NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1AJ8B-1IOMA
confEVID 1AJ8B-1IOMA
pdbIDA 1AJ8
pdbIDB 1IOM
pdbChainA B
pdbChainB A
identity 0.456000000238419
indelSize 3
alignment <alignment>
<seq1>LAKGLEDVYIDQTNICYIDGKEGKLYYRGYSVEELAELSTFEEVVYLLWWGKLPSLSELENFKKELAKSRGLPKEVIEIMEALPKNTHPMGALRTIISYLGNIDDSGDIPVTPEEVYRIGISVTAKIPTIVANWYRIKNGLEYVPPKEKLSHAANFLYMLHGEEPPKEWEKAMDVALILYAEHEINASTLAVMTVGSTLSDYYSAILAGIGALKGPIHGGAVEEAIKQFMEIGSPEKVEEWFFKALQQKRKIMGAGHRVYKTYDPRARIFKKYAS----KLGDKKLFEIAERLERLVEEYLSKKGISINVDYWSGLVFYGMKIPIELYTTIFAMGRIAGWTAHLAEYVSH-NRIIRPRLQYVGEIGKKYLPIELR</seq1>
<seq2>VARGLEGVLFTESRMCYIDGQQGKLYYYGIPIQELAEKSSFEETTFLLLHGRLPRRQELEEFSAALARRRALPAHLLESFKRYPVSAHPMSFLRTAVSEFGMLDPTEGD-ISREALYEKGLDLIAKFATIVAANKRLKEGKEPIPPREDLSHAANFLYMANGVEPSPEQARLMDAALILHAEHGFNASTFTAIAAFSTETDLYSAITAAVASLKGPRHGGANEAVMRMIQEIGTPERAREWVREKLAKKERIMGMGHRVYKAFDPRAGVLEKLARLVAEKHGHSKEYQILKIVEEEAGKVLNPRGIYPNVDFYSGVVYSDLGFSLEFFTPIFAVARISGWVGHILEYQELDNRLLRPGAKYVGELDVPYVPLEAR</seq2>
<ss_1> EEEEE EEEE EEEHHHHHH HHHHHHHHHH HHHHHHHHHHHGGG HHHHHHHH HHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHH HHHHHHHHHHHHH HHHHHHHHHH HHHHHHHHHHHH GGHHHHHHHHHHHH HHHHHHHHHH HHHHHHHHHHH----HH HHHHHHHHHHHHHHHH HHHHHH HHHHHHHHHHHHHHHHHHHGGGG- </ss_1>
<ss_2> GGG EEEEE EEEE EEEHHHHHH HHHHHHHHHH HHHHHHHHHHHGGG HHHHH HHHHHHHHHHHHGGG - HHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHH HHHHHHHHHHHHH HHHHHHHHHH HHHHHHHHHHHH HHHHHHHHHHHH HHHHHHHHHH HHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHH HHHHHHHHHHH GGGHHHHHHHHHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1AJ8</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1AJ8B</entryIDChain>
<sequence>KKYAS----KLGDK</sequence>
<secondary-structure>HHHHH----HH H</secondary-structure>
<atom-coordinate>
<line>ATOM 5138 CA LYS B 276 17.936 31.685 110.288 1.00 21.34 C </line>
<line>ATOM 5147 CA LYS B 277 16.298 34.285 112.527 1.00 25.48 C </line>
<line>ATOM 5156 CA TYR B 278 13.169 34.371 110.371 1.00 20.54 C </line>
<line>ATOM 5168 CA ALA B 279 13.276 30.583 110.008 1.00 20.29 C </line>
<line>ATOM 5173 CA SER B 280 13.307 30.450 113.801 1.00 29.01 C </line>
<line>ATOM 5179 CA LYS B 281 10.194 32.599 113.986 1.00 29.28 C </line>
<line>ATOM 5188 CA LEU B 282 8.209 31.311 110.993 1.00 26.28 C </line>
<line>ATOM 5196 CA GLY B 283 9.664 27.884 110.287 1.00 24.10 C </line>
<line>ATOM 5200 CA ASP B 284 8.404 24.418 111.146 1.00 24.76 C </line>
<line>ATOM 5208 CA LYS B 285 9.713 23.318 114.554 1.00 30.30 C </line>
</atom-coordinate>
<distance-map>
<line> LYS ASP GLY LEU LYS SER ALA TYR LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 12.48 12.02 9.10 9.76 8.63 5.94 4.80 5.47 3.80 </line>
<line>LYS CA 12.95 12.71 9.49 8.75 6.50 5.03 5.40 3.80 </line>
<line>TYR CA 12.31 11.06 7.37 5.86 5.01 5.21 3.81 </line>
<line>ALA CA 9.28 7.94 4.52 5.21 5.42 3.80 </line>
<line>SER CA 8.02 8.21 5.67 5.88 3.79 </line>
<line>LYS CA 9.31 8.84 6.02 3.82 </line>
