NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1AG1O-2JK2A
confEVID 1AG1O-2JK2A
pdbIDA 1AG1
pdbIDB 2JK2
pdbChainA O
pdbChainB A
identity 0.528199970722198
indelSize 3
alignment <alignment>
<seq1>SKPQPIAAANWKCNGSQQSLSELIDLFNSTSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNAIAK-SGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKVATPQQAQEAHALIRSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVGGASLKPEFVDIIKATQ</seq1>
<seq2>--RKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKL-DPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVK--DWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ</seq2>
<ss_1> EEEE HHHHHHHHHHHH EEEEE HHHHHHH EEEE - HHHH EEEE HHHHH HHHHHHHHHHHHH EEEEEE HHHHH HHHHHHHHHHHHGGG GGGGEEEEE HHHHHHHHHHHHHHHHH HHHH EEEE HHHHH EEEE GGGG HHHHHH </ss_1>
<ss_2>-- EEEEE HHHHHHHHHHHHH EEEE HHHHHHH - EEEE HHHHHH EEEE HHHH HHHHHHHHHHHHH EEEEEE HHHHH HHHHHHHHHHHHGGG -- GGG EEEE HHHHHHHHHHHHHHHH HHHHHH EEE HHHHHHHH EEEE GGGG HHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1AG1</pdbID>
<pdbChain>O</pdbChain>
<entryIDChain>1AG1O</entryIDChain>
<sequence>NAIAK-SGAFT</sequence>
<secondary-structure> - </secondary-structure>
<atom-coordinate>
<line>ATOM 493 CA ASN O 66 38.404 30.620 6.023 1.00 9.72 C </line>
<line>ATOM 501 CA ALA O 67 39.954 30.837 2.626 1.00 11.73 C </line>
<line>ATOM 506 CA ILE O 68 43.103 30.768 0.529 1.00 12.44 C </line>
<line>ATOM 514 CA ALA O 69 43.971 33.747 -1.745 1.00 15.24 C </line>
<line>ATOM 519 CA LYS O 70 44.057 32.058 -5.126 1.00 16.21 C </line>
<line>ATOM 528 CA SER O 71 42.495 29.203 -6.991 1.00 16.08 C </line>
<line>ATOM 534 CA GLY O 72 44.773 26.420 -8.076 1.00 13.44 C </line>
<line>ATOM 538 CA ALA O 73 46.480 23.245 -7.011 1.00 21.64 C </line>
<line>ATOM 543 CA PHE O 74 45.503 23.279 -3.396 1.00 18.43 C </line>
<line>ATOM 554 CA THR O 75 43.467 20.093 -2.940 1.00 7.56 C </line>
</atom-coordinate>
<distance-map>
<line> THR PHE ALA GLY SER LYS ALA ILE ALA ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 14.72 13.89 17.01 16.03 13.72 12.58 10.06 7.23 3.74 </line>
<line>ALA CA 12.60 11.14 13.90 12.54 10.08 8.86 6.61 3.78 </line>
<line>ILE CA 11.23 8.79 11.17 9.78 7.71 5.88 3.85 </line>
<line>ALA CA 13.72 10.71 12.01 9.72 7.10 3.78 </line>
<line>LYS CA 12.18 9.06 9.33 6.40 3.75 </line>
<line>SER CA 10.02 7.55 7.17 3.76 </line>
<line>GLY CA 8.25 5.68 3.76 </line>
<line>ALA CA 5.97 3.74 </line>
<line>PHE CA 3.81 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>ASN CA 472</line>
<line>ALA CA 433</line>
<line>ILE CA 338</line>
<line>ALA CA 303</line>
<line>LYS CA 222</line>
<line>SER CA 178</line>
<line>GLY CA 114</line>
<line>ALA CA 94</line>
<line>PHE CA 133</line>
