NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1ACMC-3GD5C
confEVID 1ACMC-3GD5C
pdbIDA 1ACM
pdbIDB 3GD5
pdbChainA C
pdbChainB C
identity 0.26690000295639
indelSize 3
alignment <alignment>
<seq1>ANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTATRLSFQTSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQQTEGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPEYILDMLDEK----GI--AWSLHSSIEEVMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRV--DEIATDVDKTPHAWYFQQAGNGIFARQALLALVLNRDLVL</seq1>
<seq2>--TRFRPDLLSLDDLDEAQLHALLTLAHQLKRGERVANLHGKVLGLVFLKASTRTRVSFTVAMYQLGGQVIDL------------EPVRDTARVLGRYVDGLAIRTFAQTELEEYAHYAG-IPVINALTD-HEHPCQVVADLLTIRENFGRLAGLKLAYVGDG--NNVAHSLLLGCAKV-GMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQIL--RDPFEAARGAHILYTDVWTHR--LQLFEQY-----QINAALLNCAAAEAIVLHCLPAHRGEEITDEVMEGPRSRIWDEAENRLHAQKAVLAALMG-----</seq2>
<ss_1> GGG HHHHHHHHHHHHHH EEEEE HHHHHHHHHHHH EEEEE GGG HHHHHHHHHHHH EEEEE HHHHHHHHH EE HHHHHHHHHHHHH EEEEE HHHHHHHHHGGG EEEEE HHHHHHHH ---- --EEE HHHH EEE GGG GGGG GGGGGG EEE -- GGG HHHHHHHHHHHHHHHHHHH </ss_1>
<ss_2>-- GGG HHHHHHHHHHHHHHH EEEEE HHHHHHHHHHHHH EEEEE------------ HHHHHHH EEEEE HHHHHHHHHHH - - HHHHHHHHHHHHH EEEEE -- HHHHHHHHHHHH - EEEEE HHHHHHHHHHH EEE-- HHHH EEEE --HHHH ----- HHHHH EEE HHHH HHHHHHHHHHHHHHHHHHH -----</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1ACM</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1ACMC</entryIDChain>
<sequence>PLPRV--DEIAT</sequence>
<secondary-structure> -- </secondary-structure>
<atom-coordinate>
<line>ATOM 5602 CA PRO C 266 72.872 55.997 65.220 1.00 2.00 C </line>
<line>ATOM 5609 CA LEU C 267 74.190 53.011 63.222 1.00 5.17 C </line>
<line>ATOM 5617 CA PRO C 268 74.258 50.943 61.040 1.00 3.23 C </line>
<line>ATOM 5624 CA ARG C 269 77.067 52.681 59.205 1.00 9.77 C </line>
<line>ATOM 5635 CA VAL C 270 78.000 51.850 55.684 1.00 10.16 C </line>
<line>ATOM 5642 CA ASP C 271 80.884 53.782 54.036 1.00 19.16 C </line>
<line>ATOM 5650 CA GLU C 272 80.559 57.199 55.685 1.00 14.24 C </line>
<line>ATOM 5659 CA ILE C 273 82.794 56.373 58.682 1.00 12.72 C </line>
<line>ATOM 5667 CA ALA C 274 86.068 54.669 57.865 1.00 13.36 C </line>
<line>ATOM 5672 CA THR C 275 87.075 52.085 60.460 1.00 16.74 C </line>
</atom-coordinate>
<distance-map>
<line> THR ALA ILE GLU ASP VAL ARG PRO LEU PRO </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>PRO CA 15.48 15.17 11.89 12.31 13.93 11.59 8.05 6.70 3.83 </line>
<line>LEU CA 13.21 13.14 10.29 10.72 11.39 8.53 4.95 3.01 </line>
<line>PRO CA 12.88 12.78 10.39 10.37 10.05 6.60 3.78 </line>
<line>ARG CA 10.10 9.31 6.83 6.71 6.52 3.74 </line>
<line>VAL CA 10.26 8.82 7.24 5.93 3.84 </line>
<line>ASP CA 9.08 6.51 5.65 3.81 </line>
<line>GLU CA 9.56 6.44 3.83 </line>
<line>ILE CA 6.31 3.78 </line>
