NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1ADIB-1DJ3A
confEVID 1ADIB-1DJ3A
pdbIDA 1ADI
pdbIDB 1DJ3
pdbChainA B
pdbChainB A
identity 0.441300004720688
indelSize 2
alignment <alignment>
<seq1>-------GNNVVVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVIN-GEKTVLHLIPSGILRENVTSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKARGAKAIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAEKLKEVMEYHNFQLVNYYKAEAVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDFVMFEGAQGTLLDIDHGTYPYVTSSNTTAGGVATGSGLGPRYVDYVLGILKAYSTRVGAGPFPTELFDETGEFLCKQGNEFGATTGRRRRTGWLDTVAVRRAVQLNSLSGFCLTKLDVLDGLKEVKLCVAYRMPDGREVTTTPLAADDWKGVEPIYETMPGWSESTFGVKDRSGLPQAALNYIKRIEELTGVPIDIISTGPDRTETMILRDPFDA</seq1>
<seq2>ADRVSSLSNVSGVLGSQWGDEGKGKLVDVLAPRFDIVARCQGGANAGHTIYNSEGKKFALHLVPSGILHEGTLCVVGNGAVIHVPGFFGEIDGLQSNGVSCDGRILVSDRAHLLFDLHQTVDGLREAELANSFIGTTKRGIGPCYSSKVTRNGLRVCDLRHMDTFGDKLDVLFEDAAARF-EGFKYSKGMLKEEVERYKKFAERLEPFIADTVHVLNESIRQKKKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVIGDLIGVVKAYTTRVGSGPFPTELLGEEGDVLRKAGMEFGTTTGRPRRCGWLDIVALKYCCDINGFSSLNLTKLDVLSGLPEIKLGVSYNQMDGEKLQSFPGDLDTLEQVQVNYEVLPGWDSDISSVRSYSELPQAARRYVERIEELAGVPVHYIGVGPGRDALIYK------</seq2>
<ss_1>------- EEEEEE HHHHHHH EEEE EEEE - EEEEE GGG EEEE HHHHHHHHHH EE HHHHHHHHHHHH GGG HHHHHHHH GGGG HHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHH HHHHHHHHHH EEEE GGG GGHHHH EEEEEE EEE HHHHHHHH EEEEEEHHHHHHHHHH EEEEE GGG EEEEEEEEEEE EEE HHHH EEEEEEE HHHHHHHHHHHHH EEEE EEE </ss_1>
<ss_2> EEEEEE HHHHHHHHGGG EEEE EEE EEEEE GGG EEEE EE HHHHHHHHHHHH EE EE HHHHHHHHHHHHH HHHHHHHHH GGGGG HHHHHHHHHHHHHHHHHH - HHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHH EEEE GGG GGHHHHH HHHH EEEEE EEE HHHHHHHHH EEEEE HHHHHHHHHH EEEEE GGGG EEE HHHGGG EEE HHHHHHHHHHHHH EEE EEE ------</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1ADI</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1ADIB</entryIDChain>
<sequence>TLVIN-GEKTV</sequence>
<secondary-structure>EEE - EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 4575 CA THR B 42 -1.506 22.462 -18.393 1.00 27.84 C </line>
<line>ATOM 4584 CA LEU B 43 -4.698 22.990 -16.345 1.00 31.30 C </line>
<line>ATOM 4593 CA VAL B 44 -8.212 21.507 -16.032 1.00 35.97 C </line>
<line>ATOM 4601 CA ILE B 45 -11.341 23.534 -16.889 1.00 41.37 C </line>
<line>ATOM 4610 CA ASN B 46 -14.289 21.506 -15.541 1.00 45.86 C </line>
<line>ATOM 4621 CA GLY B 47 -12.620 18.157 -16.297 1.00 49.03 C </line>
<line>ATOM 4626 CA GLU B 48 -10.888 19.073 -19.571 1.00 51.53 C </line>
<line>ATOM 4636 CA LYS B 49 -7.109 19.468 -20.099 1.00 48.08 C </line>
<line>ATOM 4649 CA THR B 50 -6.289 22.845 -21.704 1.00 41.64 C </line>
<line>ATOM 4658 CA VAL B 51 -2.850 24.432 -22.121 1.00 33.54 C </line>
</atom-coordinate>
<distance-map>
<line> VAL THR LYS GLU GLY ASN ILE VAL LEU THR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 4.43 5.83 6.58 10.04 12.10 13.13 10.01 7.17 3.83 </line>
<line>LEU CA 6.23 5.59 5.68 8.00 9.28 9.74 6.69 3.83 </line>
<line>VAL CA 8.62 6.14 4.68 5.06 5.54 6.10 3.83 </line>
<line>ILE CA 10.01 7.01 6.69 5.22 5.56 3.82 </line>
<line>ASN CA 13.52 10.19 8.75 5.81 3.82 </line>
<line>GLY CA 12.99 9.55 6.82 3.82 </line>
<line>GLU CA 9.99 6.32 3.84 </line>
<line>LYS CA 6.85 3.83 </line>
<line>THR CA 3.81 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>THR CA 387</line>
<line>LEU CA 374</line>
<line>VAL CA 286</line>
