NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1ACPA-2DEGF
confEVID 1ACPA-2DEGF
pdbIDA 1ACP
pdbIDB 2DEG
pdbChainA A
pdbChainB F
identity 0.0724999979138374
indelSize 2
alignment <alignment>
<seq1>STIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDT-----EIPDEEAE--------------KITTVQAAIDYINGHQA</seq1>
<seq2>-------------------GKVYKKVELVGTSEEGLEAAIQAALA--RARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEE--------</seq2>
<ss_1> EEHHHHHHH HHHHHHHHHHHHHH ----- -------------- HHHHHHHHHH </ss_1>
<ss_2>------------------- EEEEEEEEEEE HHHHHHHHHH--HH EEE EEEEEEE EEEEEEEEEE --------</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1ACP</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1ACPA</entryIDChain>
<sequence>EEFDT-----EIPDE</sequence>
<secondary-structure>HH ----- </secondary-structure>
<atom-coordinate>
<line>ATOM 506 CA GLU A 48 -5.077 8.349 7.146 1.00 0.00 C </line>
<line>ATOM 517 CA GLU A 49 -2.822 5.754 8.919 1.00 0.00 C </line>
<line>ATOM 528 CA PHE A 50 0.207 7.150 7.095 1.00 0.00 C </line>
<line>ATOM 542 CA ASP A 51 -1.124 10.781 7.287 1.00 0.00 C </line>
<line>ATOM 552 CA THR A 52 0.503 12.078 4.096 1.00 0.00 C </line>
<line>ATOM 563 CA GLU A 53 0.000 12.959 0.357 1.00 0.00 C </line>
<line>ATOM 574 CA ILE A 54 1.910 11.419 -2.533 1.00 0.00 C </line>
<line>ATOM 585 CA PRO A 55 3.692 12.880 -5.566 1.00 0.00 C </line>
<line>ATOM 595 CA ASP A 56 4.303 10.262 -8.249 1.00 0.00 C </line>
<line>ATOM 605 CA GLU A 57 8.090 9.904 -7.678 1.00 0.00 C </line>
</atom-coordinate>
<distance-map>
<line> GLU ASP PRO ILE GLU THR ASP PHE GLU GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 19.89 18.13 16.09 12.33 9.65 7.37 4.64 5.42 3.87 </line>
<line>GLU CA 20.29 19.13 17.41 13.62 11.54 8.62 5.55 3.80 </line>
<line>PHE CA 16.97 16.18 14.33 10.67 8.90 5.78 3.87 </line>
<line>ASP CA 17.60 16.46 13.89 10.30 7.35 3.81 </line>
<line>THR CA 14.17 13.04 10.21 6.81 3.87 </line>
<line>GLU CA 11.80 9.99 6.98 3.79 </line>
<line>ILE CA 8.18 6.30 3.81 </line>
<line>PRO CA 5.71 3.80 </line>
<line>ASP CA 3.85 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>GLU CA 313</line>
<line>GLU CA 379</line>
<line>PHE CA 409</line>
<line>ASP CA 307</line>
<line>THR CA 322</line>
<line>GLU CA 299</line>
<line>ILE CA 331</line>
<line>PRO CA 234</line>
<line>ASP CA 227</line>
<line>GLU CA 221</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2DEG</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2DEGF</entryIDChain>
<sequence>RARKTLRHLDWFEVK</sequence>
<secondary-structure>HH EEE </secondary-structure>
<atom-coordinate>
<line>ATOM 2865 CA ARG F 28 -9.488 35.861 41.527 1.00 27.19 C </line>
<line>ATOM 2876 CA ALA F 29 -6.204 34.309 42.650 1.00 27.32 C </line>
<line>ATOM 2881 CA ARG F 30 -4.362 36.595 40.134 1.00 32.33 C </line>
<line>ATOM 2892 CA LYS F 31 -5.772 39.645 41.914 1.00 34.67 C </line>
<line>ATOM 2901 CA THR F 32 -4.015 39.166 45.292 1.00 36.86 C </line>
<line>ATOM 2908 CA LEU F 33 -1.464 36.435 44.706 1.00 35.37 C </line>
<line>ATOM 2916 CA ARG F 34 1.857 36.787 42.898 1.00 36.50 C </line>
<line>ATOM 2927 CA HIS F 35 3.964 34.203 41.015 1.00 34.06 C </line>
<line>ATOM 2937 CA LEU F 36 1.077 31.783 40.242 1.00 31.02 C </line>
<line>ATOM 2945 CA ASP F 37 2.638 28.601 38.830 1.00 29.28 C </line>
