NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1AJ8A-1IOMA
confEVID 1AJ8A-1IOMA
pdbIDA 1AJ8
pdbIDB 1IOM
pdbChainA A
pdbChainB A
identity 0.456000000238419
indelSize 3
alignment <alignment>
<seq1>LAKGLEDVYIDQTNICYIDGKEGKLYYRGYSVEELAELSTFEEVVYLLWWGKLPSLSELENFKKELAKSRGLPKEVIEIMEALPKNTHPMGALRTIISYLGNIDDSGDIPVTPEEVYRIGISVTAKIPTIVANWYRIKNGLEYVPPKEKLSHAANFLYMLHGEEPPKEWEKAMDVALILYAEHEINASTLAVMTVGSTLSDYYSAILAGIGALKGPIHGGAVEEAIKQFMEIGSPEKVEEWFFKALQQKRKIMGAGHRVYKTYDPRARIFKKYAS----KLGDKKLFEIAERLERLVEEYLSKKGISINVDYWSGLVFYGMKIPIELYTTIFAMGRIAGWTAHLAEYVSH-NRIIRPRLQYVGEIGKKYLPIELRR</seq1>
<seq2>VARGLEGVLFTESRMCYIDGQQGKLYYYGIPIQELAEKSSFEETTFLLLHGRLPRRQELEEFSAALARRRALPAHLLESFKRYPVSAHPMSFLRTAVSEFGMLDPTEGD-ISREALYEKGLDLIAKFATIVAANKRLKEGKEPIPPREDLSHAANFLYMANGVEPSPEQARLMDAALILHAEHGFNASTFTAIAAFSTETDLYSAITAAVASLKGPRHGGANEAVMRMIQEIGTPERAREWVREKLAKKERIMGMGHRVYKAFDPRAGVLEKLARLVAEKHGHSKEYQILKIVEEEAGKVLNPRGIYPNVDFYSGVVYSDLGFSLEFFTPIFAVARISGWVGHILEYQELDNRLLRPGAKYVGELDVPYVPLEAR-</seq2>
<ss_1> GGG EEEEE EEEE EEEHHHHHH HHHHHHHHHH HHHHHHHHHHHGGG HHHHHGGG HHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHH HHHHHHHHHHHHHH HHHHHHHHHH HHHHHHHHHHHH GGHHHHHHHHHHHH HHHHHHHHHH HHHHHHHHHHH----HH HHHHHHHHHHHHHHHH HHHHHH HHHHHHHHHHHHHHHHHHHGGGG- </ss_1>
<ss_2> GGG EEEEE EEEE EEEHHHHHH HHHHHHHHHH HHHHHHHHHHHGGG HHHHH HHHHHHHHHHHHGGG - HHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHH HHHHHHHHHHHHH HHHHHHHHHH HHHHHHHHHHHH HHHHHHHHHHHH HHHHHHHHHH HHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHH HHHHHHHHHHH GGGHHHHHHHHHHHHHHHHHHHHHH -</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1AJ8</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1AJ8A</entryIDChain>
<sequence>KKYAS----KLGDK</sequence>
<secondary-structure>HHHHH----HH H</secondary-structure>
<atom-coordinate>
<line>ATOM 2150 CA LYS A 276 35.588 34.327 50.857 1.00 17.89 C </line>
<line>ATOM 2159 CA LYS A 277 36.301 31.587 48.337 1.00 25.50 C </line>
<line>ATOM 2168 CA TYR A 278 32.630 30.525 48.395 1.00 20.22 C </line>
<line>ATOM 2180 CA ALA A 279 31.414 34.124 48.372 1.00 20.42 C </line>
<line>ATOM 2185 CA SER A 280 33.528 34.653 45.276 1.00 27.67 C </line>
<line>ATOM 2191 CA LYS A 281 31.804 31.917 43.322 1.00 29.98 C </line>
<line>ATOM 2200 CA LEU A 282 28.293 32.234 44.801 1.00 25.93 C </line>
<line>ATOM 2208 CA GLY A 283 28.019 35.826 45.988 1.00 21.49 C </line>
<line>ATOM 2212 CA ASP A 284 26.497 38.875 44.361 1.00 24.64 C </line>
<line>ATOM 2220 CA LYS A 285 29.127 40.501 42.144 1.00 28.99 C </line>
</atom-coordinate>
<distance-map>
<line> LYS ASP GLY LEU LYS SER ALA TYR LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 12.48 12.06 9.12 9.71 8.77 5.96 4.86 5.41 3.79 </line>
<line>LYS CA 13.01 12.85 9.60 8.78 6.74 5.14 5.51 3.82 </line>
<line>TYR CA 12.28 11.12 7.43 5.89 5.32 5.25 3.80 </line>
<line>ALA CA 9.20 7.93 4.48 5.11 5.52 3.79 </line>
<line>SER CA 7.96 8.25 5.68 5.79 3.78 </line>
<line>LYS CA 9.07 8.81 6.06 3.82 </line>
