NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1AKIA-2G4NF
confEVID 1AKIA-2G4NF
pdbIDA 1AKI
pdbIDB 2G4N
pdbChainA A
pdbChainB F
identity 0.354299992322922
indelSize 3
alignment <alignment>
<seq1>KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL</seq1>
<seq2>EQLTKCEVFREL--KDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNN-DSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDK-VGINYWLAHKALCSEK-LDQWLCEK--</seq2>
<ss_1> HHHHHHHHHH GGG HHHHHHHHHH EEEEE EEEEE EE GGGG HHHHHHHHHHH GGGG HHHHH GGG </ss_1>
<ss_2> HHHHHHH --GGG GGG HHHHHHHHHH EEEEE - EEEEE EE GGGG HHHHHHHHHHHH - GGG HHHH -GGGG --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>IVQNN-DSTEY</sequence>
<secondary-structure>EEEE - EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 5205 CA ILE F 41 55.377 19.946 112.685 1.00 37.59 C </line>
<line>ATOM 5213 CA VAL F 42 57.447 20.019 115.877 1.00 37.52 C </line>
<line>ATOM 5220 CA GLN F 43 59.735 17.071 116.847 1.00 40.70 C </line>
<line>ATOM 5229 CA ASN F 44 61.110 16.263 120.380 1.00 46.91 C </line>
<line>ATOM 5237 CA ASN F 45 63.107 13.101 120.092 1.00 48.98 C </line>
<line>ATOM 5245 CA ASP F 46 60.585 10.573 121.273 1.00 48.65 C </line>
<line>ATOM 5253 CA SER F 47 57.509 12.362 119.810 1.00 43.83 C </line>
<line>ATOM 5259 CA THR F 48 56.163 14.628 117.058 1.00 40.01 C </line>
<line>ATOM 5266 CA GLU F 49 53.262 17.054 117.116 1.00 39.86 C </line>
<line>ATOM 5275 CA TYR F 50 51.080 17.791 114.131 1.00 37.25 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLU THR SER ASP ASN ASN GLN VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 5.02 5.70 6.93 10.62 13.74 12.71 10.28 6.68 3.81 </line>
<line>VAL CA 6.97 5.28 5.67 8.61 11.32 9.88 6.91 3.86 </line>
<line>GLN CA 9.10 6.48 4.33 5.99 7.91 6.14 3.88 </line>
<line>ASN CA 11.92 8.54 6.18 5.34 5.78 3.75 </line>
<line>ASN CA 14.22 11.02 7.73 5.65 3.76 </line>
<line>ASP CA 13.91 10.63 7.33 3.85 </line>
<line>SER CA 10.15 6.88 3.81 </line>
<line>THR CA 6.66 3.78 </line>
<line>GLU CA 3.77 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ILE CA 296</line>
<line>VAL CA 266</line>
<line>GLN CA 210</line>
<line>ASN CA 158</line>
<line>ASN CA 136</line>
<line>ASP CA 177</line>
<line>SER CA 249</line>
<line>THR CA 309</line>
<line>GLU CA 406</line>
<line>TYR CA 445</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AKI</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1AKIA</entryIDChain>
<sequence>TNRNTDGSTDY</sequence>
<secondary-structure>EEEE EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 333 CA THR A 43 24.441 27.490 -11.476 1.00 17.73 C </line>
<line>ATOM 340 CA ASN A 44 20.640 27.497 -11.108 1.00 19.51 C </line>
<line>ATOM 348 CA ARG A 45 18.303 30.363 -12.015 1.00 18.37 C </line>
<line>ATOM 359 CA ASN A 46 15.304 31.071 -9.782 1.00 20.10 C </line>
<line>ATOM 367 CA THR A 47 11.871 32.654 -10.246 1.00 19.12 C </line>
<line>ATOM 374 CA ASP A 48 12.885 35.716 -8.168 1.00 17.33 C </line>
<line>ATOM 382 CA GLY A 49 15.744 36.702 -10.546 1.00 17.27 C </line>
<line>ATOM 386 CA SER A 50 18.435 35.225 -8.279 1.00 14.28 C </line>
<line>ATOM 392 CA THR A 51 20.970 32.557 -9.202 1.00 13.82 C </line>
<line>ATOM 399 CA ASP A 52 22.528 29.900 -6.959 1.00 13.43 C </line>
