NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1AGPA-2ATVA
confEVID 1AGPA-2ATVA
pdbIDA 1AGP
pdbIDB 2ATV
pdbChainA A
pdbChainB A
identity 0.389200001955032
indelSize 3
alignment <alignment>
<seq1>MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQG-VEDAFYTLVREIRQH--</seq1>
<seq2>-AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDT-AGQEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRM</seq2>
<ss_1> EEEEEEEE HHHHHHHH EEEEEEEEE EEEEEEEEE GGGGGGHHHHHHH EEEEEEE HHHHHHHHHHHHHHHHH EEEEE - HHHHHHHHHH -HHHHHHHHHHHHH --</ss_1>
<ss_2>- EEEEEE HHHHHHHH EEEEEEEEE EEEEEEEEE - HHHHHHHHH EEEEEEE HHHHH HHHHHHHHHHHH EEEEEE GGGGGG HHHHHHHHHH EEE HHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1AGP</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1AGPA</entryIDChain>
<sequence>NKCDL-AARTV</sequence>
<secondary-structure>E - </secondary-structure>
<atom-coordinate>
<line>ATOM 1115 CA ASN A 116 0.343 -5.433 14.885 1.00 2.00 C </line>
<line>ATOM 1126 CA LYS A 117 -0.893 -8.722 16.373 1.00 7.00 C </line>
<line>ATOM 1139 CA CYS A 118 -4.176 -8.344 14.519 1.00 13.49 C </line>
<line>ATOM 1146 CA ASP A 119 -4.667 -12.137 15.065 1.00 19.17 C </line>
<line>ATOM 1155 CA LEU A 120 -5.725 -11.502 18.630 1.00 17.45 C </line>
<line>ATOM 1164 CA ALA A 121 -9.428 -11.856 19.421 1.00 22.78 C </line>
<line>ATOM 1170 CA ALA A 122 -9.084 -9.567 22.513 1.00 16.56 C </line>
<line>ATOM 1176 CA ARG A 123 -8.435 -6.208 20.992 1.00 14.72 C </line>
<line>ATOM 1193 CA THR A 124 -8.239 -2.988 23.090 1.00 20.94 C </line>
<line>ATOM 1202 CA VAL A 125 -7.365 -0.504 20.264 1.00 9.09 C </line>
</atom-coordinate>
<distance-map>
<line> VAL THR ARG ALA ALA LEU ASP CYS LYS ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 10.61 12.12 10.72 12.81 12.54 9.36 8.37 5.39 3.82 </line>
<line>LYS CA 11.16 11.49 9.19 10.27 9.59 6.01 5.26 3.79 </line>
<line>CYS CA 10.23 10.89 8.04 9.46 8.00 5.41 3.86 </line>
<line>ASP CA 13.02 12.68 9.19 9.03 6.46 3.77 </line>
<line>LEU CA 11.24 9.93 6.40 5.49 3.80 </line>
<line>ALA CA 11.57 9.67 5.95 3.86 </line>
<line>ALA CA 9.49 6.66 3.74 </line>
<line>ARG CA 5.85 3.85 </line>
<line>THR CA 3.86 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>ASN CA 572</line>
<line>LYS CA 474</line>
<line>CYS CA 396</line>
<line>ASP CA 299</line>
<line>LEU CA 274</line>
<line>ALA CA 193</line>
<line>ALA CA 192</line>
<line>ARG CA 278</line>
<line>THR CA 267</line>
<line>VAL CA 364</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2ATV</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2ATVA</entryIDChain>
<sequence>NKADLDHSRQV</sequence>
<secondary-structure>E GGGGGG </secondary-structure>
<atom-coordinate>
<line>ATOM 878 CA ASN A 118 4.047 26.965 9.540 1.00 32.01 C </line>
<line>ATOM 886 CA LYS A 119 1.563 24.061 9.247 1.00 32.28 C </line>
<line>ATOM 895 CA ALA A 120 -1.493 26.354 9.034 1.00 37.32 C </line>
<line>ATOM 900 CA ASP A 121 -3.300 23.491 7.255 1.00 36.30 C </line>
<line>ATOM 908 CA LEU A 122 -3.436 21.686 10.627 1.00 40.99 C </line>
<line>ATOM 916 CA ASP A 123 -5.896 24.205 12.077 1.00 55.54 C </line>
<line>ATOM 924 CA HIS A 124 -7.642 21.394 13.980 1.00 52.38 C </line>
<line>ATOM 934 CA SER A 125 -4.472 20.613 15.995 1.00 44.76 C </line>
<line>ATOM 940 CA ARG A 126 -3.525 24.286 16.465 1.00 44.08 C </line>