<line>LEU CA 8.72 6.89 3.79 </line>
<line>GLY CA 6.15 3.78 </line>
<line>ASP CA 3.80 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>LYS CA 435</line>
<line>LYS CA 354</line>
<line>TYR CA 398</line>
<line>ALA CA 427</line>
<line>SER CA 315</line>
<line>LYS CA 271</line>
<line>LEU CA 325</line>
<line>GLY CA 362</line>
<line>ASP CA 303</line>
<line>LYS CA 256</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1IOM</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1IOMA</entryIDChain>
<sequence>EKLARLVAEKHGHS</sequence>
<secondary-structure>HHHHHHHHHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 2130 CA GLU A 272 -45.770 -5.692 17.956 1.00 12.67 C </line>
<line>ATOM 2139 CA LYS A 273 -45.824 -4.780 21.653 1.00 14.02 C </line>
<line>ATOM 2145 CA LEU A 274 -42.107 -4.004 21.853 1.00 12.10 C </line>
<line>ATOM 2153 CA ALA A 275 -42.280 -1.988 18.631 1.00 12.91 C </line>
<line>ATOM 2158 CA ARG A 276 -45.034 0.118 20.178 1.00 16.78 C </line>
<line>ATOM 2169 CA LEU A 277 -42.919 0.804 23.268 1.00 16.82 C </line>
<line>ATOM 2177 CA VAL A 278 -40.035 1.994 21.089 1.00 16.54 C </line>
<line>ATOM 2184 CA ALA A 279 -42.335 4.187 18.989 1.00 17.84 C </line>
<line>ATOM 2189 CA GLU A 280 -43.831 5.742 22.116 1.00 23.29 C </line>
<line>ATOM 2198 CA LYS A 281 -40.389 6.646 23.470 1.00 23.04 C </line>
<line>ATOM 2207 CA HIS A 282 -38.467 7.546 20.312 1.00 21.36 C </line>
<line>ATOM 2217 CA GLY A 283 -41.369 8.702 18.158 1.00 22.36 C </line>
<line>ATOM 2221 CA HIS A 284 -43.559 7.248 15.426 1.00 20.74 C </line>
<line>ATOM 2231 CA SER A 285 -41.714 7.055 12.123 1.00 18.74 C </line>
</atom-coordinate>
<distance-map>
<line> SER HIS GLY HIS LYS GLU ALA VAL LEU ARG ALA LEU LYS GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 14.59 13.37 15.05 15.30 14.55 12.32 10.51 10.09 8.86 6.26 5.13 5.61 3.81 </line>
<line>LYS CA 15.74 13.73 14.62 14.42 12.78 10.72 9.98 8.93 6.50 5.18 5.43 3.80 </line>
<line>LEU CA 14.74 13.04 13.25 12.21 10.91 9.90 8.68 6.39 5.08 5.33 3.80 </line>
<line>ALA CA 11.16 9.86 10.74 10.40 10.08 8.62 6.19 5.19 5.45 3.80 </line>
<line>ARG CA 11.14 8.69 9.55 9.92 8.66 6.07 5.03 5.42 3.81 </line>
<line>LEU CA 12.84 10.17 9.53 8.60 6.37 5.15 5.49 3.81 </line>
<line>VAL CA 10.43 8.49 7.44 5.82 5.24 5.43 3.81 </line>
<line>ALA CA 7.47 4.85 4.69 5.29 5.47 3.80 </line>
<line>GLU CA 10.30 6.86 5.52 5.94 3.81 </line>
<line>LYS CA 11.43 8.67 5.78 3.80 </line>
<line>HIS CA 8.82 7.06 3.79 </line>
<line>GLY CA 6.27 3.79 </line>
<line>HIS CA 3.79 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>GLU CA 427</line>
<line>LYS CA 331</line>
<line>LEU CA 396</line>
<line>ALA CA 424</line>
<line>ARG CA 335</line>
<line>LEU CA 277</line>
<line>VAL CA 321</line>
<line>ALA CA 305</line>
<line>GLU CA 215</line>
<line>LYS CA 196</line>
<line>HIS CA 233</line>
<line>GLY CA 211</line>
<line>HIS CA 267</line>
<line>SER CA 290</line>
</n14>
</entryChain>
