-SKNPLKIRCYYCEKFLNEVIFE--</seq2>
<ss_1> EEEEEEEE HHHHHHH EEEEE EEE EEEEEEEE HHHHHHHH EEEEE EEE EEEE EEEEEEEE EEEEE EEEEEHHH </ss_1>
<ss_2> EEEEEEEEE HHHHHHHH - EEEEE EEE EEEEEEEE HHHHHGGG EEEEEE EEE EEEEE HHHH EEEE - EEE --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2YWW</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>2YWWB</entryIDChain>
<sequence>KVLNV-PKETS</sequence>
<secondary-structure>HHH - E</secondary-structure>
<atom-coordinate>
<line>ATOM 1292 CA LYS B 31 36.073 49.567 40.384 1.00 25.64 C </line>
<line>ATOM 1301 CA VAL B 32 35.417 50.504 36.753 1.00 27.40 C </line>
<line>ATOM 1308 CA LEU B 33 32.569 47.988 36.518 1.00 29.71 C </line>
<line>ATOM 1316 CA ASN B 34 30.902 49.611 39.544 1.00 34.57 C </line>
<line>ATOM 1324 CA VAL B 35 28.511 46.772 40.365 1.00 33.08 C </line>
<line>ATOM 1331 CA PRO B 36 25.579 47.127 42.788 1.00 33.49 C </line>
<line>ATOM 1338 CA LYS B 37 26.714 47.171 46.430 1.00 36.60 C </line>
<line>ATOM 1347 CA GLU B 38 25.022 43.907 47.449 1.00 35.48 C </line>
<line>ATOM 1356 CA THR B 39 26.575 41.906 44.607 1.00 27.71 C </line>
<line>ATOM 1363 CA SER B 40 28.386 38.748 45.697 1.00 23.32 C </line>
</atom-coordinate>
<distance-map>
<line> SER THR GLU LYS PRO VAL ASN LEU VAL LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 14.30 12.91 14.29 11.40 11.04 8.06 5.24 5.45 3.81 </line>
<line>VAL CA 16.36 14.62 16.31 13.43 12.03 8.64 5.38 3.81 </line>
<line>LEU CA 13.68 11.76 13.90 11.54 9.43 5.72 3.82 </line>
<line>ASN CA 12.74 10.18 11.38 8.42 6.71 3.80 </line>
<line>VAL CA 9.63 6.74 8.40 6.34 3.82 </line>
<line>PRO CA 9.30 5.62 5.69 3.82 </line>
<line>LYS CA 8.62 5.57 3.82 </line>
<line>GLU CA 6.40 3.81 </line>
<line>THR CA 3.80 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>LYS CA 287</line>
<line>VAL CA 320</line>
<line>LEU CA 351</line>
<line>ASN CA 268</line>
<line>VAL CA 262</line>
<line>PRO CA 163</line>
<line>LYS CA 128</line>
<line>GLU CA 113</line>
<line>THR CA 197</line>
<line>SER CA 218</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1ACM</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1ACMD</entryIDChain>
<sequence>SLFKLTETDQR</sequence>
<secondary-structure>HH E</secondary-structure>
<atom-coordinate>
<line>ATOM 6135 CA SER D 31 30.371 68.851 44.359 1.00 57.95 C </line>
<line>ATOM 6141 CA LEU D 32 32.625 69.562 47.324 1.00 58.70 C </line>
<line>ATOM 6149 CA PHE D 33 29.680 70.278 49.636 1.00 64.11 C </line>
<line>ATOM 6160 CA LYS D 34 27.291 67.945 47.784 1.00 68.27 C </line>
<line>ATOM 6169 CA LEU D 35 24.673 70.698 47.402 1.00 67.66 C </line>
<line>ATOM 6177 CA THR D 36 22.803 68.471 45.020 1.00 78.88 C </line>
<line>ATOM 6184 CA GLU D 37 21.461 66.097 47.750 1.00 83.47 C </line>
<line>ATOM 6193 CA THR D 38 18.689 68.572 48.197 1.00 84.87 C </line>
<line>ATOM 6200 CA ASP D 39 15.052 68.774 47.302 1.00 91.12 C </line>
