NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1AD0C-2V7NF
confEVID 1AD0C-2V7NF
pdbIDA 1AD0
pdbIDB 2V7N
pdbChainA C
pdbChainB F
identity 0.238900005817413
indelSize 3
alignment <alignment>
<seq1>QTVLTQSPSSLSVSVGDRVTITCRASSSV---TYIHWYQQKPGLAPKSLIYATS-----NLASGVPSRFSGSGS--GTDYTFTISSLQPEDIATYYCQHWSSKPP---TFGQGTKVEVKR-TVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSK-DSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC</seq1>
<seq2>-VQLVESGG-GLVQPGGSLRLSCAASGFTFRNSAMHWVRQAPGKGLEWVSSIWYSGSNTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARFAGGWGAYDVWGQGTLVTVSSASTKGPSVFPLAPG------GTAALGCLVKDYFPEPVTVSWN--SGALTSGVH--TFPAVLQSSGLYSLSSVVTVPSSSLGTQ-TYICNVNHKPSN--TKVDKKVEP-</seq2>
<ss_1> EEEEE EEEE EEEEEE --- EEEEE EEEEE -----EEE EEEEEEE--EEEEEEEE EEEEEE --- EEEEEE - EEEEE HHHH EEEEEEEEEEEEE EEEEEEEE EEEEE - EEEEEEEEEEEHHGGG EEEEEEEEE EEEEEE </ss_1>
<ss_2>- EEEEE - EEEEEEEEEEEGGG EEEEEEEE EEEEEEEE EEE EEEEEEE EEEEEEE GGG EEEEEEEE EEEE EEEEE ------EEEEEEEEEEEEE EEEEE-- EEE-- EEE EEEEEEEEEEEE - EEEEEEE --EEEEEE -</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2V7N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2V7NF</entryIDChain>
<sequence>TSGVH--TFPAV</sequence>
<secondary-structure> EEE-- E</secondary-structure>
<atom-coordinate>
<line>ATOM 9276 CA THR F 196 28.627 -18.675 -9.592 1.00 29.85 C </line>
<line>ATOM 9283 CA SER F 197 29.878 -19.956 -12.927 1.00 31.18 C </line>
<line>ATOM 9289 CA GLY F 198 27.344 -19.819 -15.801 1.00 26.01 C </line>
<line>ATOM 9293 CA VAL F 199 25.355 -17.241 -13.862 1.00 25.73 C </line>
<line>ATOM 9300 CA HIS F 200 24.181 -14.026 -15.431 1.00 23.67 C </line>
<line>ATOM 9310 CA THR F 201 22.363 -11.509 -13.274 1.00 22.55 C </line>
<line>ATOM 9317 CA PHE F 202 21.000 -8.865 -15.626 1.00 14.97 C </line>
<line>ATOM 9328 CA PRO F 203 21.081 -5.127 -14.971 1.00 22.42 C </line>
<line>ATOM 9335 CA ALA F 204 17.781 -3.904 -13.536 1.00 24.54 C </line>
<line>ATOM 9340 CA VAL F 205 15.083 -2.572 -15.793 1.00 17.98 C </line>
</atom-coordinate>
<distance-map>
<line> VAL ALA PRO PHE THR HIS VAL GLY SER THR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 21.94 18.74 16.41 13.81 10.21 8.69 5.57 6.44 3.79 </line>
<line>SER CA 23.01 20.11 17.36 14.46 11.31 8.60 5.36 3.83 </line>
<line>GLY CA 21.16 18.70 15.99 12.66 10.01 6.61 3.79 </line>
<line>VAL CA 18.01 15.34 12.89 9.60 6.49 3.77 </line>
<line>HIS CA 14.63 12.12 9.43 6.07 3.78 </line>
<line>THR CA 11.80 8.88 6.73 3.79 </line>
<line>PHE CA 8.64 6.27 3.80 </line>
<line>PRO CA 6.57 3.80 </line>
<line>ALA CA 3.76 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>THR CA 206</line>
<line>SER CA 185</line>
<line>GLY CA 209</line>
<line>VAL CA 271</line>
<line>HIS CA 241</line>
<line>THR CA 292</line>
<line>PHE CA 250</line>
<line>PRO CA 226</line>
