NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1ALCA-1IOTA
confEVID 1ALCA-1IOTA
pdbIDA 1ALC
pdbIDB 1IOT
pdbChainA A
pdbChainB A
identity 0.346500009298325
indelSize 3
alignment <alignment>
<seq1>KQFTKCELSQNL--YDIDGYGRIALPELICTMFHTSGYDTQAIVEND-ESTEYGLFQISNALWCKSSQSPQSRNICDITCDKFLDDDITDDIMCAKKILD-IKGIDYWIAHKALCTE-KLEQWLCEK--</seq1>
<seq2>KVFGRCELAAALKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL</seq2>
<ss_1> HHHHHHH --GGG GGG HHHHHHHHHH EEE - EEEEE EE GGGGG HHHHHHHHHHHH- GGG HHHHHH - GGG --</ss_1>
<ss_2> HHHHHHHHHH GGG HHHHHHHHHH EEEEE EEEEE EE GGGG HHHHHHHHHHH GGGG HHHHH GGGGG </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1ALC</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1ALCA</entryIDChain>
<sequence>IVEND-ESTEY</sequence>
<secondary-structure>EE - EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 321 CA ILE A 41 3.033 16.578 15.239 1.00 20.64 C </line>
<line>ATOM 329 CA VAL A 42 1.788 13.721 13.058 1.00 18.44 C </line>
<line>ATOM 336 CA GLU A 43 -0.614 10.951 14.005 1.00 26.79 C </line>
<line>ATOM 345 CA ASN A 44 -0.039 7.866 11.845 1.00 71.02 C </line>
<line>ATOM 353 CA ASP A 45 -1.951 4.634 12.543 1.00 56.46 C </line>
<line>ATOM 361 CA GLU A 46 -2.475 4.928 16.283 1.00 35.34 C </line>
<line>ATOM 370 CA SER A 47 0.972 6.309 17.042 1.00 21.22 C </line>
<line>ATOM 376 CA THR A 48 2.463 9.719 16.434 1.00 17.23 C </line>
<line>ATOM 383 CA GLU A 49 5.707 11.291 15.290 1.00 4.32 C </line>
<line>ATOM 392 CA TYR A 50 7.086 14.432 16.903 1.00 7.69 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLU THR SER GLU ASP ASN GLU VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 4.88 5.92 6.99 10.63 12.93 13.22 9.84 6.82 3.80 </line>
<line>VAL CA 6.58 5.12 5.28 8.45 10.29 9.84 6.25 3.79 </line>
<line>GLU CA 8.93 6.46 4.11 5.77 6.70 6.62 3.81 </line>
<line>ASN CA 10.93 7.52 5.55 5.52 5.85 3.82 </line>
<line>ASP CA 14.02 10.51 7.78 5.62 3.79 </line>
<line>GLU CA 13.50 10.41 6.88 3.79 </line>
<line>SER CA 10.17 7.09 3.77 </line>
<line>THR CA 6.62 3.78 </line>
<line>GLU CA 3.79 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ILE CA 286</line>
<line>VAL CA 253</line>
<line>GLU CA 196</line>
<line>ASN CA 171</line>
<line>ASP CA 133</line>
<line>GLU CA 160</line>
<line>SER CA 233</line>
<line>THR CA 295</line>
<line>GLU CA 388</line>
<line>TYR CA 428</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1IOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1IOTA</entryIDChain>
<sequence>TNRNTDGSTDY</sequence>
<secondary-structure>EEEE EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 333 CA THR A 43 10.567 16.020 17.757 1.00 17.61 C </line>
<line>ATOM 340 CA ASN A 44 12.666 18.958 18.875 1.00 21.79 C </line>
<line>ATOM 348 CA ARG A 45 14.957 19.103 21.865 1.00 22.74 C </line>
<line>ATOM 359 CA ASN A 46 15.072 22.180 24.046 1.00 28.17 C </line>