<line>ATOM 951 CA GLN A 127 -1.868 25.087 19.827 1.00 40.43 C </line>
<line>ATOM 960 CA VAL A 128 -0.745 28.660 19.018 1.00 35.97 C </line>
</atom-coordinate>
<distance-map>
<line> VAL GLN ARG SER HIS ASP LEU ASP ALA LYS ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 10.75 12.01 10.61 12.43 13.69 10.63 9.22 8.44 5.60 3.83 </line>
<line>LYS CA 11.04 11.17 8.83 9.69 10.69 7.98 5.70 5.29 3.83 </line>
<line>ALA CA 10.27 10.87 7.98 9.50 9.32 5.77 5.30 3.82 </line>
<line>ASP CA 13.10 12.75 9.25 9.28 8.28 5.52 3.83 </line>
<line>LEU CA 11.24 9.93 6.39 5.57 5.39 3.81 </line>
<line>ASP CA 9.72 8.78 4.99 5.50 3.82 </line>
<line>HIS CA 11.21 9.01 5.61 3.84 </line>
<line>SER CA 9.37 6.44 3.82 </line>
<line>ARG CA 5.78 3.83 </line>
<line>GLN CA 3.83 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>ASN CA 465</line>
<line>LYS CA 369</line>
<line>ALA CA 326</line>
<line>ASP CA 245</line>
<line>LEU CA 228</line>
<line>ASP CA 205</line>
<line>HIS CA 137</line>
<line>SER CA 176</line>
<line>ARG CA 236</line>
<line>GLN CA 237</line>
<line>VAL CA 303</line>
</n14>
</entryChain>
<parallel>
<x>-2.9760000705718994</x>
<y>-32.82699966430664</y>
<z>6.2820000648498535</z>
</parallel>
<rotation>
<x>0.8840000033378601</x>
<y>0.43700000643730164</y>
<z>0.16699999570846558</z>
<x>-0.20800000429153442</x>
<y>0.6869999766349792</y>
<z>-0.6970000267028809</z>
<x>-0.4189999997615814</x>
<y>0.5809999704360962</y>
<z>0.6980000138282776</z>
</rotation>
<rmsd>0.6285949945449829</rmsd>
<dmax>1.3765250444412231</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1AGP</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1AGPA</entryIDChain>
<sequence>KTRQG-VEDAF</sequence>
<secondary-structure> -HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1415 CA LYS A 147 2.024 -14.691 13.378 1.00 8.66 C </line>
<line>ATOM 1428 CA THR A 148 -0.293 -15.155 10.352 1.00 11.71 C </line>
<line>ATOM 1437 CA ARG A 149 1.973 -12.951 8.113 1.00 6.88 C </line>
<line>ATOM 1454 CA GLN A 150 -1.064 -10.866 7.432 1.00 11.10 C </line>
<line>ATOM 1466 CA GLY A 151 -0.283 -7.413 6.167 1.00 2.54 C </line>
<line>ATOM 1471 CA VAL A 152 3.476 -7.810 6.582 1.00 5.16 C </line>
<line>ATOM 1479 CA GLU A 153 4.819 -7.351 2.958 1.00 10.93 C </line>
<line>ATOM 1489 CA ASP A 154 2.113 -4.694 2.580 1.00 3.96 C </line>
<line>ATOM 1498 CA ALA A 155 3.418 -2.589 5.448 1.00 3.02 C </line>
<line>ATOM 1504 CA PHE A 156 7.037 -2.603 4.454 1.00 2.71 C </line>
</atom-coordinate>
<distance-map>
<line> PHE ALA ASP GLU VAL GLY GLN ARG THR LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 15.84 14.54 14.72 13.05 9.78 10.50 7.72 5.55 3.84 </line>
<line>THR CA 15.69 13.99 13.25 11.90 9.08 8.80 5.25 3.87 </line>
<line>ARG CA 12.09 10.80 9.94 8.13 5.57 6.29 3.75 </line>
<line>GLN CA 11.95 9.62 8.47 8.18 5.54 3.76 </line>
<line>GLY CA 8.92 6.12 5.10 6.03 3.80 </line>
<line>VAL CA 6.66 5.34 5.25 3.89 </line>
<line>GLU CA 5.45 5.55 3.81 </line>
<line>ASP CA 5.67 3.79 </line>
<line>ALA CA 3.75 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>LYS CA 359</line>
<line>THR CA 307</line>
<line>ARG CA 358</line>
<line>GLN CA 349</line>
<line>GLY CA 405</line>
<line>VAL CA 484</line>
<line>GLU CA 458</line>
<line>ASP CA 411</line>
<line>ALA CA 534</line>