<parallel>
<x>74.85199737548828</x>
<y>32.33100128173828</y>
<z>26.642000198364258</z>
</parallel>
<rotation>
<x>-0.7319999933242798</x>
<y>-0.6399999856948853</y>
<z>0.2329999953508377</z>
<x>-0.5600000023841858</x>
<y>0.3709999918937683</y>
<z>-0.7409999966621399</z>
<x>0.3869999945163727</x>
<y>-0.6729999780654907</y>
<z>-0.6299999952316284</z>
</rotation>
<rmsd>3.0032780170440674</rmsd>
<dmax>3.9674510955810547</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1AJ8</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1AJ8A</entryIDChain>
<sequence>EYVSH-NRIIR</sequence>
<secondary-structure>HGGGG- </secondary-structure>
<atom-coordinate>
<line>ATOM 2727 CA GLU A 347 33.505 18.276 78.416 1.00 16.04 C </line>
<line>ATOM 2736 CA TYR A 348 33.282 20.894 81.148 1.00 14.81 C </line>
<line>ATOM 2748 CA VAL A 349 30.816 19.041 83.361 1.00 17.97 C </line>
<line>ATOM 2755 CA SER A 350 32.807 15.813 83.129 1.00 19.11 C </line>
<line>ATOM 2761 CA HIS A 351 35.068 17.405 85.774 1.00 21.86 C </line>
<line>ATOM 2771 CA ASN A 352 32.836 20.257 86.842 1.00 18.94 C </line>
<line>ATOM 2779 CA ARG A 353 33.658 23.272 88.949 1.00 19.70 C </line>
<line>ATOM 2790 CA ILE A 354 31.253 26.193 89.236 1.00 17.08 C </line>
<line>ATOM 2798 CA ILE A 355 32.493 29.227 87.325 1.00 16.11 C </line>
<line>ATOM 2806 CA ARG A 356 32.445 32.075 89.820 1.00 17.65 C </line>
</atom-coordinate>
<distance-map>
<line> ARG ILE ILE ARG ASN HIS SER VAL TYR GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 17.93 14.15 13.59 11.66 8.68 7.57 5.36 5.68 3.79 </line>
<line>TYR CA 14.17 10.40 9.88 8.16 5.75 6.06 5.47 3.80 </line>
<line>VAL CA 14.64 11.06 9.27 7.56 4.20 5.16 3.80 </line>
<line>SER CA 17.59 14.06 12.14 9.50 5.79 3.83 </line>
<line>HIS CA 15.44 12.20 10.19 6.82 3.78 </line>
<line>ASN CA 12.19 8.99 6.59 3.77 </line>
<line>ARG CA 8.93 6.28 3.79 </line>
<line>ILE CA 6.03 3.79 </line>
<line>ILE CA 3.79 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>GLU CA 414</line>
<line>TYR CA 396</line>
<line>VAL CA 352</line>
<line>SER CA 285</line>
<line>HIS CA 230</line>
<line>ASN CA 257</line>
<line>ARG CA 221</line>
<line>ILE CA 223</line>
<line>ILE CA 247</line>
<line>ARG CA 187</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1IOM</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1IOMA</entryIDChain>
<sequence>EYQELDNRLLR</sequence>
<secondary-structure>HHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 2726 CA GLU A 347 -28.057 -32.179 16.211 1.00 7.63 C </line>
<line>ATOM 2735 CA TYR A 348 -27.802 -33.767 12.778 1.00 6.60 C </line>
<line>ATOM 2747 CA GLN A 349 -24.310 -35.010 13.598 1.00 9.21 C </line>
<line>ATOM 2756 CA GLU A 350 -25.512 -36.428 16.922 1.00 10.78 C </line>
<line>ATOM 2765 CA LEU A 351 -28.718 -38.108 15.756 1.00 10.29 C </line>
<line>ATOM 2773 CA ASP A 352 -28.190 -38.986 12.096 1.00 9.21 C </line>
<line>ATOM 2781 CA ASN A 353 -25.018 -37.822 10.317 1.00 10.27 C </line>