<line>ALA CA 3.80 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>PRO CA 515</line>
<line>LEU CA 427</line>
<line>PRO CA 347</line>
<line>ARG CA 356</line>
<line>VAL CA 266</line>
<line>ASP CA 273</line>
<line>GLU CA 382</line>
<line>ILE CA 374</line>
<line>ALA CA 275</line>
<line>THR CA 231</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3GD5</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>3GD5C</entryIDChain>
<sequence>CLPAHRGEEITD</sequence>
<secondary-structure> H</secondary-structure>
<atom-coordinate>
<line>ATOM 6262 CA CYS C 272 11.534 50.735 44.490 1.00 28.78 C </line>
<line>ATOM 6268 CA LEU C 273 13.463 47.795 46.016 1.00 30.47 C </line>
<line>ATOM 6276 CA PRO C 274 15.513 46.020 47.182 1.00 30.06 C </line>
<line>ATOM 6283 CA ALA C 275 14.771 46.897 50.796 1.00 32.66 C </line>
<line>ATOM 6288 CA HIS C 276 16.783 46.795 54.016 1.00 34.64 C </line>
<line>ATOM 6298 CA ARG C 277 14.332 46.139 56.862 1.00 36.48 C </line>
<line>ATOM 6309 CA GLY C 278 15.392 48.126 59.910 1.00 34.41 C </line>
<line>ATOM 6313 CA GLU C 279 16.953 50.925 57.853 1.00 33.70 C </line>
<line>ATOM 6322 CA GLU C 280 14.805 52.981 55.441 1.00 32.26 C </line>
<line>ATOM 6331 CA ILE C 281 11.713 50.949 56.322 1.00 34.71 C </line>
<line>ATOM 6339 CA THR C 282 10.357 48.568 58.918 1.00 34.76 C </line>
<line>ATOM 6346 CA ASP C 283 9.150 45.045 58.229 1.00 34.59 C </line>
</atom-coordinate>
<distance-map>
<line> ASP THR ILE GLU GLU GLY ARG HIS ALA PRO LEU CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 15.06 14.64 11.84 11.65 14.42 16.11 13.49 11.57 8.06 6.73 3.83 </line>
<line>LEU CA 13.24 13.29 10.92 10.84 12.73 14.03 11.01 8.72 5.04 2.95 </line>
<line>PRO CA 12.79 13.07 11.06 10.82 11.83 12.90 9.75 6.99 3.79 </line>
<line>ALA CA 9.50 9.39 7.50 7.65 8.41 9.22 6.13 3.80 </line>
<line>HIS CA 8.89 8.27 6.95 6.65 5.64 6.20 3.81 </line>
<line>ARG CA 5.47 5.09 5.50 7.00 5.55 3.79 </line>
<line>GLY CA 7.16 5.15 5.86 6.62 3.81 </line>
<line>GLU CA 9.78 7.08 5.46 3.83 </line>
<line>GLU CA 10.14 7.17 3.80 </line>
<line>ILE CA 6.71 3.77 </line>
<line>THR CA 3.79 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>CYS CA 503</line>
<line>LEU CA 419</line>
<line>PRO CA 332</line>
<line>ALA CA 332</line>
<line>HIS CA 279</line>
<line>ARG CA 272</line>
<line>GLY CA 258</line>
<line>GLU CA 324</line>
<line>GLU CA 440</line>
<line>ILE CA 419</line>
<line>THR CA 313</line>
<line>ASP CA 249</line>
</n14>
</entryChain>
<parallel>
<x>63.13600158691406</x>
<y>4.8420000076293945</y>
<z>7.581999778747559</z>
</parallel>
<rotation>
<x>-0.5569999814033508</x>
<y>-0.18700000643730164</y>
<z>-0.8090000152587891</z>
<x>-0.0729999989271164</x>
<y>0.9810000061988831</y>
<z>-0.1770000010728836</z>
<x>0.8270000219345093</x>
<y>-0.03999999910593033</y>
<z>-0.5600000023841858</z>
</rotation>