<line>PHE CA 603</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2ATV</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2ATVA</entryIDChain>
<sequence>CTGEGNITEIF</sequence>
<secondary-structure> HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1119 CA ACYS A 150 2.280 21.361 2.370 0.50 38.21 C </line>
<line>ATOM 1128 CA THR A 151 -0.627 23.194 0.742 1.00 33.73 C </line>
<line>ATOM 1135 CA GLY A 152 1.297 26.313 -0.335 1.00 35.05 C </line>
<line>ATOM 1139 CA GLU A 153 -1.233 28.519 1.443 1.00 36.20 C </line>
<line>ATOM 1144 CA GLY A 154 0.253 31.774 2.728 1.00 38.07 C </line>
<line>ATOM 1148 CA ASN A 155 2.207 32.994 -0.334 1.00 44.43 C </line>
<line>ATOM 1156 CA ILE A 156 5.586 31.580 0.583 1.00 35.91 C </line>
<line>ATOM 1164 CA THR A 157 7.318 33.039 -2.484 1.00 37.12 C </line>
<line>ATOM 1171 CA AGLU A 158 6.174 36.558 -1.583 0.50 39.04 C </line>
<line>ATOM 1186 CA ILE A 159 7.338 35.979 2.014 1.00 42.48 C </line>
<line>ATOM 1194 CA PHE A 160 10.913 35.286 0.844 1.00 38.56 C </line>
</atom-coordinate>
<distance-map>
<line> PHE ILE GLU THR ILE ASN GLY GLU GLY THR CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 16.45 15.47 16.18 13.61 10.89 11.94 10.61 8.03 5.73 3.80 </line>
<line>THR CA 16.72 15.12 15.17 13.06 10.44 10.26 8.85 5.41 3.82 </line>
<line>GLY CA 13.21 11.64 11.42 9.28 6.85 6.74 6.35 3.80 </line>
<line>GLU CA 13.92 11.38 11.34 10.44 7.52 5.92 3.80 </line>
<line>GLY CA 11.38 8.27 8.75 8.87 5.75 3.83 </line>
<line>ASN CA 9.08 6.38 5.48 5.54 3.78 </line>
<line>ILE CA 6.49 4.95 5.46 3.81 </line>
<line>THR CA 5.39 5.37 3.81 </line>
<line>GLU CA 5.47 3.82 </line>
<line>ILE CA 3.82 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>CYS CA 292</line>
<line>THR CA 230</line>
<line>GLY CA 276</line>
<line>GLU CA 252</line>
<line>GLY CA 307</line>
<line>ASN CA 285</line>
<line>ILE CA 380</line>
<line>THR CA 355</line>
<line>GLU CA 319</line>
<line>ILE CA 401</line>
<line>PHE CA 493</line>
</n14>
</entryChain>
<parallel>
<x>-1.034999966621399</x>
<y>-39.159000396728516</y>
<z>6.76200008392334</z>
</parallel>
<rotation>
<x>0.9240000247955322</x>
<y>0.3709999918937683</y>
<z>0.0860000029206276</z>
<x>-0.24699999392032623</x>
<y>0.7549999952316284</y>
<z>-0.6069999933242798</z>
<x>-0.28999999165534973</x>
<y>0.5400000214576721</y>
<z>0.7900000214576721</z>
</rotation>
<rmsd>1.2708849906921387</rmsd>
<dmax>1.9912500381469727</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2ATV</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2ATVA</entryIDChain>
<sequence>EILDT-AGQED</sequence>
<secondary-structure>EEEE - </secondary-structure>
<atom-coordinate>
<line>ATOM 407 CA GLU A 57 21.738 31.987 -0.900 1.00 34.70 C </line>
<line>ATOM 416 CA ILE A 58 19.492 30.248 1.604 1.00 33.25 C </line>
<line>ATOM 424 CA LEU A 59 20.884 28.212 4.481 1.00 32.31 C </line>
<line>ATOM 432 CA ASP A 60 18.511 25.506 5.668 1.00 34.90 C </line>
<line>ATOM 440 CA THR A 61 19.797 24.684 9.204 1.00 35.97 C </line>
<line>ATOM 447 CA ALA A 62 19.390 21.283 10.884 1.00 42.65 C </line>
<line>ATOM 452 CA GLY A 63 20.912 20.924 14.386 1.00 53.74 C </line>
<line>ATOM 456 CA GLN A 64 19.649 23.855 16.520 1.00 50.50 C </line>
<line>ATOM 465 CA GLU A 65 22.181 23.523 19.359 1.00 56.85 C </line>
