NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1AIAB-1YAAA
confEVID 1AIAB-1YAAA
pdbIDA 1AIA
pdbIDB 1YAA
pdbChainA B
pdbChainB A
identity 0.365399986505508
indelSize 2
alignment <alignment>
<seq1>---MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLEN-ETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFAR-GLEEDAEGLRAFAAMH---KELIVASSYSHNFGLYNERVGACTLVAAD----SETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL----</seq1>
<seq2>SATLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTPQMVKRLEETHAVYLVASGRASIAGLNQGNVEYVAKAIDEVVRFYA</seq2>
<ss_1>--- HHHHHHHHHH HHHHHHHHHHHHH- HHHHHHHHHHHH HHHH EEEEEEE HHHHHHHHHHHHHHH EEEE HHHHHHH EEEEEEEEE EEEHHHHHHGGGG EEEE HHHHHHHHHHHHH EEEEEE - GGGHHHHHHHHH --- EEEEEEE GGG EEEEEEE ----HHHHHHHHHHHHHHHH HHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHHH GGG EEE HHHHHHHH EEEEEGG HHHHHHHHH ----</ss_1>
<ss_2> HHHHHHHH HHHHHHHHHHH HHHHHHHHHHHH HHHH EEEEEEE HHHHHHHHHHHHHHHH EEE HHHHHH EEEEEEE EEEHHHHHHHHHH EEEE HHHHHHHHHHHHH EEEEEE HHHH HHHHHHHHH EEEEEEE GGG EEEEEEE GGHHHHHHHHHHHHHHHHH HHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHH HHHHHHHH EEE EEEEGG HHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1AIA</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1AIAB</entryIDChain>
<sequence>YLLEN-ETTKN</sequence>
<secondary-structure>HHHHH- </secondary-structure>
<atom-coordinate>
<line>ATOM 3480 CA TYR B 59 5.970 46.070 1.095 1.00 13.49 C </line>
<line>ATOM 3492 CA LEU B 60 6.023 43.718 4.168 1.00 26.48 C </line>
<line>ATOM 3500 CA LEU B 61 4.184 40.980 2.242 1.00 22.88 C </line>
<line>ATOM 3508 CA GLU B 62 6.871 41.136 -0.479 1.00 26.53 C </line>
<line>ATOM 3517 CA ASN B 63 9.858 41.581 1.799 1.00 19.20 C </line>
<line>ATOM 3525 CA GLU B 64 9.452 39.484 4.983 1.00 20.82 C </line>
<line>ATOM 3534 CA THR B 66 11.402 36.305 5.014 1.00 19.16 C </line>
<line>ATOM 3541 CA THR B 67 10.745 35.248 8.578 1.00 18.10 C </line>
<line>ATOM 3548 CA LYS B 68 8.253 35.649 11.338 1.00 17.31 C </line>
<line>ATOM 3557 CA ASN B 69 10.908 34.874 13.912 1.00 18.63 C </line>
</atom-coordinate>
<distance-map>
<line> ASN LYS THR THR GLU ASN GLU LEU LEU TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 17.72 14.79 14.00 11.84 8.40 5.98 5.26 5.51 3.87 </line>
<line>LEU CA 14.04 11.02 10.65 9.20 5.51 4.99 5.38 3.82 </line>
<line>LEU CA 14.79 11.30 10.77 9.04 6.12 5.72 3.83 </line>
<line>GLU CA 16.21 13.10 11.48 8.60 6.26 3.78 </line>
<line>ASN CA 13.89 11.35 9.32 6.37 3.83 </line>
<line>GLU CA 10.15 7.52 5.70 3.73 </line>
<line>THR CA 9.03 7.10 3.78 </line>
<line>THR CA 5.35 3.74 </line>
<line>LYS CA 3.78 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>TYR CA 227</line>
<line>LEU CA 238</line>
<line>LEU CA 179</line>
<line>GLU CA 141</line>
<line>ASN CA 159</line>
<line>GLU CA 175</line>
<line>THR CA 122</line>
<line>THR CA 131</line>
<line>LYS CA 162</line>
<line>ASN CA 149</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1YAA</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1YAAA</entryIDChain>
<sequence>LIHNDSSYNHE</sequence>
<secondary-structure>HHH </secondary-structure>
<atom-coordinate>