<line>ATOM 367 CA THR A 47 17.952 23.861 25.865 1.00 32.18 C </line>
<line>ATOM 374 CA ASP A 48 16.595 22.893 29.273 1.00 25.42 C </line>
<line>ATOM 382 CA GLY A 49 16.972 19.252 28.213 1.00 22.61 C </line>
<line>ATOM 386 CA SER A 50 13.278 18.612 27.661 1.00 19.22 C </line>
<line>ATOM 392 CA THR A 51 11.882 17.623 24.228 1.00 17.83 C </line>
<line>ATOM 399 CA ASP A 52 8.739 18.552 22.236 1.00 16.87 C </line>
<line>ATOM 407 CA TYR A 53 6.739 15.734 20.639 1.00 17.02 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASP THR SER GLY ASP THR ASN ARG ASN THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 4.80 5.46 6.80 10.59 12.68 14.70 13.48 9.89 6.76 3.78 </line>
<line>ASN CA 6.97 5.18 5.57 8.81 10.29 11.79 10.04 6.55 3.77 </line>
<line>ARG CA 8.97 6.25 4.15 6.05 6.66 8.48 6.90 3.77 </line>
<line>ASN CA 11.07 7.52 5.57 5.39 5.44 5.49 3.80 </line>
<line>THR CA 14.80 11.24 8.86 7.25 5.26 3.79 </line>
<line>ASP CA 14.93 11.41 8.69 5.65 3.81 </line>
<line>GLY CA 13.21 10.20 6.67 3.79 </line>
<line>SER CA 10.02 7.07 3.84 </line>
<line>THR CA 6.55 3.84 </line>
<line>ASP CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>THR CA 296</line>
<line>ASN CA 274</line>
<line>ARG CA 224</line>
<line>ASN CA 206</line>
<line>THR CA 141</line>
<line>ASP CA 157</line>
<line>GLY CA 189</line>
<line>SER CA 258</line>
<line>THR CA 317</line>
<line>ASP CA 403</line>
<line>TYR CA 431</line>
</n14>
</entryChain>
<parallel>
<x>-13.770999908447266</x>
<y>-10.11299991607666</y>
<z>-9.008000373840332</z>
</parallel>
<rotation>
<x>-0.9829999804496765</x>
<y>-0.12200000137090683</y>
<z>-0.13600000739097595</z>
<x>0.17900000512599945</x>
<y>-0.47600001096725464</y>
<z>-0.8610000014305115</z>
<x>0.03999999910593033</x>
<y>-0.8709999918937683</y>
<z>0.48899999260902405</z>
</rotation>
<rmsd>0.5821170210838318</rmsd>
<dmax>1.2817280292510986</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1ALC</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1ALCA</entryIDChain>
<sequence>KKILD-IKGID</sequence>
<secondary-structure>HHHHH- GG</secondary-structure>
<atom-coordinate>
<line>ATOM 729 CA LYS A 93 22.230 10.368 16.425 1.00 15.35 C </line>
<line>ATOM 738 CA LYS A 94 20.851 7.282 18.180 1.00 18.77 C </line>
<line>ATOM 747 CA ILE A 95 18.563 6.552 15.236 1.00 9.62 C </line>
<line>ATOM 755 CA LEU A 96 21.440 7.015 12.792 1.00 13.17 C </line>
<line>ATOM 763 CA ASP A 97 23.677 4.690 14.820 1.00 15.16 C </line>
<line>ATOM 771 CA ILE A 98 21.101 1.921 15.130 1.00 16.82 C </line>
<line>ATOM 779 CA LYS A 99 18.693 2.282 12.249 1.00 15.98 C </line>
<line>ATOM 788 CA GLY A 100 20.384 4.528 9.703 1.00 16.82 C </line>
<line>ATOM 792 CA ILE A 101 19.124 7.465 7.634 1.00 12.80 C </line>
<line>ATOM 800 CA ASP A 102 16.530 5.249 5.929 1.00 13.08 C </line>