<line>ATOM 407 CA TYR A 53 26.278 29.604 -7.450 1.00 13.61 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASP THR SER GLY ASP THR ASN ARG ASN THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 4.90 5.47 6.55 10.30 12.70 14.57 13.64 9.96 6.80 3.82 </line>
<line>ASN CA 7.04 5.15 5.42 8.52 10.44 11.68 10.21 6.56 3.81 </line>
<line>ARG CA 9.22 6.61 4.45 6.13 6.99 8.53 7.05 3.81 </line>
<line>ASN CA 11.31 7.84 5.89 5.41 5.70 5.48 3.81 </line>
<line>THR CA 14.99 11.49 9.16 7.32 5.61 3.84 </line>
<line>ASP CA 14.74 11.33 8.74 5.57 3.85 </line>
<line>GLY CA 13.07 10.25 6.80 3.82 </line>
<line>SER CA 9.68 6.84 3.79 </line>
<line>THR CA 6.32 3.81 </line>
<line>ASP CA 3.79 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>THR CA 290</line>
<line>ASN CA 269</line>
<line>ARG CA 213</line>
<line>ASN CA 202</line>
<line>THR CA 140</line>
<line>ASP CA 169</line>
<line>GLY CA 198</line>
<line>SER CA 265</line>
<line>THR CA 318</line>
<line>ASP CA 410</line>
<line>TYR CA 426</line>
</n14>
</entryChain>
<parallel>
<x>40.66600036621094</x>
<y>-16.198999404907227</y>
<z>128.3350067138672</z>
</parallel>
<rotation>
<x>-0.8270000219345093</x>
<y>0.07199999690055847</y>
<z>-0.5580000281333923</z>
<x>-0.1589999943971634</x>
<y>-0.9810000061988831</y>
<z>0.10899999737739563</z>
<x>-0.5389999747276306</x>
<y>0.17800000309944153</y>
<z>0.8230000138282776</z>
</rotation>
<rmsd>1.0667940378189087</rmsd>
<dmax>2.0807559490203857</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>KILDK-VGINY</sequence>
<secondary-structure>HHHH - GGG</secondary-structure>
<atom-coordinate>
<line>ATOM 5630 CA LYS F 94 38.396 13.940 122.868 1.00 39.73 C </line>
<line>ATOM 5639 CA ILE F 95 41.516 15.589 124.251 1.00 36.30 C </line>
<line>ATOM 5647 CA LEU F 96 39.496 18.085 126.226 1.00 36.26 C </line>
<line>ATOM 5655 CA ASP F 97 37.175 15.237 127.305 1.00 38.33 C </line>
<line>ATOM 5663 CA LYS F 98 40.090 13.237 128.636 1.00 37.69 C </line>
<line>ATOM 5672 CA VAL F 99 42.854 15.597 129.808 1.00 38.35 C </line>
<line>ATOM 5679 CA GLY F 100 41.256 19.059 129.215 1.00 37.02 C </line>
<line>ATOM 5683 CA ILE F 101 42.672 22.345 127.896 1.00 38.18 C </line>
<line>ATOM 5691 CA ASN F 102 45.947 21.999 129.829 1.00 39.98 C </line>
<line>ATOM 5699 CA TYR F 103 47.150 19.720 127.022 1.00 40.59 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASN ILE GLY VAL LYS ASP LEU ILE LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 11.28 13.05 10.69 8.64 8.41 6.05 4.78 5.45 3.79 </line>
<line>ILE CA 7.52 9.58 7.76 6.06 5.72 5.18 5.32 3.77 </line>
<line>LEU CA 7.87 8.36 5.57 3.60 5.50 5.45 3.83 </line>
<line>ASP CA 10.94 11.36 9.00 5.91 6.22 3.78 </line>
<line>LYS CA 9.72 10.61 9.50 5.97 3.82 </line>
<line>VAL CA 6.57 7.11 7.02 3.86 </line>
<line>GLY CA 6.32 5.57 3.81 </line>
<line>ILE CA 5.26 3.82 </line>
<line>ASN CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>LYS CA 310</line>
<line>ILE CA 351</line>
<line>LEU CA 311</line>
<line>ASP CA 226</line>
<line>LYS CA 207</line>
<line>VAL CA 236</line>
<line>GLY CA 273</line>
<line>ILE CA 353</line>
<line>ASN CA 276</line>