<line>ATOM 446 CA LEU A 59 33.287 16.632 53.261 1.00 19.41 C </line>
<line>ATOM 454 CA ILE A 60 33.790 19.970 55.025 1.00 19.88 C </line>
<line>ATOM 462 CA HIS A 61 30.072 20.370 55.768 1.00 30.74 C </line>
<line>ATOM 472 CA ASN A 62 29.810 16.725 56.798 1.00 33.57 C </line>
<line>ATOM 480 CA ASP A 63 32.421 17.398 59.475 1.00 27.43 C </line>
<line>ATOM 488 CA SER A 64 30.940 17.494 62.992 1.00 31.10 C </line>
<line>ATOM 494 CA SER A 65 33.532 20.097 63.988 1.00 31.42 C </line>
<line>ATOM 500 CA TYR A 66 32.628 22.431 61.093 1.00 15.50 C </line>
<line>ATOM 512 CA ASN A 67 32.690 26.107 62.120 1.00 13.94 C </line>
<line>ATOM 520 CA HIS A 68 33.339 29.724 61.142 1.00 2.11 C </line>
<line>ATOM 530 CA GLU A 69 36.048 30.546 63.728 1.00 10.31 C </line>
</atom-coordinate>
<distance-map>
<line> GLU HIS ASN TYR SER SER ASP ASN HIS ILE LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 17.63 15.28 12.99 9.77 11.28 10.05 6.32 4.96 5.53 3.81 </line>
<line>ILE CA 13.88 11.52 9.45 6.65 8.97 8.82 5.32 5.43 3.81 </line>
<line>HIS CA 14.23 11.27 8.95 6.26 8.92 7.82 5.30 3.80 </line>
<line>ASN CA 16.67 14.15 11.16 7.68 8.77 6.34 3.80 </line>
<line>ASP CA 14.29 12.47 9.11 5.29 5.37 3.82 </line>
<line>SER CA 14.04 12.60 8.83 5.55 3.81 </line>
<line>SER CA 10.75 10.04 6.35 3.83 </line>
<line>TYR CA 9.19 7.33 3.82 </line>
<line>ASN CA 5.79 3.80 </line>
<line>HIS CA 3.83 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>LEU CA 246</line>
<line>ILE CA 268</line>
<line>HIS CA 196</line>
<line>ASN CA 159</line>
<line>ASP CA 171</line>
<line>SER CA 112</line>
<line>SER CA 137</line>
<line>TYR CA 184</line>
<line>ASN CA 179</line>
<line>HIS CA 190</line>
<line>GLU CA 179</line>
</n14>
</entryChain>
<parallel>
<x>-24.215999603271484</x>
<y>20.599000930786133</y>
<z>-55.01599884033203</z>
</parallel>
<rotation>
<x>0.4569999873638153</x>
<y>0.6489999890327454</y>
<z>0.609000027179718</z>
<x>-0.32499998807907104</x>
<y>-0.515999972820282</y>
<z>0.7929999828338623</z>
<x>0.828000009059906</x>
<y>-0.5600000023841858</y>
<z>-0.02500000037252903</z>
</rotation>
<rmsd>1.830119013786316</rmsd>
<dmax>4.034695148468018</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1AIA</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1AIAB</entryIDChain>
<sequence>QGFAR-GLEED</sequence>
<secondary-structure> - GG</secondary-structure>
<atom-coordinate>
<line>ATOM 4735 CA GLN B 226 -0.397 62.828 18.998 1.00 16.28 C </line>
<line>ATOM 4744 CA GLY B 227 -1.285 64.897 15.977 1.00 16.95 C </line>
<line>ATOM 4748 CA PHE B 228 -5.057 65.492 16.485 1.00 23.46 C </line>
<line>ATOM 4759 CA ALA B 229 -5.026 68.911 18.144 1.00 18.45 C </line>
<line>ATOM 4764 CA ARG B 230 -2.786 71.412 16.104 1.00 22.24 C </line>
<line>ATOM 4775 CA GLY B 231 -0.034 69.000 14.850 1.00 14.44 C </line>
<line>ATOM 4779 CA LEU B 233 2.720 66.424 15.568 1.00 19.94 C </line>
<line>ATOM 4787 CA GLU B 234 5.321 68.732 17.090 1.00 23.20 C </line>
<line>ATOM 4796 CA GLU B 235 2.809 71.226 18.574 1.00 24.36 C </line>
<line>ATOM 4805 CA ASP B 236 1.253 68.367 20.457 1.00 4.43 C </line>
</atom-coordinate>
<distance-map>