<rmsd>0.8649349808692932</rmsd>
<dmax>1.542417049407959</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>3GD5</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>3GD5C</entryIDChain>
<sequence>AHYAG-IPVIN</sequence>
<secondary-structure>HHHH - </secondary-structure>
<atom-coordinate>
<line>ATOM 5196 CA ALA C 121 21.962 57.314 22.068 1.00 47.05 C </line>
<line>ATOM 5201 CA HIS C 122 24.168 59.551 19.950 1.00 50.67 C </line>
<line>ATOM 5211 CA TYR C 123 25.701 56.740 17.865 1.00 45.48 C </line>
<line>ATOM 5223 CA ALA C 124 23.317 53.770 18.191 1.00 43.97 C </line>
<line>ATOM 5228 CA GLY C 125 20.945 54.854 15.436 1.00 39.64 C </line>
<line>ATOM 5232 CA ILE C 126 18.159 53.131 17.342 1.00 35.64 C </line>
<line>ATOM 5240 CA PRO C 127 16.014 54.097 20.356 1.00 35.10 C </line>
<line>ATOM 5247 CA VAL C 128 17.908 54.090 23.640 1.00 34.51 C </line>
<line>ATOM 5254 CA ILE C 129 16.131 53.663 26.985 1.00 32.57 C </line>
<line>ATOM 5262 CA ASN C 130 17.648 54.600 30.368 1.00 31.52 C </line>
</atom-coordinate>
<distance-map>
<line> ASN ILE VAL PRO ILE GLY ALA TYR HIS ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 9.74 8.46 5.41 6.98 7.37 7.15 5.42 5.65 3.79 </line>
<line>HIS CA 13.25 12.20 9.09 9.82 9.17 7.27 6.10 3.82 </line>
<line>TYR CA 15.03 13.57 10.06 10.35 8.38 5.66 3.82 </line>
<line>ALA CA 13.46 11.36 7.68 7.62 5.27 3.79 </line>
<line>GLY CA 15.29 12.57 8.78 7.01 3.79 </line>
<line>ILE CA 13.12 9.87 6.38 3.82 </line>
<line>PRO CA 10.16 6.64 3.79 </line>
<line>VAL CA 6.75 3.81 </line>
<line>ILE CA 3.82 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>ALA CA 361</line>
<line>HIS CA 276</line>
<line>TYR CA 269</line>
<line>ALA CA 332</line>
<line>GLY CA 270</line>
<line>ILE CA 345</line>
<line>PRO CA 393</line>
<line>VAL CA 483</line>
<line>ILE CA 545</line>
<line>ASN CA 534</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1ACM</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1ACMC</entryIDChain>
<sequence>TEFSGNVPVLN</sequence>
<secondary-structure>HHHH EE</secondary-structure>
<atom-coordinate>
<line>ATOM 4419 CA THR C 116 47.384 55.313 69.700 1.00 12.18 C </line>
<line>ATOM 4426 CA GLU C 117 43.841 55.794 68.300 1.00 15.34 C </line>
<line>ATOM 4435 CA PHE C 118 43.255 52.111 68.718 1.00 9.21 C </line>
<line>ATOM 4446 CA SER C 119 45.445 51.486 71.675 1.00 11.40 C </line>
<line>ATOM 4452 CA GLY C 120 42.884 52.181 74.424 1.00 17.36 C </line>
<line>ATOM 4456 CA ASN C 121 44.680 52.627 77.715 1.00 29.84 C </line>
<line>ATOM 4464 CA VAL C 122 47.871 50.948 76.584 1.00 10.06 C </line>
<line>ATOM 4471 CA PRO C 123 50.839 53.295 75.997 1.00 7.29 C </line>
<line>ATOM 4478 CA VAL C 124 52.467 52.959 72.544 1.00 10.80 C </line>
<line>ATOM 4485 CA LEU C 125 56.220 53.766 72.295 1.00 7.99 C </line>
