NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1AFCF-1Z4SB
confEVID 1AFCF-1Z4SB
pdbIDA 1AFC
pdbIDB 1Z4S
pdbChainA F
pdbChainB B
identity 0.905499994754791
indelSize 2
alignment <alignment>
<seq1>--------------KPKLLYCSNGGYFLRILPDGTVDGTKDRSDQHIQLQLAAESIGEVYIKSTETGQFLAMDTDGLLYGSQTPNEECLFLERLEENHYNTYISKKHAEKHWFVGLKKNGRSKLGPRTHFGQKAILFLPLP-</seq1>
<seq2>HHHHHFNLPPGNYKKPKLLYCSN-GHFLRILPDGTVDGTRDRSDQHIQLQLSAESVGEVYIKST-TGQYLAMDTDGLLYGSQTPNEECLFLERLEENHYNTYISKKHAEKNWFVGLKKNGSCKRGPRTHYGQKAILFLPLPV</seq2>
<ss_1>-------------- EEEE EEEEEE EEEEEEE GGGEEEEE EEEEEEE EEEEE EEEEE GGGEEE EEEEE GGG EEEEE -</ss_1>
<ss_2> EEEE - EEEEE EEEEEEE EEE EEEEEEEE - EEEEE EEEEE EEEEEEE EEEEEEE GGG EEEEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1Z4S</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1Z4SB</entryIDChain>
<sequence>LYCSN-GHFLR</sequence>
<secondary-structure>EEE - EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1273 CA LEU B 14 44.288 21.449 30.253 1.00 35.20 C </line>
<line>ATOM 1281 CA TYR B 15 41.648 22.477 32.823 1.00 33.44 C </line>
<line>ATOM 1293 CA CYS B 16 39.031 19.786 33.673 1.00 36.95 C </line>
<line>ATOM 1299 CA SER B 17 35.364 20.634 34.489 1.00 43.62 C </line>
<line>ATOM 1305 CA ASN B 18 35.846 19.048 37.924 1.00 47.77 C </line>
<line>ATOM 1313 CA GLY B 20 38.211 21.876 38.860 1.00 44.53 C </line>
<line>ATOM 1317 CA HIS B 21 41.637 20.271 38.304 1.00 43.72 C </line>
<line>ATOM 1327 CA PHE B 22 44.586 20.690 35.939 1.00 40.92 C </line>
<line>ATOM 1338 CA LEU B 23 46.152 17.727 34.153 1.00 38.94 C </line>
<line>ATOM 1346 CA ARG B 24 49.649 16.961 35.435 1.00 43.83 C </line>
</atom-coordinate>
<distance-map>
<line> ARG LEU PHE HIS GLY ASN SER CYS TYR LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 8.70 5.70 5.74 8.56 10.54 11.66 9.91 6.49 3.83 </line>
<line>TYR CA 10.06 6.68 4.64 5.91 6.97 8.45 6.76 3.85 </line>
<line>CYS CA 11.13 7.43 6.07 5.34 5.65 5.36 3.85 </line>
<line>SER CA 14.78 11.18 9.34 7.35 5.36 3.81 </line>
<line>ASN CA 14.18 11.05 9.11 5.93 3.80 </line>
<line>GLY CA 12.91 10.12 7.11 3.82 </line>
<line>HIS CA 9.13 6.64 3.80 </line>
<line>PHE CA 6.31 3.80 </line>
<line>LEU CA 3.80 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>LEU CA 477</line>
<line>TYR CA 401</line>
<line>CYS CA 406</line>
<line>SER CA 318</line>
<line>ASN CA 270</line>
<line>GLY CA 275</line>
<line>HIS CA 336</line>
<line>PHE CA 406</line>
<line>LEU CA 488</line>
<line>ARG CA 435</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AFC</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>1AFCF</entryIDChain>
<sequence>LYCSNGGYFLR</sequence>
<secondary-structure>EEE EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 4951 CA LEU F 14 61.269 21.921 98.891 1.00 2.64 C </line>
<line>ATOM 4959 CA TYR F 15 63.435 24.534 97.244 1.00 4.20 C </line>
<line>ATOM 4971 CA CYS F 16 67.117 23.724 97.693 1.00 9.59 C </line>
<line>ATOM 4977 CA SER F 17 69.184 26.819 97.638 1.00 9.69 C </line>