<line>TYR CA 345</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AKI</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1AKIA</entryIDChain>
<sequence>KIVSDGNGMNA</sequence>
<secondary-structure>HHH GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 740 CA LYS A 97 28.811 33.263 7.379 1.00 16.43 C </line>
<line>ATOM 749 CA ILE A 98 25.520 31.693 6.266 1.00 16.36 C </line>
<line>ATOM 757 CA VAL A 99 25.488 29.009 8.955 1.00 18.71 C </line>
<line>ATOM 764 CA SER A 100 26.297 31.529 11.650 1.00 23.81 C </line>
<line>ATOM 770 CA ASP A 101 23.162 33.495 10.650 1.00 26.98 C </line>
<line>ATOM 778 CA GLY A 102 20.622 31.656 12.823 1.00 30.67 C </line>
<line>ATOM 782 CA ASN A 103 19.076 28.799 10.848 1.00 25.22 C </line>
<line>ATOM 790 CA GLY A 104 22.177 26.567 10.860 1.00 19.51 C </line>
<line>ATOM 794 CA MET A 105 22.278 24.370 7.724 1.00 16.07 C </line>
<line>ATOM 802 CA ASN A 106 18.557 24.898 7.103 1.00 18.58 C </line>
<line>ATOM 810 CA ALA A 107 19.824 27.514 4.634 1.00 18.74 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ASN MET GLY ASN GLY ASP SER VAL ILE LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 11.02 13.24 11.04 10.05 11.26 9.96 6.53 5.25 5.62 3.81 </line>
<line>ILE CA 7.25 9.77 8.14 7.65 8.42 8.18 5.29 5.44 3.80 </line>
<line>VAL CA 7.28 8.27 5.77 4.53 6.69 6.76 5.33 3.78 </line>
<line>SER CA 10.36 11.16 9.10 6.50 7.76 5.80 3.83 </line>
<line>ASP CA 9.12 10.38 9.62 7.00 6.23 3.82 </line>
<line>GLY CA 9.21 9.09 9.05 5.67 3.80 </line>
<line>ASN CA 6.39 5.43 6.30 3.82 </line>
<line>GLY CA 6.72 5.48 3.83 </line>
<line>MET CA 5.05 3.81 </line>
<line>ASN CA 3.81 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>LYS CA 311</line>
<line>ILE CA 372</line>
<line>VAL CA 344</line>
<line>SER CA 242</line>
<line>ASP CA 225</line>
<line>GLY CA 181</line>
<line>ASN CA 211</line>
<line>GLY CA 284</line>
<line>MET CA 374</line>
<line>ASN CA 300</line>
<line>ALA CA 358</line>
</n14>
</entryChain>
<parallel>
<x>16.33099937438965</x>
<y>-13.204999923706055</y>
<z>117.73400115966797</z>
</parallel>
<rotation>
<x>-0.7850000262260437</x>
<y>0.13099999725818634</y>
<z>-0.6060000061988831</z>
<x>-0.041999999433755875</x>
<y>-0.9860000014305115</y>
<z>-0.1589999943971634</z>
<x>-0.6179999709129333</x>
<y>-0.10000000149011612</y>
<z>0.7799999713897705</z>
</rotation>
<rmsd>1.010686993598938</rmsd>
<dmax>2.151362895965576</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>LCSEK-LDQWL</sequence>
<secondary-structure> -GGGG </secondary-structure>
<atom-coordinate>
<line>ATOM 5762 CA LEU F 110 49.413 33.080 127.746 1.00 37.41 C </line>
<line>ATOM 5770 CA CYS F 111 45.743 32.564 126.954 1.00 36.96 C </line>
<line>ATOM 5776 CA SER F 112 43.816 32.690 130.254 1.00 32.33 C </line>
<line>ATOM 5782 CA GLU F 113 44.083 36.550 130.540 1.00 31.11 C </line>
<line>ATOM 5791 CA LYS F 114 43.902 39.584 128.332 1.00 31.21 C </line>
<line>ATOM 5800 CA LEU F 115 41.570 38.167 125.655 1.00 32.58 C </line>
<line>ATOM 5808 CA ASP F 116 40.250 41.187 123.740 1.00 37.80 C </line>
<line>ATOM 5816 CA GLN F 117 43.484 41.292 121.628 1.00 40.53 C </line>
<line>ATOM 5825 CA TRP F 118 42.490 37.933 120.077 1.00 41.93 C </line>
<line>ATOM 5839 CA LEU F 119 39.177 39.086 118.690 1.00 43.75 C </line>
</atom-coordinate>