<line>LEU CA 8.88 6.90 3.79 </line>
<line>GLY CA 6.25 3.79 </line>
<line>ASP CA 3.81 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>LYS CA 439</line>
<line>LYS CA 356</line>
<line>TYR CA 394</line>
<line>ALA CA 430</line>
<line>SER CA 306</line>
<line>LYS CA 276</line>
<line>LEU CA 324</line>
<line>GLY CA 362</line>
<line>ASP CA 307</line>
<line>LYS CA 257</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1IOM</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1IOMA</entryIDChain>
<sequence>EKLARLVAEKHGHS</sequence>
<secondary-structure>HHHHHHHHHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 2130 CA GLU A 272 -45.770 -5.692 17.956 1.00 12.67 C </line>
<line>ATOM 2139 CA LYS A 273 -45.824 -4.780 21.653 1.00 14.02 C </line>
<line>ATOM 2145 CA LEU A 274 -42.107 -4.004 21.853 1.00 12.10 C </line>
<line>ATOM 2153 CA ALA A 275 -42.280 -1.988 18.631 1.00 12.91 C </line>
<line>ATOM 2158 CA ARG A 276 -45.034 0.118 20.178 1.00 16.78 C </line>
<line>ATOM 2169 CA LEU A 277 -42.919 0.804 23.268 1.00 16.82 C </line>
<line>ATOM 2177 CA VAL A 278 -40.035 1.994 21.089 1.00 16.54 C </line>
<line>ATOM 2184 CA ALA A 279 -42.335 4.187 18.989 1.00 17.84 C </line>
<line>ATOM 2189 CA GLU A 280 -43.831 5.742 22.116 1.00 23.29 C </line>
<line>ATOM 2198 CA LYS A 281 -40.389 6.646 23.470 1.00 23.04 C </line>
<line>ATOM 2207 CA HIS A 282 -38.467 7.546 20.312 1.00 21.36 C </line>
<line>ATOM 2217 CA GLY A 283 -41.369 8.702 18.158 1.00 22.36 C </line>
<line>ATOM 2221 CA HIS A 284 -43.559 7.248 15.426 1.00 20.74 C </line>
<line>ATOM 2231 CA SER A 285 -41.714 7.055 12.123 1.00 18.74 C </line>
</atom-coordinate>
<distance-map>
<line> SER HIS GLY HIS LYS GLU ALA VAL LEU ARG ALA LEU LYS GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 14.59 13.37 15.05 15.30 14.55 12.32 10.51 10.09 8.86 6.26 5.13 5.61 3.81 </line>
<line>LYS CA 15.74 13.73 14.62 14.42 12.78 10.72 9.98 8.93 6.50 5.18 5.43 3.80 </line>
<line>LEU CA 14.74 13.04 13.25 12.21 10.91 9.90 8.68 6.39 5.08 5.33 3.80 </line>
<line>ALA CA 11.16 9.86 10.74 10.40 10.08 8.62 6.19 5.19 5.45 3.80 </line>
<line>ARG CA 11.14 8.69 9.55 9.92 8.66 6.07 5.03 5.42 3.81 </line>
<line>LEU CA 12.84 10.17 9.53 8.60 6.37 5.15 5.49 3.81 </line>
<line>VAL CA 10.43 8.49 7.44 5.82 5.24 5.43 3.81 </line>
<line>ALA CA 7.47 4.85 4.69 5.29 5.47 3.80 </line>
<line>GLU CA 10.30 6.86 5.52 5.94 3.81 </line>
<line>LYS CA 11.43 8.67 5.78 3.80 </line>
<line>HIS CA 8.82 7.06 3.79 </line>
<line>GLY CA 6.27 3.79 </line>
<line>HIS CA 3.79 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>GLU CA 427</line>
<line>LYS CA 331</line>
<line>LEU CA 396</line>
<line>ALA CA 424</line>
<line>ARG CA 335</line>
<line>LEU CA 277</line>
<line>VAL CA 321</line>
<line>ALA CA 305</line>
<line>GLU CA 215</line>
<line>LYS CA 196</line>
<line>HIS CA 233</line>
<line>GLY CA 211</line>
<line>HIS CA 267</line>
<line>SER CA 290</line>
</n14>
</entryChain>
<parallel>