<line>ATOM 4983 CA ASN F 18 71.921 24.866 95.826 1.00 6.90 C </line>
<line>ATOM 4991 CA GLY F 19 71.243 25.004 92.085 1.00 9.36 C </line>
<line>ATOM 4995 CA GLY F 20 67.719 26.253 92.767 1.00 8.15 C </line>
<line>ATOM 4999 CA TYR F 21 66.348 22.692 92.422 1.00 7.79 C </line>
<line>ATOM 5011 CA PHE F 22 63.239 21.174 93.805 1.00 4.47 C </line>
<line>ATOM 5022 CA LEU F 23 63.509 17.758 95.485 1.00 3.52 C </line>
<line>ATOM 5030 CA ARG F 24 62.003 15.024 93.286 1.00 6.90 C </line>
</atom-coordinate>
<distance-map>
<line> ARG LEU PHE TYR GLY GLY ASN SER CYS TYR LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 8.92 5.83 5.51 8.26 9.89 12.46 11.47 9.39 6.24 3.77 </line>
<line>TYR CA 10.40 7.00 4.81 5.93 6.43 9.37 8.61 6.20 3.80 </line>
<line>CYS CA 11.01 7.31 6.05 5.43 5.57 7.08 5.28 3.72 </line>
<line>SER CA 14.48 10.91 9.05 7.23 5.12 6.19 3.82 </line>
<line>ASN CA 14.20 11.02 9.65 6.88 5.38 3.80 </line>
<line>GLY CA 13.65 11.13 9.04 5.42 3.80 </line>
<line>GLY CA 12.61 9.86 6.85 3.83 </line>
<line>TYR CA 8.86 6.46 3.73 </line>
<line>PHE CA 6.29 3.82 </line>
<line>LEU CA 3.82 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>LEU CA 458</line>
<line>TYR CA 395</line>
<line>CYS CA 418</line>
<line>SER CA 328</line>
<line>ASN CA 301</line>
<line>GLY CA 256</line>
<line>GLY CA 281</line>
<line>TYR CA 353</line>
<line>PHE CA 413</line>
<line>LEU CA 518</line>
<line>ARG CA 455</line>
</n14>
</entryChain>
<parallel>
<x>-26.202999114990234</x>
<y>-3.2190001010894775</y>
<z>-60.50299835205078</z>
</parallel>
<rotation>
<x>-0.7329999804496765</x>
<y>-0.5669999718666077</y>
<z>0.375</z>
<x>-0.6050000190734863</x>
<y>0.7960000038146973</y>
<z>0.019999999552965164</z>
<x>-0.3100000023841858</x>
<y>-0.21199999749660492</y>
<z>-0.9269999861717224</z>
</rotation>
<rmsd>0.5184059739112854</rmsd>
<dmax>1.0525239706039429</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1Z4S</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1Z4SB</entryIDChain>
<sequence>YIKST-TGQYL</sequence>
<secondary-structure>EEE - EE</secondary-structure>
<atom-coordinate>
<line>ATOM 1583 CA TYR B 55 50.017 14.254 20.934 1.00 39.72 C </line>
<line>ATOM 1595 CA ILE B 56 50.175 15.770 24.414 1.00 41.37 C </line>
<line>ATOM 1603 CA LYS B 57 53.743 16.362 25.710 1.00 50.23 C </line>
<line>ATOM 1612 CA SER B 58 55.101 17.158 29.167 1.00 59.04 C </line>
<line>ATOM 1618 CA THR B 59 57.712 19.824 30.017 1.00 65.97 C </line>
<line>ATOM 1625 CA THR B 61 60.486 17.244 30.439 1.00 66.48 C </line>
<line>ATOM 1632 CA GLY B 62 59.361 15.506 27.259 1.00 62.76 C </line>
<line>ATOM 1636 CA GLN B 63 57.094 12.633 28.253 1.00 55.93 C </line>
<line>ATOM 1645 CA TYR B 64 54.149 11.539 26.079 1.00 47.47 C </line>
<line>ATOM 1657 CA LEU B 65 50.723 10.965 27.614 1.00 34.65 C </line>
</atom-coordinate>
<distance-map>
<line> LEU TYR GLN GLY THR THR SER LYS ILE TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 7.48 7.14 10.31 11.35 14.45 13.14 10.10 6.41 3.80 </line>
<line>ILE CA 5.80 6.04 8.51 9.62 12.03 10.23 6.98 3.84 </line>