<distance-map>
<line> LEU TRP GLN ASP LEU LYS GLU SER CYS LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 14.93 11.41 11.83 12.87 9.58 8.54 6.95 6.15 3.79 </line>
<line>CYS CA 12.41 9.31 10.47 10.72 7.11 7.39 5.61 3.82 </line>
<line>SER CA 14.01 11.52 12.19 11.28 7.50 7.16 3.88 </line>
<line>GLU CA 13.07 10.67 10.11 9.08 5.73 3.76 </line>
<line>LYS CA 10.75 8.54 6.93 6.08 3.82 </line>
<line>LEU CA 7.42 5.66 5.44 3.81 </line>
<line>ASP CA 5.57 5.39 3.86 </line>
<line>GLN CA 5.66 3.83 </line>
<line>TRP CA 3.77 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>LEU CA 247</line>
<line>CYS CA 297</line>
<line>SER CA 251</line>
<line>GLU CA 196</line>
<line>LYS CA 176</line>
<line>LEU CA 235</line>
<line>ASP CA 180</line>
<line>GLN CA 214</line>
<line>TRP CA 294</line>
<line>LEU CA 252</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AKI</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1AKIA</entryIDChain>
<sequence>RCKGTDVQAWI</sequence>
<secondary-structure> GGG </secondary-structure>
<atom-coordinate>
<line>ATOM 874 CA ARG A 114 18.156 14.836 2.042 1.00 21.43 C </line>
<line>ATOM 885 CA CYS A 115 20.843 15.041 4.708 1.00 15.08 C </line>
<line>ATOM 891 CA LYS A 116 19.332 16.085 8.025 1.00 19.14 C </line>
<line>ATOM 900 CA GLY A 117 18.558 13.126 10.267 1.00 29.06 C </line>
<line>ATOM 904 CA THR A 118 20.473 10.578 8.171 1.00 22.31 C </line>
<line>ATOM 911 CA ASP A 119 23.768 8.830 8.756 1.00 22.61 C </line>
<line>ATOM 919 CA VAL A 120 25.886 11.637 7.306 1.00 20.10 C </line>
<line>ATOM 926 CA GLN A 121 29.021 9.783 8.389 1.00 21.12 C </line>
<line>ATOM 935 CA ALA A 122 28.390 7.548 5.311 1.00 19.46 C </line>
<line>ATOM 940 CA TRP A 123 29.703 10.502 3.283 1.00 16.76 C </line>
<line>ATOM 954 CA ILE A 124 33.186 10.292 4.801 1.00 16.82 C </line>
</atom-coordinate>
<distance-map>
<line> ILE TRP ALA GLN VAL ASP THR GLY LYS CYS ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 15.94 12.40 12.98 13.56 9.88 10.61 7.81 8.41 6.22 3.79 </line>
<line>CYS CA 13.23 10.06 10.65 10.40 6.62 7.97 5.66 6.31 3.79 </line>
<line>LYS CA 15.36 12.70 12.74 11.56 7.95 8.54 5.63 3.79 </line>
<line>GLY CA 15.87 13.41 12.34 11.14 8.04 6.92 3.81 </line>
<line>THR CA 13.16 10.44 8.95 8.59 5.58 3.78 </line>
<line>ASP CA 10.32 8.24 5.91 5.35 3.80 </line>
<line>VAL CA 7.83 5.66 5.19 3.80 </line>
<line>GLN CA 5.52 5.20 3.86 </line>
<line>ALA CA 5.55 3.82 </line>
<line>TRP CA 3.81 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>ARG CA 249</line>
<line>CYS CA 303</line>
<line>LYS CA 271</line>
<line>GLY CA 192</line>
<line>THR CA 210</line>
<line>ASP CA 194</line>
<line>VAL CA 301</line>
<line>GLN CA 261</line>
<line>ALA CA 226</line>
<line>TRP CA 317</line>
<line>ILE CA 285</line>
</n14>
</entryChain>
<parallel>
<x>21.450000762939453</x>
<y>24.559999465942383</y>
<z>120.0790023803711</z>
</parallel>
<rotation>
<x>-0.6159999966621399</x>
<y>0.17299999296665192</y>
<z>-0.7689999938011169</z>
<x>-0.32199999690055847</x>
<y>-0.9459999799728394</y>
<z>0.04500000178813934</z>
<x>-0.718999981880188</x>
<y>0.2750000059604645</y>
<z>0.6380000114440918</z>
</rotation>
<rmsd>1.1540089845657349</rmsd>
<dmax>1.7131949663162231</dmax>
</indel>