<line>THR CA 105</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2JK2</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2JK2A</entryIDChain>
<sequence>NCYKVTNGAFT</sequence>
<secondary-structure> </secondary-structure>
<atom-coordinate>
<line>ATOM 466 CA ASN A 65 -1.965 -7.771 -4.072 1.00 7.67 C </line>
<line>ATOM 474 CA CYS A 66 -5.179 -5.733 -4.257 1.00 8.13 C </line>
<line>ATOM 480 CA TYR A 67 -8.257 -4.951 -2.178 1.00 9.63 C </line>
<line>ATOM 492 CA LYS A 68 -11.921 -5.948 -2.680 1.00 11.41 C </line>
<line>ATOM 501 CA VAL A 69 -13.718 -2.726 -3.723 1.00 12.71 C </line>
<line>ATOM 508 CA THR A 70 -13.173 -0.312 -6.608 1.00 12.33 C </line>
<line>ATOM 515 CA ASN A 71 -12.580 2.812 -4.452 1.00 10.74 C </line>
<line>ATOM 523 CA GLY A 72 -12.863 3.622 -0.773 1.00 10.66 C </line>
<line>ATOM 527 CA ALA A 73 -11.513 4.712 2.583 1.00 11.13 C </line>
<line>ATOM 532 CA PHE A 74 -8.704 2.143 2.615 1.00 10.04 C </line>
<line>ATOM 543 CA THR A 75 -5.461 4.034 3.135 1.00 9.17 C </line>
</atom-coordinate>
<distance-map>
<line> THR PHE ALA GLY ASN THR VAL LYS TYR CYS ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 14.27 13.73 17.07 16.11 14.99 13.70 12.79 10.22 7.15 3.81 </line>
<line>CYS CA 12.25 11.03 14.00 12.60 11.31 9.94 9.07 6.93 3.80 </line>
<line>TYR CA 10.81 8.57 11.25 9.83 9.17 8.08 6.10 3.83 </line>
<line>LYS CA 13.24 10.19 11.90 9.80 8.96 6.98 3.83 </line>
<line>VAL CA 12.68 9.43 10.00 7.05 5.70 3.80 </line>
<line>THR CA 13.16 10.54 10.61 7.04 3.84 </line>
<line>ASN CA 10.48 8.09 7.36 3.78 </line>
<line>GLY CA 8.38 5.56 3.78 </line>
<line>ALA CA 6.11 3.81 </line>
<line>PHE CA 3.79 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>ASN CA 484</line>
<line>CYS CA 450</line>
<line>TYR CA 365</line>
<line>LYS CA 323</line>
<line>VAL CA 251</line>
<line>THR CA 232</line>
<line>ASN CA 183</line>
<line>GLY CA 136</line>
<line>ALA CA 107</line>
<line>PHE CA 149</line>
<line>THR CA 124</line>
</n14>
</entryChain>
<parallel>
<x>52.65399932861328</x>
<y>31.610000610351562</y>
<z>-0.027000000700354576</z>
</parallel>
<rotation>
<x>-0.5329999923706055</x>
<y>-0.5040000081062317</y>
<z>0.6800000071525574</z>
<x>-0.19200000166893005</x>
<y>-0.7099999785423279</y>
<z>-0.6769999861717224</z>
<x>0.8240000009536743</x>
<y>-0.492000013589859</y>
<z>0.28200000524520874</z>
</rotation>
<rmsd>0.6829860210418701</rmsd>
<dmax>1.5149110555648804</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2JK2</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2JK2A</entryIDChain>
<sequence>ARQKL-DPKIA</sequence>
<secondary-structure>HHHH - E</secondary-structure>
<atom-coordinate>
<line>ATOM 361 CA ALA A 51 7.495 -1.615 -15.020 1.00 12.42 C </line>
