NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1ADIA-1DJ3B
confEVID 1ADIA-1DJ3B
pdbIDA 1ADI
pdbIDB 1DJ3
pdbChainA A
pdbChainB B
identity 0.441300004720688
indelSize 2
alignment <alignment>
<seq1>-------GNNVVVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVI-NGEKTVLHLIPSGILRENVTSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKARGAKAIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAEKLKEVMEYHNFQLVNYYKAEAVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDFVMFEGAQGTLLDIDHGTYPYVTSSNTTAGGVATGSGLGPRYVDYVLGILKAYSTRVGAGPFPTELFDETGEFLCKQGNEFGATTGRRRRTGWLDTVAVRRAVQLNSLSGFCLTKLDVLDGLKEVKLCVAYRMPDGREVTTTPLAADDWKGVEPIYETMPGWSESTFGVKDRSGLPQAALNYIKRIEELTGVPIDIISTGPDRTETMILRDPFDA</seq1>
<seq2>ADRVSSLSNVSGVLGSQWGDEGKGKLVDVLAPRFDIVARCQGGANAGHTIYNSEGKKFALHLVPSGILHEGTLCVVGNGAVIHVPGFFGEIDGLQSNGVSCDGRILVSDRAHLLFDLHQTVDGLREAELANSFIGTTKRGIGPCYSSKVTRNGLRVCDLRHMDTFGDKLDVLFEDAAARF-EGFKYSKGMLKEEVERYKKFAERLEPFIADTVHVLNESIRQKKKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVIGDLIGVVKAYTTRVGSGPFPTELLGEEGDVLRKAGMEFGTTTGRPRRCGWLDIVALKYCCDINGFSSLNLTKLDVLSGLPEIKLGVSYNQMDGEKLQSFPGDLDTLEQVQVNYEVLPGWDSDISSVRSYSELPQAARRYVERIEELAGVPVHYIGVGPGRDALIYK------</seq2>
<ss_1>------- EEEEEE HHHHHHH EEEE EEEEE- EEEEE EEEE HHHHHHHHHHH HHHHEE HHHHHHHHHHH HHHHHHHHH GGGG HHHHHHHHHHHHHHHHHHHH HHHHHHHHH HHHHGGG HHHHHHHHHH EEEE GGG GGHHHHHH EEEEEE EEE HHHHHHHHH EEEEEE HHHHHHH EEEEE GGG EEEEEEEEEEE EEE EEEEEEE HHHHHHHHHHHH EEE EEE </ss_1>
<ss_2> EEEEEE HHHHHHHHGGG EEEE EEE EEEEE GGG EEEE EE HHHHHHHHHHHH EE EE HHHHHHHHHHHHH HHHHHHHHH GGGGG HHHHHHHHHHHHHHHHHH - HHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHH EEEE GGG HHHHH HHHH EEEEE EEE HHHHHHHHH EEEEE HHHHHHHHHH EEEEE GGGG EEE HHHGGG EEE HHHHHHHHHHHHH EEE EEE ------</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1ADI</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1ADIA</entryIDChain>
<sequence>HTLVI-NGEKT</sequence>
<secondary-structure>EEEEE- EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 395 CA HIS A 41 33.893 60.394 -18.688 1.00 34.87 C </line>
<line>ATOM 407 CA THR A 42 36.332 63.308 -18.982 1.00 40.53 C </line>
<line>ATOM 416 CA LEU A 43 39.671 63.344 -17.174 1.00 45.45 C </line>
<line>ATOM 425 CA VAL A 44 42.775 65.413 -16.533 1.00 45.81 C </line>
<line>ATOM 433 CA ILE A 45 45.884 63.218 -16.211 1.00 46.79 C </line>
<line>ATOM 442 CA ASN A 46 49.385 64.679 -15.932 1.00 50.87 C </line>
<line>ATOM 453 CA GLY A 47 48.384 68.000 -17.514 1.00 53.39 C </line>
<line>ATOM 458 CA GLU A 48 46.406 66.152 -20.189 1.00 54.91 C </line>
<line>ATOM 468 CA LYS A 49 42.605 66.219 -20.462 1.00 51.58 C </line>
<line>ATOM 481 CA THR A 50 41.580 62.836 -21.857 1.00 45.66 C </line>
</atom-coordinate>
<distance-map>
<line> THR LYS GLU GLY ASN ILE VAL LEU THR HIS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>HIS CA 8.67 10.63 13.86 16.41 16.31 12.57 10.43 6.66 3.81 </line>
<line>THR CA 6.00 7.07 10.54 13.02 13.47 9.95 7.21 3.80 </line>
<line>LEU CA 5.08 5.26 7.90 9.88 9.88 6.29 3.79 </line>
<line>VAL CA 6.03 4.01 5.21 6.25 6.68 3.82 </line>
<line>ILE CA 7.11 6.15 4.97 5.55 3.80 </line>
<line>ASN CA 9.97 8.30 5.40 3.81 </line>
<line>GLY CA 9.58 6.73 3.81 </line>
<line>GLU CA 6.09 3.81 </line>
<line>LYS CA 3.80 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>HIS CA 489</line>
<line>THR CA 394</line>
<line>LEU CA 374</line>
<line>VAL CA 274</line>