<line>ILE CA 286</line>
<line>ASN CA 178</line>
<line>GLY CA 134</line>
<line>GLU CA 166</line>
<line>LYS CA 209</line>
<line>THR CA 302</line>
<line>VAL CA 373</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1DJ3</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1DJ3A</entryIDChain>
<sequence>TIYNSEGKKFA</sequence>
<secondary-structure>EE EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 345 CA THR A 59 112.211 95.944 18.604 1.00 33.13 C </line>
<line>ATOM 352 CA ILE A 60 109.049 98.000 19.226 1.00 27.86 C </line>
<line>ATOM 360 CA TYR A 61 107.605 101.356 18.033 1.00 28.94 C </line>
<line>ATOM 372 CA ASN A 62 105.485 103.883 19.928 1.00 41.83 C </line>
<line>ATOM 380 CA SER A 63 102.600 106.078 18.739 1.00 57.94 C </line>
<line>ATOM 386 CA GLU A 64 104.846 108.593 16.934 1.00 51.44 C </line>
<line>ATOM 395 CA GLY A 65 106.691 105.743 15.224 1.00 34.67 C </line>
<line>ATOM 399 CA LYS A 66 109.862 105.990 17.310 1.00 36.52 C </line>
<line>ATOM 408 CA LYS A 67 112.115 102.924 17.194 1.00 41.79 C </line>
<line>ATOM 417 CA PHE A 68 113.052 101.196 20.464 1.00 34.10 C </line>
<line>ATOM 428 CA ALA A 69 115.408 98.240 20.873 1.00 34.95 C </line>
</atom-coordinate>
<distance-map>
<line> ALA PHE LYS LYS GLY GLU SER ASN TYR ILE THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 4.54 5.63 7.12 10.40 11.74 14.73 13.97 10.49 7.13 3.82 </line>
<line>ILE CA 6.57 5.27 6.15 8.26 9.03 11.62 10.35 6.91 3.84 </line>
<line>TYR CA 8.87 5.97 4.85 5.20 5.29 7.82 6.92 3.80 </line>
<line>ASN CA 11.45 8.05 7.24 5.52 5.20 5.62 3.82 </line>
<line>SER CA 15.17 11.66 10.14 7.40 5.40 3.82 </line>
<line>GLU CA 15.31 11.60 9.22 5.66 3.80 </line>
<line>GLY CA 12.81 9.41 6.42 3.80 </line>
<line>LYS CA 10.17 6.57 3.81 </line>
<line>LYS CA 6.81 3.82 </line>
<line>PHE CA 3.80 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>THR CA 405</line>
<line>ILE CA 396</line>
<line>TYR CA 301</line>
<line>ASN CA 279</line>
<line>SER CA 214</line>
<line>GLU CA 146</line>
<line>GLY CA 184</line>
<line>LYS CA 208</line>
<line>LYS CA 252</line>
<line>PHE CA 343</line>
<line>ALA CA 364</line>
</n14>
</entryChain>
<parallel>
<x>-117.03500366210938</x>
<y>-81.40299987792969</y>
<z>-35.428001403808594</z>
</parallel>
<rotation>
<x>0.5249999761581421</x>
<y>-0.28999999165534973</y>
<z>-0.800000011920929</z>
<x>-0.843999981880188</x>
<y>-0.2980000078678131</y>
<z>-0.44600000977516174</z>
<x>-0.10899999737739563</x>
<y>0.9089999794960022</y>
<z>-0.4009999930858612</z>
</rotation>
<rmsd>0.6331089735031128</rmsd>
<dmax>1.230301022529602</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1DJ3</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1DJ3A</entryIDChain>
<sequence>AAARF-EGFKY</sequence>
<secondary-structure>HHHH - </secondary-structure>
<atom-coordinate>
<line>ATOM 1308 CA ALA A 186 138.481 80.571 34.879 1.00 65.49 C </line>
<line>ATOM 1313 CA ALA A 187 142.236 81.115 35.237 1.00 68.04 C </line>
<line>ATOM 1318 CA ALA A 188 142.861 77.442 36.008 1.00 77.53 C </line>
<line>ATOM 1323 CA ARG A 189 140.994 76.540 32.818 1.00 87.62 C </line>
<line>ATOM 1334 CA PHE A 190 142.298 78.966 30.183 1.00 94.23 C </line>
<line>ATOM 1345 CA GLU A 191 145.944 80.058 30.072 1.00 86.41 C </line>
<line>ATOM 1354 CA GLY A 192 144.598 83.149 28.324 1.00 95.34 C </line>
<line>ATOM 1358 CA PHE A 193 143.525 84.383 31.760 1.00 96.31 C </line>