<line>ALA CA 298</line>
<line>VAL CA 253</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AD0</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1AD0C</entryIDChain>
<sequence>SGNSQESVTEQD</sequence>
<secondary-structure> EEEEE </secondary-structure>
<atom-coordinate>
<line>ATOM 4492 CA SER C 155 6.577 0.746 16.499 1.00 34.38 C </line>
<line>ATOM 4498 CA GLY C 156 4.828 -2.632 16.536 1.00 27.28 C </line>
<line>ATOM 4502 CA ASN C 157 1.670 -1.452 14.807 1.00 23.39 C </line>
<line>ATOM 4510 CA SER C 158 2.768 -2.155 11.229 1.00 21.39 C </line>
<line>ATOM 4516 CA GLN C 159 3.636 -5.118 8.976 1.00 17.45 C </line>
<line>ATOM 4525 CA GLU C 160 6.047 -5.347 6.048 1.00 15.38 C </line>
<line>ATOM 4534 CA SER C 161 6.056 -7.598 2.979 1.00 12.90 C </line>
<line>ATOM 4540 CA VAL C 162 8.846 -7.722 0.413 1.00 10.82 C </line>
<line>ATOM 4547 CA THR C 163 8.752 -9.339 -3.039 1.00 14.50 C </line>
<line>ATOM 4554 CA GLU C 164 11.177 -11.796 -4.598 1.00 16.59 C </line>
<line>ATOM 4563 CA GLN C 165 13.868 -10.254 -6.832 1.00 8.72 C </line>
<line>ATOM 4572 CA ASP C 166 12.543 -9.358 -10.293 1.00 8.69 C </line>
</atom-coordinate>
<distance-map>
<line> ASP GLN GLU THR VAL SER GLU GLN SER ASN GLY SER </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 29.25 26.80 24.97 22.09 18.32 15.90 12.11 9.98 7.12 5.64 3.80 </line>
<line>GLY CA 28.72 26.19 23.89 21.06 17.38 14.49 10.90 8.05 5.71 3.79 </line>
<line>ASN CA 28.47 26.35 23.96 20.76 17.26 14.03 10.54 7.16 3.81 </line>
<line>SER CA 24.71 22.69 20.35 17.06 13.60 10.42 6.91 3.82 </line>
<line>GLN CA 21.65 19.52 16.90 13.72 10.36 6.93 3.80 </line>
<line>GLU CA 18.04 15.85 13.46 10.29 6.73 3.81 </line>
<line>SER CA 14.88 12.82 10.06 6.82 3.79 </line>
<line>VAL CA 11.44 9.17 6.87 3.81 </line>
<line>THR CA 8.18 6.43 3.79 </line>
<line>GLU CA 6.34 3.82 </line>
<line>GLN CA 3.81 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>SER CA 204</line>
<line>GLY CA 160</line>
<line>ASN CA 226</line>
<line>SER CA 275</line>
<line>GLN CA 218</line>
<line>GLU CA 263</line>
<line>SER CA 225</line>
<line>VAL CA 283</line>
<line>THR CA 283</line>
<line>GLU CA 322</line>
<line>GLN CA 375</line>
<line>ASP CA 314</line>
</n14>
</entryChain>
<parallel>
<x>18.94700050354004</x>
<y>-9.468999862670898</y>
<z>-21.538000106811523</z>
</parallel>
<rotation>
<x>0.24500000476837158</x>
<y>0.5820000171661377</y>
<z>0.7749999761581421</z>
<x>-0.4350000023841858</x>
<y>-0.6489999890327454</y>
<z>0.6240000128746033</z>
<x>0.8669999837875366</x>
<y>-0.49000000953674316</y>
<z>0.09399999678134918</z>
</rotation>
<rmsd>3.7732269763946533</rmsd>
<dmax>4.904972076416016</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2V7N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2V7NF</entryIDChain>
<sequence>SLGTQ-TYICN</sequence>