<line>ATOM 366 CA ARG A 52 4.608 -1.670 -17.512 1.00 12.24 C </line>
<line>ATOM 377 CA GLN A 53 6.063 1.400 -19.247 1.00 14.52 C </line>
<line>ATOM 386 CA LYS A 54 9.554 -0.168 -19.551 1.00 15.52 C </line>
<line>ATOM 395 CA LEU A 55 8.600 -3.820 -20.237 1.00 15.57 C </line>
<line>ATOM 403 CA ASP A 56 8.019 -5.063 -23.782 1.00 17.78 C </line>
<line>ATOM 411 CA PRO A 57 4.288 -5.873 -24.332 1.00 18.46 C </line>
<line>ATOM 418 CA LYS A 58 5.267 -9.570 -24.807 1.00 17.04 C </line>
<line>ATOM 427 CA ILE A 59 5.578 -9.725 -21.004 1.00 13.91 C </line>
<line>ATOM 435 CA ALA A 60 2.501 -9.125 -18.838 1.00 11.05 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ILE LYS PRO ASP LEU LYS GLN ARG ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 9.79 10.26 12.81 10.73 9.43 5.77 5.18 5.39 3.81 </line>
<line>ARG CA 7.86 8.83 10.77 8.02 7.90 5.29 5.56 3.81 </line>
<line>GLN CA 11.12 11.27 12.32 9.05 8.13 5.89 3.84 </line>
<line>LYS CA 11.42 10.45 11.59 9.12 6.65 3.84 </line>
<line>LEU CA 8.20 6.68 8.07 6.29 3.80 </line>
<line>ASP CA 8.45 5.95 5.38 3.86 </line>
<line>PRO CA 6.63 5.25 3.85 </line>
<line>LYS CA 6.59 3.82 </line>
<line>ILE CA 3.81 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ALA CA 379</line>
<line>ARG CA 337</line>
<line>GLN CA 263</line>
<line>LYS CA 274</line>
<line>LEU CA 319</line>
<line>ASP CA 256</line>
<line>PRO CA 246</line>
<line>LYS CA 273</line>
<line>ILE CA 373</line>
<line>ALA CA 415</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AG1</pdbID>
<pdbChain>O</pdbChain>
<entryIDChain>1AG1O</entryIDChain>
<sequence>TKERLSHPKFV</sequence>
<secondary-structure>HHHH E</secondary-structure>
<atom-coordinate>
<line>ATOM 372 CA THR O 51 22.432 28.871 4.153 1.00 22.66 C </line>
<line>ATOM 379 CA LYS O 52 22.164 31.349 1.285 1.00 33.41 C </line>
<line>ATOM 388 CA GLU O 53 18.823 29.922 0.169 1.00 31.54 C </line>
<line>ATOM 397 CA ARG O 54 17.186 29.840 3.578 1.00 28.05 C </line>
<line>ATOM 408 CA LEU O 55 18.303 32.868 5.642 1.00 17.08 C </line>
<line>ATOM 416 CA SER O 56 15.952 35.650 4.725 1.00 19.83 C </line>
<line>ATOM 422 CA HIS O 57 16.298 38.096 7.637 1.00 17.90 C </line>
<line>ATOM 432 CA PRO O 58 17.264 41.470 6.261 1.00 12.53 C </line>
<line>ATOM 439 CA LYS O 59 19.769 41.897 9.065 1.00 14.72 C </line>
<line>ATOM 448 CA PHE O 60 21.817 38.751 8.353 1.00 13.25 C </line>
<line>ATOM 459 CA VAL O 61 24.655 38.066 5.899 1.00 9.70 C </line>
</atom-coordinate>
<distance-map>
<line> VAL PHE LYS PRO HIS SER LEU ARG GLU LYS THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 9.62 10.75 14.17 13.78 11.61 9.40 5.94 5.37 5.48 3.80 </line>
<line>LYS CA 8.52 10.24 13.32 12.30 10.97 8.30 6.02 5.68 3.80 </line>
<line>GLU CA 11.54 12.41 14.95 13.15 11.36 7.86 6.24 3.78 </line>