<line>ATOM 4493 CA ASN C 126 57.623 54.622 68.853 1.00 3.83 C </line>
</atom-coordinate>
<distance-map>
<line> ASN LEU VAL PRO VAL ASN GLY SER PHE GLU THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 10.30 9.34 6.28 7.46 8.17 8.88 7.24 4.72 5.32 3.84 </line>
<line>GLU CA 13.84 13.16 10.02 10.70 10.41 9.97 7.17 5.70 3.75 </line>
<line>PHE CA 14.59 13.55 10.01 10.58 9.19 9.12 5.72 3.73 </line>
<line>SER CA 12.89 11.03 7.23 7.14 5.50 6.19 3.82 </line>
<line>GLY CA 15.94 13.60 9.80 8.19 5.57 3.78 </line>
<line>ASN CA 15.81 12.80 9.35 6.43 3.78 </line>
<line>VAL CA 12.98 9.80 6.44 3.83 </line>
<line>PRO CA 9.94 6.55 3.83 </line>
<line>VAL CA 6.56 3.85 </line>
<line>LEU CA 3.81 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>THR CA 329</line>
<line>GLU CA 231</line>
<line>PHE CA 261</line>
<line>SER CA 316</line>
<line>GLY CA 237</line>
<line>ASN CA 240</line>
<line>VAL CA 339</line>
<line>PRO CA 405</line>
<line>VAL CA 492</line>
<line>LEU CA 557</line>
<line>ASN CA 535</line>
</n14>
</entryChain>
<parallel>
<x>-25.72599983215332</x>
<y>2.431999921798706</y>
<z>-52.887001037597656</z>
</parallel>
<rotation>
<x>-0.5049999952316284</x>
<y>-0.30399999022483826</y>
<z>0.8080000281333923</z>
<x>-0.3140000104904175</x>
<y>0.9369999766349792</y>
<z>0.1550000011920929</z>
<x>-0.8040000200271606</x>
<y>-0.17499999701976776</y>
<z>-0.5690000057220459</z>
</rotation>
<rmsd>0.7706810235977173</rmsd>
<dmax>1.038835048675537</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>3GD5</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>3GD5C</entryIDChain>
<sequence>GCAKV-GMSIA</sequence>
<secondary-structure>HHHH - EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 5611 CA GLY C 176 7.522 62.977 37.181 1.00 28.26 C </line>
<line>ATOM 5615 CA CYS C 177 5.369 64.303 40.035 1.00 30.83 C </line>
<line>ATOM 5621 CA ALA C 178 5.743 67.898 38.814 1.00 32.92 C </line>
<line>ATOM 5626 CA LYS C 179 4.768 66.859 35.264 1.00 31.95 C </line>
<line>ATOM 5635 CA VAL C 180 1.504 65.246 36.408 1.00 28.15 C </line>
<line>ATOM 5642 CA GLY C 181 0.587 68.022 38.824 1.00 31.43 C </line>
<line>ATOM 5646 CA MET C 182 1.450 65.984 41.928 1.00 31.71 C </line>
<line>ATOM 5654 CA SER C 183 3.095 67.834 44.817 1.00 32.09 C </line>
<line>ATOM 5660 CA ILE C 184 6.335 66.415 46.161 1.00 31.53 C </line>
<line>ATOM 5668 CA ALA C 185 8.327 66.864 49.344 1.00 29.93 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ILE SER MET GLY VAL LYS ALA CYS GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 12.79 9.69 10.07 8.27 8.73 6.48 5.13 5.48 3.81 </line>
<line>CYS CA 10.10 6.55 6.36 4.67 6.18 5.38 5.45 3.82 </line>
<line>ALA CA 10.89 7.52 6.56 5.64 5.16 5.55 3.83 </line>
<line>LYS CA 14.52 11.02 9.75 7.50 5.61 3.82 </line>
<line>VAL CA 14.71 10.95 8.94 5.57 3.79 </line>