<line>ATOM 6208 CA GLN D 40 14.457 72.576 47.369 1.00 86.16 C </line>
<line>ATOM 6217 CA ARG D 41 15.781 75.159 44.940 1.00 74.43 C </line>
</atom-coordinate>
<distance-map>
<line> ARG GLN ASP THR GLU THR LEU LYS PHE LEU SER </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 15.91 16.62 15.60 12.30 9.92 7.61 6.72 4.69 5.51 3.79 </line>
<line>LEU CA 17.91 18.42 17.59 14.00 11.70 10.15 8.03 5.59 3.81 </line>
<line>PHE CA 15.46 15.56 14.89 11.22 9.41 8.48 5.50 3.82 </line>
<line>LYS CA 13.88 13.65 12.28 8.63 6.12 5.30 3.82 </line>
<line>LEU CA 10.25 10.39 9.81 6.40 5.62 3.76 </line>
<line>THR CA 9.70 9.59 8.09 5.20 3.86 </line>
<line>GLU CA 11.06 9.55 6.96 3.74 </line>
<line>THR CA 7.90 5.88 3.75 </line>
<line>ASP CA 6.85 3.85 </line>
<line>GLN CA 3.78 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>SER CA 227</line>
<line>LEU CA 293</line>
<line>PHE CA 313</line>
<line>LYS CA 243</line>
<line>LEU CA 296</line>
<line>THR CA 218</line>
<line>GLU CA 165</line>
<line>THR CA 194</line>
<line>ASP CA 139</line>
<line>GLN CA 198</line>
<line>ARG CA 230</line>
</n14>
</entryChain>
<parallel>
<x>5.118000030517578</x>
<y>-21.016000747680664</y>
<z>-6.190000057220459</z>
</parallel>
<rotation>
<x>0.6359999775886536</x>
<y>0.3970000147819519</y>
<z>-0.6620000004768372</z>
<x>0.3490000069141388</x>
<y>-0.9129999876022339</y>
<z>-0.21199999749660492</z>
<x>-0.6890000104904175</x>
<y>-0.09600000083446503</y>
<z>-0.718999981880188</z>
</rotation>
<rmsd>1.6194820404052734</rmsd>
<dmax>2.512028932571411</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2YWW</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>2YWWB</entryIDChain>
<sequence>KFKIE-SKNPL</sequence>
<secondary-structure>EEE - </secondary-structure>
<atom-coordinate>
<line>ATOM 2005 CA LYS B 123 35.560 62.501 23.454 1.00 28.14 C </line>
<line>ATOM 2014 CA PHE B 124 38.335 60.171 22.363 1.00 24.69 C </line>
<line>ATOM 2025 CA LYS B 125 39.460 58.081 19.412 1.00 28.33 C </line>
<line>ATOM 2034 CA ILE B 126 41.588 54.928 19.494 1.00 26.54 C </line>
<line>ATOM 2042 CA GLU B 127 44.264 55.173 16.815 1.00 27.33 C </line>
<line>ATOM 2051 CA SER B 128 46.181 52.014 17.687 1.00 27.09 C </line>
<line>ATOM 2057 CA LYS B 129 45.204 48.864 19.566 1.00 30.28 C </line>
<line>ATOM 2066 CA ASN B 130 48.608 47.317 20.241 1.00 33.09 C </line>
<line>ATOM 2074 CA PRO B 131 50.113 49.372 21.632 1.00 27.90 C </line>
<line>ATOM 2081 CA LEU B 132 46.950 51.146 22.764 1.00 23.06 C </line>
</atom-coordinate>
<distance-map>
<line> LEU PRO ASN LYS SER GLU ILE LYS PHE LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 16.10 19.68 20.28 17.15 16.00 13.17 10.46 7.15 3.78 </line>
<line>PHE CA 12.48 16.00 16.59 13.52 12.25 9.53 6.80 3.79 </line>
<line>LYS CA 10.74 13.94 14.15 10.86 9.22 6.19 3.80 </line>
<line>ILE CA 7.33 10.40 10.38 7.06 5.73 3.79 </line>