<line>ILE CA 284</line>
<line>ASN CA 177</line>
<line>GLY CA 131</line>
<line>GLU CA 180</line>
<line>LYS CA 230</line>
<line>THR CA 321</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1DJ3</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1DJ3B</entryIDChain>
<sequence>HTIYNSEGKKF</sequence>
<secondary-structure>EEE EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 3626 CA HIS B 58 113.363 56.359 46.777 1.00 36.13 C </line>
<line>ATOM 3636 CA THR B 59 112.658 53.605 49.331 1.00 27.09 C </line>
<line>ATOM 3643 CA ILE B 60 109.431 51.610 48.882 1.00 27.80 C </line>
<line>ATOM 3651 CA TYR B 61 107.996 48.278 50.143 1.00 30.64 C </line>
<line>ATOM 3663 CA ASN B 62 105.728 45.803 48.350 1.00 41.47 C </line>
<line>ATOM 3671 CA SER B 63 102.879 43.649 49.702 1.00 46.95 C </line>
<line>ATOM 3677 CA GLU B 64 105.172 41.084 51.372 1.00 48.80 C </line>
<line>ATOM 3686 CA GLY B 65 107.163 43.886 52.986 1.00 34.35 C </line>
<line>ATOM 3690 CA LYS B 66 110.209 43.587 50.719 1.00 39.09 C </line>
<line>ATOM 3699 CA LYS B 67 112.522 46.614 50.717 1.00 31.76 C </line>
<line>ATOM 3708 CA PHE B 68 113.306 48.342 47.406 1.00 36.60 C </line>
</atom-coordinate>
<distance-map>
<line> PHE LYS LYS GLY GLU SER ASN TYR ILE THR HIS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>HIS CA 8.04 10.54 13.73 15.25 17.93 16.73 13.12 10.27 6.51 3.82 </line>
<line>THR CA 5.64 7.13 10.41 11.75 14.73 13.96 10.48 7.13 3.82 </line>
<line>ILE CA 5.28 6.15 8.27 9.04 11.62 10.34 6.91 3.84 </line>
<line>TYR CA 5.97 4.86 5.22 5.30 7.83 6.91 3.81 </line>
<line>ASN CA 8.05 7.24 5.53 5.22 5.63 3.82 </line>
<line>SER CA 11.66 10.14 7.40 5.40 3.82 </line>
<line>GLU CA 11.60 9.22 5.66 3.80 </line>
<line>GLY CA 9.42 6.43 3.81 </line>
<line>LYS CA 6.57 3.81 </line>
<line>LYS CA 3.82 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>HIS CA 422</line>
<line>THR CA 405</line>
<line>ILE CA 396</line>
<line>TYR CA 302</line>
<line>ASN CA 279</line>
<line>SER CA 215</line>
<line>GLU CA 146</line>
<line>GLY CA 184</line>
<line>LYS CA 208</line>
<line>LYS CA 252</line>
<line>PHE CA 343</line>
</n14>
</entryChain>
<parallel>
<x>-66.1240005493164</x>
<y>16.28700065612793</y>
<z>-67.4729995727539</z>
</parallel>
<rotation>
<x>-0.36399999260902405</x>
<y>0.06599999964237213</y>
<z>-0.9290000200271606</z>
<x>-0.9300000071525574</x>
<y>-0.0729999989271164</y>
<z>0.35899999737739563</z>
<x>-0.04399999976158142</x>
<y>0.9950000047683716</y>
<z>0.08799999952316284</z>
</rotation>
<rmsd>1.0058109760284424</rmsd>
<dmax>1.9692059755325317</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1DJ3</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1DJ3B</entryIDChain>
<sequence>AAARF-EGFKY</sequence>
<secondary-structure>HHHH - </secondary-structure>
<atom-coordinate>
<line>ATOM 4599 CA ALA B 186 138.261 68.553 31.649 1.00 65.96 C </line>
<line>ATOM 4604 CA ALA B 187 141.981 67.945 31.085 1.00 69.59 C </line>
<line>ATOM 4609 CA ALA B 188 142.625 71.614 30.298 1.00 63.97 C </line>
<line>ATOM 4614 CA ARG B 189 140.959 72.531 33.587 1.00 63.28 C </line>
<line>ATOM 4625 CA PHE B 190 142.367 70.070 36.133 1.00 85.81 C </line>
<line>ATOM 4636 CA GLU B 191 145.988 68.911 36.039 1.00 92.18 C </line>
<line>ATOM 4645 CA GLY B 192 144.691 65.834 37.845 1.00 95.06 C </line>
<line>ATOM 4649 CA PHE B 193 143.395 64.651 34.468 1.00 94.86 C </line>