<secondary-structure> - EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 9473 CA SER F 224 21.381 -31.923 -12.664 1.00 44.52 C </line>
<line>ATOM 9479 CA LEU F 225 17.641 -31.436 -13.011 1.00 40.90 C </line>
<line>ATOM 9487 CA GLY F 226 16.103 -33.826 -10.507 1.00 46.78 C </line>
<line>ATOM 9491 CA THR F 227 19.480 -34.145 -8.789 1.00 52.85 C </line>
<line>ATOM 9498 CA GLN F 228 20.761 -30.684 -7.946 1.00 38.80 C </line>
<line>ATOM 9507 CA THR F 229 18.873 -28.180 -5.832 1.00 38.74 C </line>
<line>ATOM 9514 CA TYR F 230 18.806 -24.694 -7.358 1.00 31.36 C </line>
<line>ATOM 9526 CA ILE F 231 17.906 -21.748 -5.159 1.00 29.12 C </line>
<line>ATOM 9534 CA CYS F 232 18.135 -18.047 -5.883 1.00 22.83 C </line>
<line>ATOM 9540 CA ASN F 233 18.864 -15.869 -2.856 1.00 27.02 C </line>
</atom-coordinate>
<distance-map>
<line> ASN CYS ILE TYR THR GLN THR GLY LEU SER </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 18.98 15.78 13.11 9.33 8.18 4.92 4.85 6.01 3.79 </line>
<line>LEU CA 18.63 15.18 12.47 8.88 7.98 6.00 5.34 3.79 </line>
<line>GLY CA 19.71 16.57 13.33 10.03 7.84 6.17 3.80 </line>
<line>THR CA 19.22 16.41 13.01 9.58 6.69 3.79 </line>
<line>GLN CA 15.78 13.07 9.79 6.33 3.78 </line>
<line>THR CA 12.67 10.16 6.54 3.81 </line>
<line>TYR CA 9.91 6.84 3.78 </line>
<line>ILE CA 6.39 3.78 </line>
<line>CYS CA 3.80 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>SER CA 197</line>
<line>LEU CA 201</line>
<line>GLY CA 155</line>
<line>THR CA 144</line>
<line>GLN CA 215</line>
<line>THR CA 255</line>
<line>TYR CA 337</line>
<line>ILE CA 348</line>
<line>CYS CA 384</line>
<line>ASN CA 346</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AD0</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1AD0C</entryIDChain>
<sequence>DYEKHKVYACE</sequence>
<secondary-structure>HGGG EEEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 4704 CA ASP C 184 -7.352 6.490 16.863 1.00 24.83 C </line>
<line>ATOM 4712 CA TYR C 185 -6.776 7.512 13.239 1.00 18.42 C </line>
<line>ATOM 4724 CA GLU C 186 -8.966 10.595 13.599 1.00 21.13 C </line>
<line>ATOM 4733 CA LYS C 187 -7.136 11.984 16.607 1.00 13.16 C </line>
<line>ATOM 4742 CA HIS C 188 -3.980 12.730 14.613 1.00 14.23 C </line>
<line>ATOM 4752 CA LYS C 189 -3.145 14.672 11.439 1.00 20.51 C </line>
<line>ATOM 4761 CA VAL C 190 0.275 14.100 9.843 1.00 15.23 C </line>
<line>ATOM 4768 CA TYR C 191 0.849 10.529 8.645 1.00 14.96 C </line>
<line>ATOM 4780 CA ALA C 192 4.401 10.074 7.428 1.00 10.86 C </line>
<line>ATOM 4785 CA CYS C 193 6.562 7.265 6.040 1.00 12.76 C </line>
<line>ATOM 4791 CA GLU C 194 10.341 7.717 6.475 1.00 16.99 C </line>
</atom-coordinate>
<distance-map>
<line> GLU CYS ALA TYR VAL LYS HIS LYS GLU TYR ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 20.55 17.64 15.49 12.29 12.86 10.68 7.44 5.50 5.49 3.81 </line>