<line>ATOM 474 CA ASP A 66 23.921 26.698 20.603 1.00 64.08 C </line>
</atom-coordinate>
<distance-map>
<line> ASP GLU GLN GLY ALA THR ASP LEU ILE GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 22.25 21.96 19.34 18.89 16.09 12.62 9.78 6.63 3.79 </line>
<line>ILE CA 19.83 19.18 16.23 15.88 12.90 9.42 6.32 3.79 </line>
<line>LEU CA 16.48 15.65 12.86 12.30 9.55 5.99 3.79 </line>
<line>ASP CA 15.93 14.31 11.04 10.14 6.77 3.85 </line>
<line>THR CA 12.29 10.50 7.36 6.50 3.82 </line>
<line>ALA CA 12.01 9.20 6.20 3.84 </line>
<line>GLY CA 9.00 5.75 3.84 </line>
<line>GLN CA 6.56 3.82 </line>
<line>GLU CA 3.83 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>GLU CA 352</line>
<line>ILE CA 436</line>
<line>LEU CA 407</line>
<line>ASP CA 426</line>
<line>THR CA 392</line>
<line>ALA CA 311</line>
<line>GLY CA 256</line>
<line>GLN CA 319</line>
<line>GLU CA 211</line>
<line>ASP CA 216</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AGP</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1AGPA</entryIDChain>
<sequence>DILDTAGQEEY</sequence>
<secondary-structure>EEEE GGG</secondary-structure>
<atom-coordinate>
<line>ATOM 502 CA ASP A 54 18.366 -2.095 4.713 1.00 10.59 C </line>
<line>ATOM 511 CA ILE A 55 16.267 -2.623 7.907 1.00 7.31 C </line>
<line>ATOM 520 CA LEU A 56 17.064 -1.568 11.445 1.00 5.26 C </line>
<line>ATOM 529 CA ASP A 57 15.308 -3.398 14.254 1.00 4.42 C </line>
<line>ATOM 538 CA THR A 58 15.446 -1.223 17.315 1.00 5.57 C </line>
<line>ATOM 547 CA ALA A 59 14.746 -1.333 20.972 1.00 8.76 C </line>
<line>ATOM 553 CA GLY A 60 11.476 -0.736 22.853 1.00 9.72 C </line>
<line>ATOM 558 CA GLN A 61 13.202 -0.613 26.244 1.00 15.44 C </line>
<line>ATOM 570 CA GLU A 62 13.556 2.930 27.607 1.00 20.94 C </line>
<line>ATOM 580 CA GLU A 63 17.113 2.084 28.855 1.00 22.24 C </line>
<line>ATOM 590 CA TYR A 64 18.186 2.267 25.272 1.00 11.70 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLU GLU GLN GLY ALA THR ASP LEU ILE ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 21.02 24.53 23.93 22.19 19.45 16.67 12.97 10.10 6.88 3.86 </line>
<line>ILE CA 18.14 21.49 20.65 18.70 15.81 13.22 9.55 6.47 3.78 </line>
<line>LEU CA 14.39 17.79 17.14 15.32 12.73 9.81 6.10 3.78 </line>
<line>ASP CA 12.72 15.70 14.88 12.49 9.78 7.05 3.76 </line>
<line>THR CA 9.11 12.12 11.26 9.23 6.83 3.73 </line>
<line>ALA CA 6.58 8.91 7.98 5.54 3.82 </line>
<line>GLY CA 7.74 8.70 6.35 3.81 </line>
<line>GLN CA 5.84 5.42 3.81 </line>
<line>GLU CA 5.23 3.86 </line>
<line>GLU CA 3.74 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ASP CA 432</line>
<line>ILE CA 513</line>
<line>LEU CA 492</line>
<line>ASP CA 529</line>
<line>THR CA 511</line>
<line>ALA CA 449</line>
<line>GLY CA 469</line>
<line>GLN CA 336</line>
<line>GLU CA 285</line>
<line>GLU CA 213</line>
<line>TYR CA 281</line>
</n14>
</entryChain>
<parallel>
<x>4.960999965667725</x>
<y>27.003000259399414</y>
<z>-8.810999870300293</z>
</parallel>
<rotation>
<x>0.9399999976158142</x>
<y>0.3409999907016754</y>
<z>-0.009999999776482582</z>
<x>-0.26100000739097595</x>
<y>0.7369999885559082</y>
<z>0.6230000257492065</z>
<x>0.2199999988079071</x>
<y>-0.5830000042915344</y>
<z>0.7820000052452087</z>
</rotation>
<rmsd>2.070719003677368</rmsd>
<dmax>3.146610975265503</dmax>
</indel>