<line> ASP GLU GLU LEU GLY ARG ALA PHE GLY GLN </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLN CA 5.96 9.00 8.44 5.87 7.45 9.37 7.69 5.93 3.77 </line>
<line>GLY CA 6.21 7.97 7.72 4.31 4.44 6.69 5.90 3.85 </line>
<line>PHE CA 7.99 9.96 10.89 7.89 6.34 6.35 3.80 </line>
<line>ALA CA 6.71 8.18 10.40 8.53 5.98 3.93 </line>
<line>ARG CA 6.67 6.12 8.60 7.45 3.87 </line>
<line>GLY CA 5.79 5.19 5.81 3.84 </line>
<line>LEU CA 5.46 5.67 3.80 </line>
<line>GLU CA 5.29 3.84 </line>
<line>GLU CA 3.76 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>GLN CA 525</line>
<line>GLY CA 461</line>
<line>PHE CA 488</line>
<line>ALA CA 440</line>
<line>ARG CA 331</line>
<line>GLY CA 345</line>
<line>LEU CA 406</line>
<line>GLU CA 332</line>
<line>GLU CA 310</line>
<line>ASP CA 416</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1YAA</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1YAAA</entryIDChain>
<sequence>QGFATGDLDKD</sequence>
<secondary-structure> HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1700 CA GLN A 226 49.313 27.053 37.178 1.00 13.08 C </line>
<line>ATOM 1709 CA GLY A 227 47.596 24.160 35.413 1.00 15.09 C </line>
<line>ATOM 1713 CA PHE A 228 45.997 26.144 32.578 1.00 19.21 C </line>
<line>ATOM 1724 CA ALA A 229 48.956 26.638 30.248 1.00 18.04 C </line>
<line>ATOM 1729 CA THR A 230 49.746 22.975 29.495 1.00 17.95 C </line>
<line>ATOM 1736 CA GLY A 231 47.087 21.468 31.727 1.00 18.52 C </line>
<line>ATOM 1740 CA ASP A 232 49.939 19.910 33.723 1.00 16.84 C </line>
<line>ATOM 1748 CA LEU A 233 50.879 21.350 37.113 1.00 15.03 C </line>
<line>ATOM 1756 CA ASP A 234 54.558 20.358 37.041 1.00 16.79 C </line>
<line>ATOM 1764 CA LYS A 235 55.008 21.467 33.433 1.00 23.20 C </line>
<line>ATOM 1773 CA ASP A 236 53.521 24.870 34.339 1.00 16.71 C </line>
</atom-coordinate>
<distance-map>
<line> ASP LYS ASP LEU ASP GLY THR ALA PHE GLY GLN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLN CA 5.53 8.81 8.51 5.91 7.96 8.12 8.71 6.95 5.74 3.80 </line>
<line>GLY CA 6.06 8.13 8.10 4.64 5.14 4.59 6.41 5.89 3.81 </line>
<line>PHE CA 7.83 10.19 11.26 8.21 7.46 4.88 5.80 3.80 </line>
<line>ALA CA 6.38 8.57 10.82 8.88 7.64 5.69 3.82 </line>
<line>THR CA 6.43 6.74 9.32 7.87 5.23 3.78 </line>
<line>GLY CA 7.73 8.10 9.24 6.59 3.81 </line>
<line>ASP CA 6.15 5.31 5.70 3.80 </line>
<line>LEU CA 5.20 5.53 3.81 </line>
<line>ASP CA 5.36 3.80 </line>
<line>LYS CA 3.82 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>GLN CA 501</line>
<line>GLY CA 444</line>
<line>PHE CA 479</line>
<line>ALA CA 442</line>
<line>THR CA 342</line>
<line>GLY CA 333</line>
<line>ASP CA 310</line>
<line>LEU CA 383</line>
<line>ASP CA 315</line>
<line>LYS CA 286</line>
<line>ASP CA 402</line>
</n14>
</entryChain>
<parallel>
<x>-50.441001892089844</x>
<y>43.63800048828125</y>
<z>-17.44700050354004</z>
</parallel>
<rotation>
<x>0.609000027179718</x>
<y>0.4869999885559082</y>
<z>0.6259999871253967</z>
<x>-0.4749999940395355</x>
<y>-0.40799999237060547</y>
<z>0.7799999713897705</z>
<x>0.6349999904632568</x>
<y>-0.7720000147819519</y>
<z>-0.017000000923871994</z>
</rotation>
<rmsd>0.6164969801902771</rmsd>
<dmax>1.2551599740982056</dmax>
</indel>