<line>ATOM 1369 CA LYS A 194 145.862 85.369 34.598 1.00100.00 C </line>
<line>ATOM 1378 CA TYR A 195 143.628 87.136 37.141 1.00 99.51 C </line>
</atom-coordinate>
<distance-map>
<line> TYR LYS PHE GLY GLU PHE ARG ALA ALA ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 8.64 8.81 7.05 9.33 8.89 6.26 5.18 5.50 3.81 </line>
<line>ALA CA 6.47 5.63 4.94 7.58 6.45 5.49 5.32 3.80 </line>
<line>ALA CA 9.79 8.59 8.16 9.73 7.18 6.05 3.80 </line>
<line>ARG CA 11.74 10.24 8.31 8.77 6.66 3.81 </line>
<line>PHE CA 10.81 8.56 5.77 5.12 3.81 </line>
<line>GLU CA 10.27 6.98 5.24 3.80 </line>
<line>GLY CA 9.73 6.77 3.81 </line>
<line>PHE CA 6.05 3.81 </line>
<line>LYS CA 3.82 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ALA CA 324</line>
<line>ALA CA 251</line>
<line>ALA CA 184</line>
<line>ARG CA 220</line>
<line>PHE CA 219</line>
<line>GLU CA 169</line>
<line>GLY CA 195</line>
<line>PHE CA 245</line>
<line>LYS CA 196</line>
<line>TYR CA 252</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1ADI</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1ADIB</entryIDChain>
<sequence>HNFQLVNYYKA</sequence>
<secondary-structure>HHHHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 5776 CA HIS B 168 12.607 40.865 -43.845 1.00 23.39 C </line>
<line>ATOM 5788 CA ASN B 169 11.056 39.764 -47.168 1.00 20.27 C </line>
<line>ATOM 5799 CA PHE B 170 14.421 40.612 -48.689 1.00 20.44 C </line>
<line>ATOM 5811 CA GLN B 171 15.995 37.947 -46.446 1.00 20.35 C </line>
<line>ATOM 5823 CA LEU B 172 13.204 35.450 -46.813 1.00 14.49 C </line>
<line>ATOM 5832 CA VAL B 173 13.313 35.358 -50.590 1.00 15.09 C </line>
<line>ATOM 5840 CA ASN B 174 16.981 36.231 -51.262 1.00 21.21 C </line>
<line>ATOM 5851 CA TYR B 175 19.017 34.341 -48.616 1.00 23.28 C </line>
<line>ATOM 5865 CA TYR B 176 16.752 31.680 -47.233 1.00 19.50 C </line>
<line>ATOM 5879 CA LYS B 177 15.033 31.142 -50.616 1.00 21.95 C </line>
<line>ATOM 5892 CA ALA B 178 11.657 31.018 -48.836 1.00 20.10 C </line>
</atom-coordinate>
<distance-map>
<line> ALA LYS TYR TYR ASN VAL LEU GLN PHE ASN HIS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>HIS CA 11.08 12.09 10.63 10.32 9.78 8.74 6.20 5.17 5.18 3.83 </line>
<line>ASN CA 8.92 10.10 9.89 9.74 8.02 6.02 4.83 5.31 3.79 </line>
<line>PHE CA 9.99 9.68 9.35 7.78 5.69 5.70 5.63 3.82 </line>
<line>GLN CA 8.52 8.04 6.36 5.18 5.21 5.57 3.76 </line>
<line>LEU CA 5.11 6.03 5.19 6.19 5.89 3.78 </line>
<line>VAL CA 4.97 4.55 6.05 6.12 3.83 </line>
<line>ASN CA 7.84 5.49 6.08 3.84 </line>
<line>TYR CA 8.08 5.49 3.76 </line>
<line>TYR CA 5.38 3.83 </line>
<line>LYS CA 3.82 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>HIS CA 439</line>
<line>ASN CA 386</line>
<line>PHE CA 290</line>
<line>GLN CA 333</line>
<line>LEU CA 364</line>
<line>VAL CA 274</line>
<line>ASN CA 216</line>
<line>TYR CA 243</line>
<line>TYR CA 279</line>
<line>LYS CA 238</line>
<line>ALA CA 273</line>
</n14>
</entryChain>
<parallel>
<x>127.61299896240234</x>
<y>43.16699981689453</y>
<z>79.91899871826172</z>
</parallel>
<rotation>
<x>0.06300000101327896</x>
<y>-0.39899998903274536</y>
<z>-0.9150000214576721</z>
<x>-0.22100000083446503</x>
<y>-0.8989999890327454</y>
<z>0.37700000405311584</z>
<x>-0.9729999899864197</x>
<y>0.17900000512599945</y>
<z>-0.14499999582767487</z>
</rotation>
<rmsd>2.770076036453247</rmsd>
<dmax>4.818982124328613</dmax>
</indel>