<line>ATOM 4660 CA LYS B 194 145.549 63.630 31.495 1.00100.00 C </line>
<line>ATOM 4669 CA TYR B 195 143.143 61.911 29.086 1.00 95.67 C </line>
</atom-coordinate>
<distance-map>
<line> TYR LYS PHE GLY GLU PHE ARG ALA ALA ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 8.63 8.80 7.04 9.33 8.89 6.27 5.18 5.50 3.81 </line>
<line>ALA CA 6.46 5.61 4.93 7.58 6.44 5.49 5.32 3.81 </line>
<line>ALA CA 9.79 8.59 8.15 9.73 7.18 6.04 3.80 </line>
<line>ARG CA 11.74 10.23 8.29 8.77 6.66 3.81 </line>
<line>PHE CA 10.81 8.55 5.76 5.13 3.80 </line>
<line>GLU CA 10.27 6.98 5.23 3.80 </line>
<line>GLY CA 9.72 6.78 3.81 </line>
<line>PHE CA 6.04 3.81 </line>
<line>LYS CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ALA CA 325</line>
<line>ALA CA 251</line>
<line>ALA CA 184</line>
<line>ARG CA 220</line>
<line>PHE CA 219</line>
<line>GLU CA 169</line>
<line>GLY CA 195</line>
<line>PHE CA 245</line>
<line>LYS CA 196</line>
<line>TYR CA 252</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1ADI</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1ADIA</entryIDChain>
<sequence>HNFQLVNYYKA</sequence>
<secondary-structure>HHHHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 1598 CA HIS A 168 26.436 40.218 -42.778 1.00 21.07 C </line>
<line>ATOM 1610 CA ASN A 169 28.203 40.596 -46.091 1.00 24.91 C </line>
<line>ATOM 1621 CA PHE A 170 25.236 39.188 -47.920 1.00 21.59 C </line>
<line>ATOM 1633 CA GLN A 171 23.226 41.877 -46.163 1.00 26.12 C </line>
<line>ATOM 1645 CA LEU A 172 25.668 44.660 -47.000 1.00 27.01 C </line>
<line>ATOM 1654 CA VAL A 173 26.380 44.197 -50.689 1.00 26.89 C </line>
<line>ATOM 1662 CA ASN A 174 22.932 42.913 -51.713 1.00 26.04 C </line>
<line>ATOM 1673 CA TYR A 175 20.548 45.053 -49.625 1.00 21.86 C </line>
<line>ATOM 1687 CA TYR A 176 22.517 48.218 -48.804 1.00 28.33 C </line>
<line>ATOM 1701 CA LYS A 177 24.924 48.218 -51.726 1.00 31.36 C </line>
<line>ATOM 1714 CA ALA A 178 27.989 48.829 -49.608 1.00 32.01 C </line>
</atom-coordinate>
<distance-map>
<line> ALA LYS TYR TYR ASN VAL LEU GLN PHE ASN HIS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>HIS CA 11.10 12.10 10.76 10.24 9.97 8.86 6.18 4.95 5.38 3.77 </line>
<line>ASN CA 8.96 10.03 9.89 9.54 8.05 6.12 4.88 5.14 3.76 </line>
<line>PHE CA 10.17 9.80 9.47 7.70 5.79 5.84 5.57 3.79 </line>
<line>GLN CA 9.10 8.60 6.91 5.41 5.65 5.98 3.80 </line>
<line>LEU CA 5.44 5.96 5.08 5.77 5.72 3.79 </line>
<line>VAL CA 5.02 4.40 5.89 5.99 3.82 </line>
<line>ASN CA 8.06 5.67 6.06 3.82 </line>
<line>TYR CA 8.34 5.79 3.82 </line>
<line>TYR CA 5.56 3.79 </line>
<line>LYS CA 3.78 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>HIS CA 453</line>
<line>ASN CA 377</line>
<line>PHE CA 294</line>
<line>GLN CA 333</line>
<line>LEU CA 358</line>
<line>VAL CA 260</line>
<line>ASN CA 214</line>
<line>TYR CA 244</line>
<line>TYR CA 282</line>
<line>LYS CA 242</line>
<line>ALA CA 271</line>
</n14>
</entryChain>
<parallel>
<x>118.18800354003906</x>
<y>25.92300033569336</y>
<z>81.4000015258789</z>
</parallel>
<rotation>
<x>-0.003000000026077032</x>
<y>-0.3479999899864197</y>
<z>-0.9369999766349792</z>
<x>-0.0020000000949949026</x>
<y>-0.9369999766349792</y>
<z>0.3490000069141388</z>
<x>-1.0</x>
<y>0.003000000026077032</y>
<z>0.0020000000949949026</z>
</rotation>
<rmsd>2.6344709396362305</rmsd>
<dmax>4.504763126373291</dmax>
</indel>