<line>LYS CA 6.47 4.85 5.62 5.89 8.28 6.80 3.80 </line>
<line>SER CA 7.74 6.48 5.03 4.95 5.53 3.83 </line>
<line>THR CA 11.54 9.84 7.43 5.38 3.81 </line>
<line>THR CA 11.95 9.58 6.13 3.79 </line>
<line>GLY CA 9.77 6.66 3.79 </line>
<line>GLN CA 6.62 3.82 </line>
<line>TYR CA 3.80 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>TYR CA 409</line>
<line>ILE CA 470</line>
<line>LYS CA 395</line>
<line>SER CA 367</line>
<line>THR CA 283</line>
<line>THR CA 223</line>
<line>GLY CA 255</line>
<line>GLN CA 310</line>
<line>TYR CA 358</line>
<line>LEU CA 464</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AFC</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>1AFCF</entryIDChain>
<sequence>YIKSTETGQFL</sequence>
<secondary-structure>EEEE EE</secondary-structure>
<atom-coordinate>
<line>ATOM 5253 CA TYR F 55 58.545 12.074 106.885 1.00 15.13 C </line>
<line>ATOM 5265 CA ILE F 56 58.620 13.454 103.391 1.00 11.52 C </line>
<line>ATOM 5273 CA LYS F 57 55.773 11.541 101.892 1.00 13.47 C </line>
<line>ATOM 5282 CA SER F 58 55.246 11.979 98.115 1.00 12.84 C </line>
<line>ATOM 5288 CA THR F 59 51.734 13.119 97.065 1.00 13.63 C </line>
<line>ATOM 5295 CA GLU F 60 51.962 11.394 93.630 1.00 14.69 C </line>
<line>ATOM 5304 CA THR F 61 53.592 8.037 94.070 1.00 14.12 C </line>
<line>ATOM 5311 CA GLY F 62 52.857 7.964 97.780 1.00 13.91 C </line>
<line>ATOM 5315 CA GLN F 63 56.454 6.942 98.345 1.00 11.44 C </line>
<line>ATOM 5324 CA PHE F 64 58.610 7.935 101.260 1.00 10.29 C </line>
<line>ATOM 5335 CA LEU F 65 62.036 9.581 101.190 1.00 8.76 C </line>
</atom-coordinate>
<distance-map>
<line> LEU PHE GLN GLY THR GLU THR SER LYS ILE TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 7.13 6.98 10.18 11.50 14.32 14.82 12.00 9.37 5.74 3.76 </line>
<line>ILE CA 5.61 5.92 8.52 9.74 11.90 11.99 9.36 6.43 3.74 </line>
<line>LYS CA 6.60 4.63 5.85 6.18 8.84 9.10 6.49 3.84 </line>
<line>SER CA 7.83 6.13 5.18 4.68 5.89 5.59 3.84 </line>
<line>THR CA 11.65 9.58 7.88 5.32 6.18 3.85 </line>
<line>GLU CA 12.73 10.69 7.89 5.46 3.76 </line>
<line>THR CA 11.15 8.77 5.26 3.78 </line>
<line>GLY CA 9.92 6.72 3.78 </line>
<line>GLN CA 6.80 3.76 </line>
<line>PHE CA 3.80 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>TYR CA 394</line>
<line>ILE CA 474</line>
<line>LYS CA 385</line>
<line>SER CA 374</line>
<line>THR CA 268</line>
<line>GLU CA 243</line>
<line>THR CA 243</line>
<line>GLY CA 268</line>
<line>GLN CA 316</line>
<line>PHE CA 380</line>
<line>LEU CA 479</line>
</n14>
</entryChain>
<parallel>
<x>0.10899999737739563</x>
<y>5.454999923706055</y>
<z>-72.66899871826172</z>
</parallel>
<rotation>
<x>-0.6679999828338623</x>
<y>-0.6890000104904175</y>
<z>0.2800000011920929</z>
<x>-0.6650000214576721</x>
<y>0.722000002861023</y>
<z>0.18799999356269836</z>
<x>-0.3319999873638153</x>
<y>-0.05999999865889549</y>
<z>-0.9409999847412109</z>
</rotation>
<rmsd>0.9325900077819824</rmsd>
<dmax>1.7443939447402954</dmax>
</indel>