</atom-coordinate>
<distance-map>
<line> ASP ILE GLY LYS ILE ASP LEU ILE LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 12.99 9.77 9.09 9.76 8.62 6.08 5.01 5.42 3.81 </line>
<line>LYS CA 13.15 10.69 8.93 8.05 6.17 5.10 5.43 3.80 </line>
<line>ILE CA 9.62 7.68 6.17 5.21 5.28 5.46 3.80 </line>
<line>LEU CA 8.62 5.67 4.10 5.50 5.62 3.81 </line>
<line>ASP CA 11.42 8.95 6.09 6.10 3.79 </line>
<line>ILE CA 10.80 9.53 6.06 3.77 </line>
<line>LYS CA 7.31 6.95 3.79 </line>
<line>GLY CA 5.44 3.81 </line>
<line>ILE CA 3.81 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>LYS CA 346</line>
<line>LYS CA 301</line>
<line>ILE CA 346</line>
<line>LEU CA 328</line>
<line>ASP CA 235</line>
<line>ILE CA 212</line>
<line>LYS CA 246</line>
<line>GLY CA 279</line>
<line>ILE CA 355</line>
<line>ASP CA 290</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1IOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1IOTA</entryIDChain>
<sequence>KKIVSDGNGMN</sequence>
<secondary-structure>HHHH GGG</secondary-structure>
<atom-coordinate>
<line>ATOM 731 CA LYS A 96 -7.198 19.838 25.607 1.00 21.88 C </line>
<line>ATOM 740 CA LYS A 97 -5.563 19.769 29.058 1.00 26.58 C </line>
<line>ATOM 749 CA ILE A 98 -2.802 22.185 28.013 1.00 21.11 C </line>
<line>ATOM 757 CA VAL A 99 -5.184 24.781 26.519 1.00 22.22 C </line>
<line>ATOM 764 CA SER A 100 -7.330 24.587 29.671 1.00 27.15 C </line>
<line>ATOM 770 CA ASP A 101 -4.290 25.337 31.850 1.00 38.20 C </line>
<line>ATOM 778 CA GLY A 102 -5.114 29.040 32.052 1.00 37.61 C </line>
<line>ATOM 782 CA ASN A 103 -2.780 30.520 29.424 1.00 31.41 C </line>
<line>ATOM 790 CA GLY A 104 -4.895 29.262 26.537 1.00 18.47 C </line>
<line>ATOM 794 CA MET A 105 -3.139 28.731 23.200 1.00 18.11 C </line>
<line>ATOM 802 CA ASN A 106 -0.263 31.047 24.287 1.00 19.65 C </line>
</atom-coordinate>
<distance-map>
<line> ASN MET GLY ASN GLY ASP SER VAL ILE LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 13.25 10.07 9.75 12.17 11.43 8.81 6.25 5.41 5.53 3.82 </line>
<line>LYS CA 13.34 10.98 9.84 11.11 9.75 6.36 5.17 5.63 3.81 </line>
<line>ILE CA 9.94 8.13 7.53 8.45 8.29 5.18 5.39 3.83 </line>
<line>VAL CA 8.27 5.55 4.49 6.87 6.98 5.43 3.82 </line>
<line>SER CA 10.98 8.75 6.13 7.48 5.51 3.81 </line>
<line>ASP CA 10.30 9.36 6.63 5.92 3.80 </line>
<line>GLY CA 9.37 9.07 5.52 3.81 </line>
<line>ASN CA 5.74 6.49 3.79 </line>
<line>GLY CA 5.45 3.81 </line>
<line>MET CA 3.85 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>LYS CA 360</line>
<line>LYS CA 317</line>
<line>ILE CA 379</line>
<line>VAL CA 351</line>
<line>SER CA 249</line>
<line>ASP CA 234</line>
<line>GLY CA 181</line>
<line>ASN CA 207</line>
<line>GLY CA 281</line>
<line>MET CA 370</line>
<line>ASN CA 293</line>
</n14>
</entryChain>
<parallel>
<x>25.97599983215332</x>
<y>-19.417999267578125</y>