<line>TYR CA 18.41 15.16 12.86 9.40 10.23 8.23 6.08 5.61 3.80 </line>
<line>GLU CA 20.78 17.59 14.73 10.99 10.57 7.43 5.52 3.79 </line>
<line>LYS CA 20.65 17.93 14.87 11.37 10.25 7.06 3.81 </line>
<line>HIS CA 17.22 14.65 11.35 7.99 6.54 3.81 </line>
<line>LYS CA 15.97 13.35 9.70 6.40 3.82 </line>
<line>VAL CA 12.39 10.04 6.25 3.81 </line>
<line>TYR CA 10.13 7.08 3.78 </line>
<line>ALA CA 6.46 3.81 </line>
<line>CYS CA 3.83 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>ASP CA 234</line>
<line>TYR CA 318</line>
<line>GLU CA 265</line>
<line>LYS CA 197</line>
<line>HIS CA 259</line>
<line>LYS CA 260</line>
<line>VAL CA 296</line>
<line>TYR CA 392</line>
<line>ALA CA 387</line>
<line>CYS CA 409</line>
<line>GLU CA 357</line>
</n14>
</entryChain>
<parallel>
<x>22.454999923706055</x>
<y>-40.08100128173828</y>
<z>-21.51300048828125</z>
</parallel>
<rotation>
<x>0.5210000276565552</x>
<y>0.7620000243186951</y>
<z>0.3840000033378601</z>
<x>-0.09600000083446503</x>
<y>-0.39500001072883606</y>
<z>0.9139999747276306</z>
<x>0.8479999899864197</x>
<y>-0.5130000114440918</y>
<z>-0.13300000131130219</z>
</rotation>
<rmsd>1.6165070533752441</rmsd>
<dmax>2.6602320671081543</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2V7N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2V7NF</entryIDChain>
<sequence>HKPSN--TKVDK</sequence>
<secondary-structure>E --EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 9563 CA HIS F 236 16.823 -6.035 -0.971 1.00 30.41 C </line>
<line>ATOM 9573 CA LYS F 237 18.443 -4.227 1.943 1.00 34.64 C </line>
<line>ATOM 9582 CA PRO F 238 16.297 -1.049 1.487 1.00 32.98 C </line>
<line>ATOM 9589 CA SER F 239 13.141 -2.964 2.402 1.00 28.41 C </line>
<line>ATOM 9595 CA ASN F 240 14.604 -5.580 4.699 1.00 46.60 C </line>
<line>ATOM 9603 CA THR F 241 13.902 -8.152 1.987 1.00 43.84 C </line>
<line>ATOM 9610 CA LYS F 242 15.351 -11.654 1.970 1.00 47.22 C </line>
<line>ATOM 9619 CA VAL F 243 13.690 -14.269 -0.197 1.00 36.75 C </line>
<line>ATOM 9626 CA ASP F 244 14.959 -17.766 -0.956 1.00 29.49 C </line>
<line>ATOM 9634 CA LYS F 245 13.346 -19.282 -4.030 1.00 24.10 C </line>
</atom-coordinate>
<distance-map>
<line> LYS ASP VAL LYS THR ASN SER PRO LYS HIS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>HIS CA 14.03 11.88 8.84 6.51 4.67 6.11 5.86 5.58 3.79 </line>
<line>LYS CA 16.98 14.28 11.31 8.04 6.00 4.92 5.47 3.86 </line>
<line>PRO CA 19.28 16.95 13.58 10.66 7.51 5.81 3.80 </line>
<line>SER CA 17.54 15.29 11.61 8.98 5.26 3.78 </line>
<line>ASN CA 16.29 13.44 10.02 6.70 3.80 </line>
<line>THR CA 12.66 10.11 6.50 3.79 </line>
<line>LYS CA 9.91 6.79 3.78 </line>
<line>VAL CA 6.32 3.80 </line>
<line>ASP CA 3.79 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>HIS CA 288</line>