<line>ATOM 2953 CA TRP F 38 0.270 25.591 38.888 1.00 26.75 C </line>
<line>ATOM 2967 CA PHE F 39 -3.103 24.284 40.091 1.00 23.90 C </line>
<line>ATOM 2978 CA GLU F 40 -4.400 20.860 41.186 1.00 23.86 C </line>
<line>ATOM 2987 CA VAL F 41 -8.087 20.038 41.133 1.00 21.81 C </line>
<line>ATOM 2994 CA LYS F 42 -9.183 18.385 44.403 1.00 24.69 C </line>
</atom-coordinate>
<distance-map>
<line> LYS VAL GLU PHE TRP ASP LEU HIS ARG LEU THR LYS ARG ALA ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 17.71 15.89 15.84 13.30 14.41 14.39 11.40 13.56 11.46 8.65 7.42 5.32 5.36 3.80 </line>
<line>ALA CA 16.29 14.47 13.65 10.80 11.49 11.20 8.07 10.30 8.44 5.59 5.95 5.40 3.87 </line>
<line>ARG CA 19.32 17.00 15.77 12.38 12.00 10.71 7.26 8.71 6.81 5.42 5.77 3.80 </line>
<line>LYS CA 21.68 19.76 18.85 15.70 15.59 14.22 10.56 11.19 8.21 6.05 3.84 </line>
<line>THR CA 21.43 19.99 18.76 15.79 15.61 14.06 10.29 10.32 6.77 3.78 </line>
<line>LEU CA 19.63 18.04 16.24 13.10 12.43 10.62 6.93 6.93 3.80 </line>
<line>ARG CA 21.51 19.56 17.20 13.74 12.00 9.17 5.72 3.83 </line>
<line>HIS CA 20.85 18.60 15.75 12.21 9.61 6.16 3.85 </line>
<line>LEU CA 17.38 14.92 12.26 8.59 6.39 3.82 </line>
<line>ASP CA 16.59 13.92 10.72 7.29 3.83 </line>
<line>TRP CA 13.10 10.28 7.03 3.81 </line>
<line>PHE CA 9.51 6.63 3.82 </line>
<line>GLU CA 6.27 3.78 </line>
<line>VAL CA 3.82 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>ARG CA 219</line>
<line>ALA CA 271</line>
<line>ARG CA 217</line>
<line>LYS CA 149</line>
<line>THR CA 172</line>
<line>LEU CA 233</line>
<line>ARG CA 218</line>
<line>HIS CA 222</line>
<line>LEU CA 275</line>
<line>ASP CA 243</line>
<line>TRP CA 255</line>
<line>PHE CA 291</line>
<line>GLU CA 247</line>
<line>VAL CA 252</line>
<line>LYS CA 206</line>
</n14>
</entryChain>
<parallel>
<x>4.295000076293945</x>
<y>-21.868000030517578</y>
<z>-38.11000061035156</z>
</parallel>
<rotation>
<x>0.800000011920929</x>
<y>0.5709999799728394</y>
<z>0.1850000023841858</z>
<x>-0.07599999755620956</x>
<y>-0.20900000631809235</y>
<z>0.9750000238418579</z>
<x>-0.5950000286102295</x>
<y>0.7940000295639038</y>
<z>0.12300000339746475</z>
</rotation>
<rmsd>4.505289077758789</rmsd>
<dmax>7.494775772094727</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2DEG</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2DEGF</entryIDChain>
<sequence>QAALA--RARKT</sequence>
<secondary-structure>HHHHH--HH </secondary-structure>
<atom-coordinate>
<line>ATOM 2833 CA GLN F 23 -10.840 30.027 35.389 1.00 25.71 C </line>
<line>ATOM 2842 CA ALA F 24 -13.012 31.931 37.896 1.00 25.03 C </line>
<line>ATOM 2847 CA ALA F 25 -10.803 30.751 40.750 1.00 23.34 C </line>
<line>ATOM 2852 CA LEU F 26 -7.655 31.554 38.852 1.00 24.17 C </line>
<line>ATOM 2860 CA ALA F 27 -8.815 35.069 37.858 1.00 26.66 C </line>
<line>ATOM 2865 CA ARG F 28 -9.488 35.861 41.527 1.00 27.19 C </line>
<line>ATOM 2876 CA ALA F 29 -6.204 34.309 42.650 1.00 27.32 C </line>
<line>ATOM 2881 CA ARG F 30 -4.362 36.595 40.134 1.00 32.33 C </line>
<line>ATOM 2892 CA LYS F 31 -5.772 39.645 41.914 1.00 34.67 C </line>
<line>ATOM 2901 CA THR F 32 -4.015 39.166 45.292 1.00 36.86 C </line>
</atom-coordinate>
<distance-map>