<x>55.4119987487793</x>
<y>30.82699966430664</y>
<z>91.25599670410156</z>
</parallel>
<rotation>
<x>-0.6019999980926514</x>
<y>0.42800000309944153</y>
<z>-0.6740000247955322</z>
<x>-0.7649999856948853</x>
<y>-0.5519999861717224</y>
<z>0.3319999873638153</z>
<x>-0.23000000417232513</x>
<y>0.7160000205039978</y>
<z>0.6600000262260437</z>
</rotation>
<rmsd>3.02231502532959</rmsd>
<dmax>4.095500946044922</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1AJ8</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1AJ8B</entryIDChain>
<sequence>EYVSH-NRIIR</sequence>
<secondary-structure>HGGGG- </secondary-structure>
<atom-coordinate>
<line>ATOM 5715 CA GLU B 347 26.929 48.814 84.750 1.00 20.74 C </line>
<line>ATOM 5724 CA TYR B 348 29.006 46.445 82.649 1.00 20.10 C </line>
<line>ATOM 5736 CA VAL B 349 27.784 47.515 79.223 1.00 25.23 C </line>
<line>ATOM 5743 CA SER B 350 28.376 51.160 80.154 1.00 27.16 C </line>
<line>ATOM 5749 CA HIS B 351 32.028 50.312 79.454 1.00 28.22 C </line>
<line>ATOM 5759 CA ASN B 352 31.578 47.112 77.470 1.00 20.15 C </line>
<line>ATOM 5767 CA ARG B 353 34.188 44.580 76.489 1.00 15.97 C </line>
<line>ATOM 5778 CA ILE B 354 33.202 41.160 75.177 1.00 13.94 C </line>
<line>ATOM 5786 CA ILE B 355 33.910 38.429 77.729 1.00 12.87 C </line>
<line>ATOM 5794 CA ARG B 356 35.933 35.820 75.880 1.00 15.54 C </line>
</atom-coordinate>
<distance-map>
<line> ARG ILE ILE ARG ASN HIS SER VAL TYR GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 18.13 14.35 13.77 11.78 8.80 7.50 5.36 5.74 3.79 </line>
<line>TYR CA 14.38 10.61 10.07 8.26 5.82 5.86 5.37 3.79 </line>
<line>VAL CA 14.64 11.06 9.28 7.56 4.20 5.09 3.81 </line>
<line>SER CA 17.63 14.09 12.17 9.51 5.82 3.81 </line>
<line>HIS CA 15.43 12.15 10.17 6.81 3.79 </line>
<line>ASN CA 12.21 8.99 6.58 3.77 </line>
<line>ARG CA 8.95 6.28 3.79 </line>
<line>ILE CA 6.04 3.80 </line>
<line>ILE CA 3.78 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>GLU CA 402</line>
<line>TYR CA 392</line>
<line>VAL CA 351</line>
<line>SER CA 284</line>
<line>HIS CA 226</line>
<line>ASN CA 250</line>
<line>ARG CA 222</line>
<line>ILE CA 221</line>
<line>ILE CA 246</line>
<line>ARG CA 182</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1IOM</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1IOMA</entryIDChain>
<sequence>EYQELDNRLLR</sequence>
<secondary-structure>HHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 2726 CA GLU A 347 -28.057 -32.179 16.211 1.00 7.63 C </line>
<line>ATOM 2735 CA TYR A 348 -27.802 -33.767 12.778 1.00 6.60 C </line>
<line>ATOM 2747 CA GLN A 349 -24.310 -35.010 13.598 1.00 9.21 C </line>
<line>ATOM 2756 CA GLU A 350 -25.512 -36.428 16.922 1.00 10.78 C </line>
<line>ATOM 2765 CA LEU A 351 -28.718 -38.108 15.756 1.00 10.29 C </line>
<line>ATOM 2773 CA ASP A 352 -28.190 -38.986 12.096 1.00 9.21 C </line>
<line>ATOM 2781 CA ASN A 353 -25.018 -37.822 10.317 1.00 10.27 C </line>