<line>ARG CA 11.35 11.12 13.50 11.94 9.24 6.05 3.83 </line>
<line>LEU CA 8.21 7.37 9.77 8.69 5.94 3.76 </line>
<line>SER CA 9.11 7.56 8.51 6.16 3.82 </line>
<line>HIS CA 8.54 5.60 5.34 3.77 </line>
<line>PRO CA 8.15 5.70 3.78 </line>
<line>LYS CA 6.97 3.82 </line>
<line>PHE CA 3.81 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>THR CA 369</line>
<line>LYS CA 322</line>
<line>GLU CA 241</line>
<line>ARG CA 274</line>
<line>LEU CA 323</line>
<line>SER CA 242</line>
<line>HIS CA 285</line>
<line>PRO CA 242</line>
<line>LYS CA 317</line>
<line>PHE CA 409</line>
<line>VAL CA 402</line>
</n14>
</entryChain>
<parallel>
<x>-12.293000221252441</x>
<y>-37.58599853515625</y>
<z>-25.28499984741211</z>
</parallel>
<rotation>
<x>-0.5130000114440918</x>
<y>-0.41499999165534973</y>
<z>0.7519999742507935</z>
<x>-0.5680000185966492</x>
<y>-0.49300000071525574</y>
<z>-0.6589999794960022</z>
<x>0.6439999938011169</x>
<y>-0.7649999856948853</y>
<z>0.017000000923871994</z>
</rotation>
<rmsd>1.5515929460525513</rmsd>
<dmax>2.6797380447387695</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2JK2</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2JK2A</entryIDChain>
<sequence>ADNVK--DWSKV</sequence>
<secondary-structure>GGG -- GGG </secondary-structure>
<atom-coordinate>
<line>ATOM 1114 CA ALA A 151 -13.186 -21.916 -6.174 1.00 23.64 C </line>
<line>ATOM 1119 CA ASP A 152 -16.403 -20.566 -4.606 1.00 24.94 C </line>
<line>ATOM 1127 CA ASN A 153 -15.350 -17.134 -5.841 1.00 25.54 C </line>
<line>ATOM 1135 CA VAL A 154 -14.584 -18.349 -9.342 1.00 27.23 C </line>
<line>ATOM 1142 CA LYS A 155 -17.465 -18.749 -11.808 1.00 30.32 C </line>
<line>ATOM 1151 CA ASP A 156 -15.110 -18.628 -14.778 1.00 30.71 C </line>
<line>ATOM 1159 CA TRP A 157 -11.750 -20.406 -14.573 1.00 27.91 C </line>
<line>ATOM 1173 CA SER A 158 -10.462 -19.047 -17.920 1.00 25.48 C </line>
<line>ATOM 1179 CA LYS A 159 -8.632 -16.165 -16.213 1.00 22.54 C </line>
<line>ATOM 1188 CA VAL A 160 -7.354 -17.979 -13.113 1.00 19.82 C </line>
</atom-coordinate>
<distance-map>
<line> VAL LYS SER TRP ASP LYS VAL ASN ASP ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 9.88 12.43 12.39 8.65 9.41 7.75 4.97 5.26 3.82 </line>
<line>ASP CA 12.69 14.65 14.66 11.00 10.44 7.50 5.54 3.80 </line>
<line>ASN CA 10.84 12.40 13.17 10.00 9.06 6.53 3.78 </line>
<line>VAL CA 8.16 9.35 9.54 6.29 5.47 3.81 </line>
<line>LYS CA 10.22 10.20 9.30 6.56 3.79 </line>
<line>ASP CA 7.96 7.08 5.63 3.81 </line>
<line>TRP CA 5.23 5.51 3.84 </line>
<line>SER CA 5.82 3.82 </line>
<line>LYS CA 3.81 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>ALA CA 399</line>
<line>ASP CA 277</line>
<line>ASN CA 325</line>
<line>VAL CA 343</line>