<line>GLU CA 7.67 9.54 9.61 6.95 3.80 </line>
<line>SER CA 5.21 6.16 5.87 3.80 </line>
<line>LYS CA 4.30 5.35 3.80 </line>
<line>ASN CA 4.88 2.90 </line>
<line>PRO CA 3.80 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>LYS CA 326</line>
<line>PHE CA 369</line>
<line>LYS CA 308</line>
<line>ILE CA 310</line>
<line>GLU CA 221</line>
<line>SER CA 204</line>
<line>LYS CA 233</line>
<line>ASN CA 166</line>
<line>PRO CA 180</line>
<line>LEU CA 266</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1ACM</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1ACMD</entryIDChain>
<sequence>SFAVRKRANDI</sequence>
<secondary-structure>EEEEEEE E</secondary-structure>
<atom-coordinate>
<line>ATOM 6857 CA SER D 124 43.318 65.753 59.709 1.00 21.43 C </line>
<line>ATOM 6863 CA PHE D 125 45.628 68.715 59.088 1.00 24.47 C </line>
<line>ATOM 6874 CA ALA D 126 46.618 71.725 61.141 1.00 33.03 C </line>
<line>ATOM 6879 CA VAL D 127 46.243 75.098 59.398 1.00 47.31 C </line>
<line>ATOM 6886 CA ARG D 128 49.084 77.585 60.060 1.00 59.63 C </line>
<line>ATOM 6897 CA LYS D 129 48.795 80.758 58.057 1.00 73.03 C </line>
<line>ATOM 6906 CA ARG D 130 52.439 80.898 57.059 1.00 82.30 C </line>
<line>ATOM 6917 CA ALA D 131 53.453 84.412 55.824 1.00 88.70 C </line>
<line>ATOM 6922 CA ASN D 132 52.826 83.860 52.078 1.00 87.44 C </line>
<line>ATOM 6930 CA ASP D 133 50.355 80.908 52.275 1.00 69.06 C </line>
<line>ATOM 6938 CA ILE D 134 48.569 78.354 54.418 1.00 44.34 C </line>
</atom-coordinate>
<distance-map>
<line> ILE ASP ASN ALA ARG LYS ARG VAL ALA PHE SER </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 14.64 18.29 21.83 21.59 17.88 16.06 13.17 9.80 6.97 3.81 </line>
<line>PHE CA 11.11 14.75 18.17 17.84 14.10 12.50 9.57 6.42 3.78 </line>
<line>ALA CA 9.64 13.30 16.37 15.36 11.61 9.79 6.45 3.82 </line>
<line>VAL CA 6.39 10.07 13.18 12.31 8.80 6.35 3.83 </line>
<line>ARG CA 5.72 8.56 10.82 9.15 5.59 3.76 </line>
<line>LYS CA 4.37 5.99 7.85 6.33 3.78 </line>
<line>ARG CA 5.33 5.22 5.81 3.86 </line>
<line>ALA CA 7.91 5.87 3.84 </line>
<line>ASN CA 7.34 3.85 </line>
<line>ASP CA 3.78 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>SER CA 321</line>
<line>PHE CA 379</line>
<line>ALA CA 328</line>
<line>VAL CA 340</line>
<line>ARG CA 254</line>
<line>LYS CA 225</line>
<line>ARG CA 178</line>
<line>ALA CA 118</line>
<line>ASN CA 127</line>
<line>ASP CA 210</line>
<line>ILE CA 287</line>
</n14>
</entryChain>
<parallel>
<x>-6.301000118255615</x>
<y>-21.125</y>
<z>-38.16600036621094</z>
</parallel>
<rotation>
<x>0.9779999852180481</x>
<y>0.20900000631809235</y>
<z>-0.02199999988079071</z>
<x>0.17100000381469727</x>
<y>-0.8510000109672546</y>
<z>-0.4970000088214874</z>
<x>-0.12200000137090683</x>
<y>0.4819999933242798</y>
<z>-0.8669999837875366</z>
</rotation>
<rmsd>2.0394809246063232</rmsd>
<dmax>4.272387981414795</dmax>
</indel>