<line>LYS CA 202</line>
<line>PRO CA 222</line>
<line>SER CA 218</line>
<line>ASN CA 178</line>
<line>THR CA 237</line>
<line>LYS CA 241</line>
<line>VAL CA 292</line>
<line>ASP CA 270</line>
<line>LYS CA 309</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AD0</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1AD0C</entryIDChain>
<sequence>HQGLSSPVTKSF</sequence>
<secondary-structure>E EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 4814 CA HIS C 197 18.215 3.042 2.029 1.00 12.64 C </line>
<line>ATOM 4824 CA GLN C 198 21.736 2.875 0.637 1.00 20.06 C </line>
<line>ATOM 4833 CA GLY C 199 20.645 4.618 -2.557 1.00 22.25 C </line>
<line>ATOM 4837 CA LEU C 200 19.376 7.661 -0.636 1.00 21.18 C </line>
<line>ATOM 4845 CA SER C 201 21.748 10.439 0.561 1.00 27.69 C </line>
<line>ATOM 4851 CA SER C 202 19.244 11.266 3.277 1.00 20.98 C </line>
<line>ATOM 4857 CA PRO C 203 16.101 9.424 4.426 1.00 17.28 C </line>
<line>ATOM 4864 CA VAL C 204 13.098 10.132 2.205 1.00 15.15 C </line>
<line>ATOM 4871 CA THR C 205 9.778 11.082 3.823 1.00 23.78 C </line>
<line>ATOM 4878 CA LYS C 206 6.381 10.832 2.141 1.00 12.12 C </line>
<line>ATOM 4887 CA SER C 207 3.317 12.100 3.989 1.00 12.08 C </line>
<line>ATOM 4893 CA PHE C 208 -0.206 13.453 3.998 1.00 15.85 C </line>
</atom-coordinate>
<distance-map>
<line> PHE SER LYS THR VAL PRO SER SER LEU GLY GLN HIS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>HIS CA 21.25 17.55 14.17 11.79 8.75 7.14 8.38 8.33 5.46 5.42 3.79 </line>
<line>GLN CA 24.59 20.87 17.36 14.85 11.39 9.43 9.14 7.56 5.49 3.80 </line>
<line>GLY CA 23.58 19.98 16.25 14.16 10.49 9.62 8.96 6.69 3.82 </line>
<line>LEU CA 20.94 17.29 13.66 11.12 7.32 6.28 5.32 3.84 </line>
<line>SER CA 22.42 18.82 15.45 12.42 8.81 6.92 3.79 </line>
<line>SER CA 19.59 15.96 12.92 9.48 6.34 3.82 </line>
<line>PRO CA 16.80 13.07 10.08 6.56 3.80 </line>
<line>VAL CA 13.83 10.14 6.75 3.81 </line>
<line>THR CA 10.26 6.54 3.80 </line>
<line>LYS CA 7.33 3.80 </line>
<line>SER CA 3.77 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>HIS CA 290</line>
<line>GLN CA 230</line>
<line>GLY CA 232</line>
<line>LEU CA 220</line>
<line>SER CA 133</line>
<line>SER CA 153</line>
<line>PRO CA 222</line>
<line>VAL CA 267</line>
<line>THR CA 309</line>
<line>LYS CA 312</line>
<line>SER CA 329</line>
<line>PHE CA 290</line>
</n14>
</entryChain>
<parallel>
<x>-1.090999960899353</x>
<y>-14.326000213623047</y>
<z>0.6399999856948853</z>
</parallel>
<rotation>
<x>0.21199999749660492</x>
<y>0.7990000247955322</y>
<z>0.5630000233650208</z>
<x>-0.6019999980926514</x>
<y>-0.34599998593330383</y>
<z>0.718999981880188</z>
<x>0.7689999938011169</x>
<y>-0.492000013589859</y>
<z>0.40799999237060547</z>
</rotation>
<rmsd>2.8214609622955322</rmsd>
<dmax>3.7182159423828125</dmax>
</indel>