<line>LYS CA 237</line>
<line>ASP CA 257</line>
<line>TRP CA 358</line>
<line>SER CA 297</line>
<line>LYS CA 354</line>
<line>VAL CA 460</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AG1</pdbID>
<pdbChain>O</pdbChain>
<entryIDChain>1AG1O</entryIDChain>
<sequence>AKKLKKADWAKV</sequence>
<secondary-structure>GGG GGGGE</secondary-structure>
<atom-coordinate>
<line>ATOM 1123 CA ALA O 151 48.405 46.437 9.221 1.00 27.56 C </line>
<line>ATOM 1128 CA LYS O 152 51.641 46.502 7.314 1.00 32.55 C </line>
<line>ATOM 1137 CA LYS O 153 49.719 45.370 4.278 1.00 20.47 C </line>
<line>ATOM 1146 CA LEU O 154 46.703 47.612 4.360 1.00 25.65 C </line>
<line>ATOM 1154 CA LYS O 155 46.245 51.254 3.405 1.00 30.42 C </line>
<line>ATOM 1163 CA LYS O 156 44.025 53.564 5.428 1.00 29.29 C </line>
<line>ATOM 1172 CA ALA O 157 41.105 53.220 3.044 1.00 23.35 C </line>
<line>ATOM 1177 CA ASP O 158 41.245 49.485 3.480 1.00 15.01 C </line>
<line>ATOM 1185 CA TRP O 159 40.198 49.697 7.174 1.00 9.27 C </line>
<line>ATOM 1199 CA ALA O 160 36.616 50.365 6.073 1.00 17.49 C </line>
<line>ATOM 1204 CA LYS O 161 36.460 46.725 5.239 1.00 21.24 C </line>
<line>ATOM 1213 CA VAL O 162 38.149 45.468 8.429 1.00 19.53 C </line>
</atom-coordinate>
<distance-map>
<line> VAL LYS ALA TRP ASP ALA LYS LYS LEU LYS LYS ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 10.33 12.59 12.82 9.06 9.67 11.72 9.19 7.85 5.28 5.22 3.76 </line>
<line>LYS CA 13.58 15.32 15.56 11.88 11.47 13.20 10.56 8.18 5.86 3.77 </line>
<line>LYS CA 12.29 13.36 14.14 10.85 9.45 11.72 10.04 6.89 3.76 </line>
<line>LEU CA 9.71 10.32 10.60 7.39 5.84 8.03 6.61 3.79 </line>
<line>LYS CA 11.15 10.94 10.03 7.29 5.30 5.51 3.79 </line>
<line>LYS CA 10.44 10.20 8.10 5.71 5.31 3.79 </line>
<line>ALA CA 9.89 8.28 6.12 5.50 3.76 </line>
<line>ASP CA 7.09 5.80 5.38 3.85 </line>
<line>TRP CA 4.86 5.15 3.81 </line>
<line>ALA CA 5.65 3.74 </line>
<line>LYS CA 3.82 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>ALA CA 373</line>
<line>LYS CA 256</line>
<line>LYS CA 262</line>
<line>LEU CA 292</line>
<line>LYS CA 236</line>
<line>LYS CA 235</line>
<line>ALA CA 214</line>
<line>ASP CA 290</line>
<line>TRP CA 370</line>
<line>ALA CA 324</line>
<line>LYS CA 356</line>
<line>VAL CA 468</line>
</n14>
</entryChain>
<parallel>
<x>-59.3849983215332</x>
<y>-67.69000244140625</y>
<z>-16.292999267578125</z>
</parallel>
<rotation>
<x>-0.5740000009536743</x>
<y>-0.14000000059604645</y>
<z>0.8069999814033508</z>
<x>-0.6470000147819519</x>
<y>-0.5249999761581421</y>
<z>-0.5519999861717224</z>
<x>0.5009999871253967</x>
<y>-0.8389999866485596</y>
<z>0.210999995470047</z>
</rotation>
<rmsd>0.818120002746582</rmsd>
<dmax>1.5935050249099731</dmax>
</indel>