<line>GLY CA 13.11 9.46 6.50 3.81 </line>
<line>MET CA 10.15 6.48 3.80 </line>
<line>SER CA 6.99 3.78 </line>
<line>ILE CA 3.78 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>GLY CA 557</line>
<line>CYS CA 539</line>
<line>ALA CA 422</line>
<line>LYS CA 415</line>
<line>VAL CA 414</line>
<line>GLY CA 345</line>
<line>MET CA 415</line>
<line>SER CA 404</line>
<line>ILE CA 485</line>
<line>ALA CA 455</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1ACM</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1ACMC</entryIDChain>
<sequence>ALAKFDGNRFY</sequence>
<secondary-structure>HGGG EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 4871 CA ALA C 175 65.069 68.120 70.989 1.00 8.75 C </line>
<line>ATOM 4876 CA LEU C 176 68.269 70.152 70.939 1.00 7.68 C </line>
<line>ATOM 4884 CA ALA C 177 66.146 73.201 69.909 1.00 11.71 C </line>
<line>ATOM 4889 CA LYS C 178 64.599 72.929 73.404 1.00 11.73 C </line>
<line>ATOM 4898 CA PHE C 179 67.815 73.864 75.161 1.00 7.74 C </line>
<line>ATOM 4909 CA ASP C 180 69.527 77.206 74.968 1.00 18.67 C </line>
<line>ATOM 4917 CA GLY C 181 72.082 78.427 72.545 1.00 18.37 C </line>
<line>ATOM 4921 CA ASN C 182 72.857 75.369 70.396 1.00 20.51 C </line>
<line>ATOM 4929 CA ARG C 183 74.377 76.093 67.020 1.00 15.33 C </line>
<line>ATOM 4940 CA PHE C 184 73.589 73.626 64.171 1.00 14.87 C </line>
<line>ATOM 4951 CA TYR C 185 75.705 72.979 61.006 1.00 13.50 C </line>
</atom-coordinate>
<distance-map>
<line> TYR PHE ARG ASN GLY ASP PHE LYS ALA LEU ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 15.38 12.22 12.88 10.66 12.56 10.87 7.61 5.40 5.30 3.79 </line>
<line>LEU CA 12.73 9.28 9.38 6.97 9.25 8.22 5.64 5.22 3.86 </line>
<line>ALA CA 13.06 9.41 9.19 7.07 8.34 7.28 5.55 3.83 </line>
<line>LYS CA 16.65 12.91 12.10 9.12 9.33 6.71 3.78 </line>
<line>PHE CA 16.23 12.42 10.69 7.10 6.77 3.76 </line>
<line>ASP CA 15.84 12.08 9.38 5.95 3.73 </line>
<line>GLY CA 13.26 9.77 6.42 3.82 </line>
<line>ASN CA 10.10 6.51 3.77 </line>
<line>ARG CA 6.90 3.85 </line>
<line>PHE CA 3.86 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ALA CA 494</line>
<line>LEU CA 516</line>
<line>ALA CA 410</line>
<line>LYS CA 356</line>
<line>PHE CA 330</line>
<line>ASP CA 251</line>
<line>GLY CA 263</line>
<line>ASN CA 368</line>
<line>ARG CA 377</line>
<line>PHE CA 458</line>
<line>TYR CA 413</line>
</n14>
</entryChain>
<parallel>
<x>-65.14700317382812</x>
<y>-7.379000186920166</y>
<z>-32.13600158691406</z>
</parallel>
<rotation>
<x>-0.597000002861023</x>
<y>-0.3100000023841858</y>
<z>0.7390000224113464</z>
<x>-0.48899999260902405</x>
<y>0.871999979019165</y>
<z>-0.028999999165534973</z>
<x>-0.6359999775886536</x>
<y>-0.3779999911785126</y>
<z>-0.6729999780654907</z>
</rotation>
<rmsd>1.5509190559387207</rmsd>
<dmax>2.737380027770996</dmax>
</indel>