<line>ATOM 2789 CA ARG A 354 -25.822 -39.603 7.047 1.00 10.18 C </line>
<line>ATOM 2800 CA LEU A 355 -24.647 -38.457 3.625 1.00 10.83 C </line>
<line>ATOM 2808 CA LEU A 356 -27.720 -37.273 1.712 1.00 13.19 C </line>
<line>ATOM 2816 CA ARG A 357 -28.267 -39.340 -1.430 1.00 17.40 C </line>
</atom-coordinate>
<distance-map>
<line> ARG LEU LEU ARG ASN ASP LEU GLU GLN TYR GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 19.04 15.37 14.47 12.00 8.71 7.96 5.98 5.00 5.37 3.79 </line>
<line>TYR CA 15.27 11.61 10.76 8.42 5.50 5.28 5.34 5.43 3.80 </line>
<line>GLN CA 16.13 12.57 10.56 8.14 4.38 5.75 5.80 3.81 </line>
<line>GLU CA 18.78 15.39 13.48 10.38 6.77 6.08 3.80 </line>
<line>LEU CA 17.24 14.10 12.80 9.30 6.58 3.80 </line>
<line>ASP CA 13.53 10.53 9.20 5.61 3.82 </line>
<line>ASN CA 12.28 9.04 6.73 3.81 </line>
<line>ARG CA 8.83 6.12 3.80 </line>
<line>LEU CA 6.28 3.81 </line>
<line>LEU CA 3.80 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>GLU CA 421</line>
<line>TYR CA 398</line>
<line>GLN CA 365</line>
<line>GLU CA 287</line>
<line>LEU CA 238</line>
<line>ASP CA 262</line>
<line>ASN CA 297</line>
<line>ARG CA 239</line>
<line>LEU CA 220</line>
<line>LEU CA 228</line>
<line>ARG CA 169</line>
</n14>
</entryChain>
<parallel>
<x>56.62200164794922</x>
<y>83.55899810791016</y>
<z>67.38899993896484</z>
</parallel>
<rotation>
<x>-0.6539999842643738</x>
<y>-0.06199999898672104</y>
<z>-0.7540000081062317</z>
<x>-0.656000018119812</x>
<y>-0.44999998807907104</y>
<z>0.6060000061988831</z>
<x>-0.37700000405311584</x>
<y>0.890999972820282</y>
<z>0.2540000081062317</z>
</rotation>
<rmsd>0.9895219802856445</rmsd>
<dmax>2.0784668922424316</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1IOM</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1IOMA</entryIDChain>
<sequence>PTEGD-ISREA</sequence>
<secondary-structure> - HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 856 CA PRO A 107 -5.758 -23.075 11.521 1.00 9.54 C </line>
<line>ATOM 863 CA THR A 108 -8.021 -26.077 12.176 1.00 8.74 C </line>
<line>ATOM 870 CA GLU A 109 -10.783 -25.096 9.755 1.00 6.95 C </line>
<line>ATOM 879 CA GLY A 110 -11.639 -28.681 8.855 1.00 8.36 C </line>
<line>ATOM 883 CA ASP A 111 -12.044 -30.036 12.393 1.00 8.50 C </line>
<line>ATOM 891 CA ILE A 112 -15.617 -31.324 12.674 1.00 9.11 C </line>
<line>ATOM 899 CA SER A 113 -15.600 -33.091 16.031 1.00 9.12 C </line>
<line>ATOM 905 CA ARG A 114 -18.762 -32.195 17.969 1.00 8.55 C </line>
<line>ATOM 916 CA GLU A 115 -16.765 -29.981 20.322 1.00 9.22 C </line>
<line>ATOM 925 CA ALA A 116 -14.970 -28.237 17.445 1.00 8.36 C </line>
</atom-coordinate>
<distance-map>
<line> ALA GLU ARG SER ILE ASP GLY GLU THR PRO </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>PRO CA 12.11 15.69 17.14 14.75 12.91 9.42 8.55 5.70 3.82 </line>
<line>THR CA 8.98 12.57 13.65 11.02 9.25 5.65 5.56 3.80 </line>
<line>GLU CA 9.30 13.09 13.47 11.25 8.41 5.74 3.79 </line>