<line>ATOM 2789 CA ARG A 354 -25.822 -39.603 7.047 1.00 10.18 C </line>
<line>ATOM 2800 CA LEU A 355 -24.647 -38.457 3.625 1.00 10.83 C </line>
<line>ATOM 2808 CA LEU A 356 -27.720 -37.273 1.712 1.00 13.19 C </line>
<line>ATOM 2816 CA ARG A 357 -28.267 -39.340 -1.430 1.00 17.40 C </line>
</atom-coordinate>
<distance-map>
<line> ARG LEU LEU ARG ASN ASP LEU GLU GLN TYR GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 19.04 15.37 14.47 12.00 8.71 7.96 5.98 5.00 5.37 3.79 </line>
<line>TYR CA 15.27 11.61 10.76 8.42 5.50 5.28 5.34 5.43 3.80 </line>
<line>GLN CA 16.13 12.57 10.56 8.14 4.38 5.75 5.80 3.81 </line>
<line>GLU CA 18.78 15.39 13.48 10.38 6.77 6.08 3.80 </line>
<line>LEU CA 17.24 14.10 12.80 9.30 6.58 3.80 </line>
<line>ASP CA 13.53 10.53 9.20 5.61 3.82 </line>
<line>ASN CA 12.28 9.04 6.73 3.81 </line>
<line>ARG CA 8.83 6.12 3.80 </line>
<line>LEU CA 6.28 3.81 </line>
<line>LEU CA 3.80 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>GLU CA 421</line>
<line>TYR CA 398</line>
<line>GLN CA 365</line>
<line>GLU CA 287</line>
<line>LEU CA 238</line>
<line>ASP CA 262</line>
<line>ASN CA 297</line>
<line>ARG CA 239</line>
<line>LEU CA 220</line>
<line>LEU CA 228</line>
<line>ARG CA 169</line>
</n14>
</entryChain>
<parallel>
<x>59.138999938964844</x>
<y>56.566001892089844</y>
<z>72.57499694824219</z>
</parallel>
<rotation>
<x>-0.9480000138282776</x>
<y>-0.1809999942779541</y>
<z>0.2630000114440918</z>
<x>-0.3100000023841858</x>
<y>0.32499998807907104</y>
<z>-0.8930000066757202</z>
<x>0.07599999755620956</x>
<y>-0.9279999732971191</y>
<z>-0.36399999260902405</z>
</rotation>
<rmsd>1.0194859504699707</rmsd>
<dmax>2.1075398921966553</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1IOM</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1IOMA</entryIDChain>
<sequence>PTEGD-ISREA</sequence>
<secondary-structure> - HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 856 CA PRO A 107 -5.758 -23.075 11.521 1.00 9.54 C </line>
<line>ATOM 863 CA THR A 108 -8.021 -26.077 12.176 1.00 8.74 C </line>
<line>ATOM 870 CA GLU A 109 -10.783 -25.096 9.755 1.00 6.95 C </line>
<line>ATOM 879 CA GLY A 110 -11.639 -28.681 8.855 1.00 8.36 C </line>
<line>ATOM 883 CA ASP A 111 -12.044 -30.036 12.393 1.00 8.50 C </line>
<line>ATOM 891 CA ILE A 112 -15.617 -31.324 12.674 1.00 9.11 C </line>
<line>ATOM 899 CA SER A 113 -15.600 -33.091 16.031 1.00 9.12 C </line>
<line>ATOM 905 CA ARG A 114 -18.762 -32.195 17.969 1.00 8.55 C </line>
<line>ATOM 916 CA GLU A 115 -16.765 -29.981 20.322 1.00 9.22 C </line>
<line>ATOM 925 CA ALA A 116 -14.970 -28.237 17.445 1.00 8.36 C </line>
</atom-coordinate>
<distance-map>
<line> ALA GLU ARG SER ILE ASP GLY GLU THR PRO </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>PRO CA 12.11 15.69 17.14 14.75 12.91 9.42 8.55 5.70 3.82 </line>
<line>THR CA 8.98 12.57 13.65 11.02 9.25 5.65 5.56 3.80 </line>
<line>GLU CA 9.30 13.09 13.47 11.25 8.41 5.74 3.79 </line>