<line> THR LYS ARG ALA ARG ALA LEU ALA ALA GLN </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLN CA 15.11 12.68 10.37 9.62 8.58 5.97 4.95 5.41 3.82 </line>
<line>ALA CA 13.71 11.32 10.08 8.64 6.41 5.24 5.45 3.80 </line>
<line>ALA CA 11.73 10.28 8.72 6.12 5.33 5.56 3.76 </line>
<line>LEU CA 10.61 8.85 6.16 4.91 5.39 3.83 </line>
<line>ALA CA 9.75 6.83 5.23 5.51 3.81 </line>
<line>ARG CA 7.42 5.32 5.36 3.80 </line>
<line>ALA CA 5.95 5.40 3.87 </line>
<line>ARG CA 5.77 3.80 </line>
<line>LYS CA 3.84 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>GLN CA 262</line>
<line>ALA CA 263</line>
<line>ALA CA 323</line>
<line>LEU CA 291</line>
<line>ALA CA 223</line>
<line>ARG CA 219</line>
<line>ALA CA 271</line>
<line>ARG CA 217</line>
<line>LYS CA 149</line>
<line>THR CA 172</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1ACP</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1ACPA</entryIDChain>
<sequence>ELVMALEEEFDT</sequence>
<secondary-structure>HHHHHHHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 435 CA GLU A 41 -10.938 2.284 0.780 1.00 0.00 C </line>
<line>ATOM 446 CA LEU A 42 -7.546 0.853 1.712 1.00 0.00 C </line>
<line>ATOM 457 CA VAL A 43 -5.631 3.739 0.126 1.00 0.00 C </line>
<line>ATOM 467 CA MET A 44 -8.166 5.813 2.107 1.00 0.00 C </line>
<line>ATOM 477 CA ALA A 45 -7.085 3.706 5.124 1.00 0.00 C </line>
<line>ATOM 484 CA LEU A 46 -3.371 4.171 4.209 1.00 0.00 C </line>
<line>ATOM 495 CA GLU A 47 -3.950 7.941 3.558 1.00 0.00 C </line>
<line>ATOM 506 CA GLU A 48 -5.077 8.349 7.146 1.00 0.00 C </line>
<line>ATOM 517 CA GLU A 49 -2.822 5.754 8.919 1.00 0.00 C </line>
<line>ATOM 528 CA PHE A 50 0.207 7.150 7.095 1.00 0.00 C </line>
<line>ATOM 542 CA ASP A 51 -1.124 10.781 7.287 1.00 0.00 C </line>
<line>ATOM 552 CA THR A 52 0.503 12.078 4.096 1.00 0.00 C </line>
</atom-coordinate>
<distance-map>
<line> THR ASP PHE GLU GLU GLU LEU ALA MET VAL LEU GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 15.42 14.52 13.70 12.01 10.57 9.41 8.52 5.98 4.68 5.54 3.80 </line>
<line>LEU CA 14.02 13.07 11.35 9.91 9.58 8.16 5.89 4.47 5.01 3.81 </line>
<line>VAL CA 11.09 11.01 9.71 9.45 8.42 5.68 4.69 5.21 3.83 </line>
<line>MET CA 10.88 10.06 9.84 8.66 6.43 4.94 5.49 3.84 </line>
<line>ALA CA 11.35 9.50 8.30 6.06 5.45 5.50 3.85 </line>
<line>LEU CA 8.81 7.63 5.48 5.00 5.38 3.87 </line>
<line>GLU CA 6.10 5.47 5.52 5.90 3.78 </line>
<line>GLU CA 7.37 4.64 5.42 3.87 </line>
<line>GLU CA 8.62 5.55 3.80 </line>
<line>PHE CA 5.78 3.87 </line>
<line>ASP CA 3.81 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>GLU CA 290</line>
<line>LEU CA 429</line>
<line>VAL CA 483</line>
<line>MET CA 341</line>
<line>ALA CA 401</line>
<line>LEU CA 519</line>
<line>GLU CA 413</line>
<line>GLU CA 313</line>
<line>GLU CA 379</line>
<line>PHE CA 409</line>
<line>ASP CA 307</line>
<line>THR CA 322</line>
</n14>
</entryChain>
<parallel>
<x>-3.015000104904175</x>
<y>28.555999755859375</y>
<z>35.25600051879883</z>
</parallel>
<rotation>
<x>0.09200000017881393</x>
<y>0.14399999380111694</y>
<z>0.9850000143051147</z>
<x>0.9760000109672546</x>
<y>-0.210999995470047</y>
<z>-0.061000000685453415</z>
<x>0.19900000095367432</x>
<y>0.9670000076293945</y>
<z>-0.1599999964237213</z>
</rotation>
<rmsd>3.068985939025879</rmsd>
<dmax>5.251120090484619</dmax>
</indel>