<line>GLY CA 9.22 12.63 12.09 9.31 6.12 3.81 </line>
<line>ASP CA 6.11 9.23 8.99 5.93 3.81 </line>
<line>ILE CA 5.72 7.85 6.22 3.79 </line>
<line>SER CA 5.09 5.43 3.82 </line>
<line>ARG CA 5.51 3.80 </line>
<line>GLU CA 3.81 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>PRO CA 163</line>
<line>THR CA 190</line>
<line>GLU CA 260</line>
<line>GLY CA 252</line>
<line>ASP CA 240</line>
<line>ILE CA 307</line>
<line>SER CA 242</line>
<line>ARG CA 283</line>
<line>GLU CA 250</line>
<line>ALA CA 290</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AJ8</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1AJ8B</entryIDChain>
<sequence>DSGDIPVTPEE</sequence>
<secondary-structure> HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 3828 CA ASP B 110 9.139 46.057 70.739 1.00 42.34 C </line>
<line>ATOM 3836 CA SER B 111 12.578 46.402 72.370 1.00 41.57 C </line>
<line>ATOM 3842 CA GLY B 112 13.118 42.653 72.641 1.00 38.04 C </line>
<line>ATOM 3846 CA ASP B 113 15.943 42.645 70.093 1.00 37.06 C </line>
<line>ATOM 3854 CA ILE B 114 17.503 46.030 70.916 1.00 34.53 C </line>
<line>ATOM 3862 CA PRO B 115 21.190 45.945 71.973 1.00 30.99 C </line>
<line>ATOM 3869 CA VAL B 116 21.511 46.591 75.701 1.00 28.78 C </line>
<line>ATOM 3876 CA THR B 117 22.410 50.091 76.900 1.00 29.38 C </line>
<line>ATOM 3883 CA PRO B 118 22.359 51.359 80.526 1.00 33.53 C </line>
<line>ATOM 3890 CA GLU B 119 19.204 53.433 80.164 1.00 35.63 C </line>
<line>ATOM 3899 CA GLU B 120 17.302 50.813 78.174 1.00 27.10 C </line>
</atom-coordinate>
<distance-map>
<line> GLU GLU PRO THR VAL PRO ILE ASP GLY SER ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 12.02 15.64 17.28 15.18 13.34 12.11 8.37 7.64 5.57 3.82 </line>
<line>SER CA 8.69 12.41 13.67 11.44 9.54 8.63 5.15 5.53 3.80 </line>
<line>GLY CA 10.71 14.49 14.95 12.64 9.76 8.74 5.80 3.80 </line>
<line>ASP CA 11.57 15.11 15.03 11.98 8.83 6.48 3.82 </line>
<line>ILE CA 8.69 11.97 12.01 8.74 6.27 3.84 </line>
<line>PRO CA 8.79 11.27 10.19 6.55 3.80 </line>
<line>VAL CA 6.45 8.49 6.84 3.81 </line>
<line>THR CA 5.31 5.67 3.84 </line>
<line>PRO CA 5.60 3.79 </line>
<line>GLU CA 3.80 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>ASP CA 189</line>
<line>SER CA 248</line>
<line>GLY CA 287</line>
<line>ASP CA 239</line>
<line>ILE CA 246</line>
<line>PRO CA 278</line>
<line>VAL CA 356</line>
<line>THR CA 323</line>
<line>PRO CA 331</line>
<line>GLU CA 280</line>
<line>GLU CA 310</line>
</n14>
</entryChain>
<parallel>
<x>-29.097999572753906</x>
<y>-75.17500305175781</y>
<z>-61.06399917602539</z>
</parallel>
<rotation>
<x>-0.5490000247955322</x>
<y>-0.8230000138282776</y>
<z>-0.14399999380111694</z>
<x>0.335999995470047</x>
<y>-0.375</y>
<z>0.8640000224113464</z>
<x>-0.7649999856948853</x>
<y>0.4259999990463257</y>
<z>0.4819999933242798</z>
</rotation>
<rmsd>1.3077640533447266</rmsd>
<dmax>2.1157948970794678</dmax>
</indel>