<line>GLY CA 9.22 12.63 12.09 9.31 6.12 3.81 </line>
<line>ASP CA 6.11 9.23 8.99 5.93 3.81 </line>
<line>ILE CA 5.72 7.85 6.22 3.79 </line>
<line>SER CA 5.09 5.43 3.82 </line>
<line>ARG CA 5.51 3.80 </line>
<line>GLU CA 3.81 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>PRO CA 163</line>
<line>THR CA 190</line>
<line>GLU CA 260</line>
<line>GLY CA 252</line>
<line>ASP CA 240</line>
<line>ILE CA 307</line>
<line>SER CA 242</line>
<line>ARG CA 283</line>
<line>GLU CA 250</line>
<line>ALA CA 290</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AJ8</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1AJ8A</entryIDChain>
<sequence>DSGDIPVTPEE</sequence>
<secondary-structure> HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 840 CA ASP A 110 11.308 14.330 79.876 1.00 36.72 C </line>
<line>ATOM 848 CA SER A 111 14.913 15.356 80.627 1.00 32.57 C </line>
<line>ATOM 854 CA GLY A 112 14.255 19.094 80.460 1.00 29.01 C </line>
<line>ATOM 858 CA ASP A 113 15.177 19.642 84.118 1.00 28.80 C </line>
<line>ATOM 866 CA ILE A 114 17.760 16.910 84.637 1.00 27.95 C </line>
<line>ATOM 874 CA PRO A 115 21.212 18.138 85.757 1.00 26.23 C </line>
<line>ATOM 881 CA VAL A 116 23.696 17.780 82.899 1.00 21.46 C </line>
<line>ATOM 888 CA THR A 117 26.128 14.868 82.665 1.00 24.63 C </line>
<line>ATOM 895 CA PRO A 118 28.361 14.113 79.645 1.00 23.77 C </line>
<line>ATOM 902 CA GLU A 119 26.347 11.122 78.377 1.00 29.54 C </line>
<line>ATOM 911 CA GLU A 120 23.009 12.882 78.716 1.00 21.76 C </line>
</atom-coordinate>
<distance-map>
<line> GLU GLU PRO THR VAL PRO ILE ASP GLY SER ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 11.85 15.45 17.06 15.09 13.21 12.13 8.42 7.82 5.63 3.82 </line>
<line>SER CA 8.68 12.40 13.54 11.41 9.39 8.59 5.16 5.53 3.80 </line>
<line>GLY CA 10.87 14.63 14.98 12.79 9.84 8.80 5.87 3.81 </line>
<line>ASP CA 11.67 15.18 14.98 12.03 8.80 6.43 3.80 </line>
<line>ILE CA 8.88 12.10 12.05 8.84 6.25 3.83 </line>
<line>PRO CA 8.97 11.40 10.23 6.66 3.80 </line>
<line>VAL CA 6.48 8.47 6.77 3.80 </line>
<line>THR CA 5.41 5.70 3.83 </line>
<line>PRO CA 5.57 3.82 </line>
<line>GLU CA 3.79 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>ASP CA 191</line>
<line>SER CA 248</line>
<line>GLY CA 284</line>
<line>ASP CA 235</line>
<line>ILE CA 244</line>
<line>PRO CA 277</line>
<line>VAL CA 346</line>
<line>THR CA 317</line>
<line>PRO CA 336</line>
<line>GLU CA 279</line>
<line>GLU CA 309</line>
</n14>
</entryChain>
<parallel>
<x>-31.22800064086914</x>
<y>-45.20800018310547</y>
<z>-69.19400024414062</z>
</parallel>
<rotation>
<x>-0.7580000162124634</x>
<y>-0.5120000243186951</y>
<z>0.40400001406669617</z>
<x>-0.5550000071525574</x>
<y>0.17900000512599945</y>
<z>-0.8130000233650208</z>
<x>0.3440000116825104</x>
<y>-0.8399999737739563</y>
<z>-0.41999998688697815</z>
</rotation>
<rmsd>1.3458609580993652</rmsd>
<dmax>2.215054988861084</dmax>
</indel>