<z>-14.043000221252441</z>
</parallel>
<rotation>
<x>-0.9980000257492065</x>
<y>-0.050999999046325684</y>
<z>0.019999999552965164</z>
<x>0.01899999938905239</x>
<y>-0.6620000004768372</y>
<z>-0.7490000128746033</z>
<x>0.050999999046325684</x>
<y>-0.746999979019165</y>
<z>0.6620000004768372</z>
</rotation>
<rmsd>1.372676968574524</rmsd>
<dmax>2.260385036468506</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1ALC</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1ALCA</entryIDChain>
<sequence>ALCTE-KLEQW</sequence>
<secondary-structure>HH - GGG</secondary-structure>
<atom-coordinate>
<line>ATOM 866 CA ALA A 109 12.788 9.430 -2.118 1.00 35.89 C </line>
<line>ATOM 871 CA LEU A 110 14.224 12.833 -2.991 1.00 15.03 C </line>
<line>ATOM 879 CA CYS A 111 17.552 13.386 -1.236 1.00 12.47 C </line>
<line>ATOM 885 CA THR A 112 20.183 11.574 -3.271 1.00149.31 C </line>
<line>ATOM 892 CA GLU A 113 20.093 13.870 -6.271 1.00 39.96 C </line>
<line>ATOM 901 CA LYS A 114 20.840 17.582 -6.556 1.00 49.99 C </line>
<line>ATOM 910 CA LEU A 115 21.686 18.151 -2.882 1.00 23.16 C </line>
<line>ATOM 918 CA GLU A 116 23.095 21.371 -4.279 1.00 30.21 C </line>
<line>ATOM 927 CA GLN A 117 19.974 23.380 -3.435 1.00 37.10 C </line>
<line>ATOM 936 CA TRP A 118 20.710 22.296 0.133 1.00 23.32 C </line>
</atom-coordinate>
<distance-map>
<line> TRP GLN GLU LEU LYS GLU THR CYS LEU ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 15.28 15.75 15.92 12.48 12.29 9.50 7.79 6.25 3.80 </line>
<line>LEU CA 11.89 12.02 12.38 9.16 8.89 6.80 6.10 3.80 </line>
<line>CYS CA 9.55 10.52 10.19 6.52 7.53 5.66 3.79 </line>
<line>THR CA 11.26 11.81 10.27 6.76 6.88 3.78 </line>
<line>GLU CA 10.60 9.92 8.32 5.69 3.80 </line>
<line>LYS CA 8.18 6.64 4.96 3.81 </line>
<line>LEU CA 5.22 5.53 3.78 </line>
<line>GLU CA 5.10 3.81 </line>
<line>GLN CA 3.80 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ALA CA 202</line>
<line>LEU CA 231</line>
<line>CYS CA 276</line>
<line>THR CA 244</line>
<line>GLU CA 182</line>
<line>LYS CA 179</line>
<line>LEU CA 249</line>
<line>GLU CA 193</line>
<line>GLN CA 219</line>
<line>TRP CA 312</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1IOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1IOTA</entryIDChain>
<sequence>NRCKGTDVQAW</sequence>
<secondary-structure>H GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 866 CA ASN A 113 4.082 34.358 17.218 1.00 22.99 C </line>
<line>ATOM 874 CA ARG A 114 2.594 33.267 13.913 1.00 19.60 C </line>
<line>ATOM 885 CA CYS A 115 -1.114 32.571 14.243 1.00 17.44 C </line>
<line>ATOM 891 CA LYS A 116 -2.457 34.845 16.941 1.00 17.60 C </line>
<line>ATOM 900 CA GLY A 117 -4.248 37.877 15.510 1.00 25.15 C </line>
<line>ATOM 904 CA THR A 118 -4.037 36.570 11.942 1.00 23.93 C </line>
<line>ATOM 911 CA ASP A 119 -6.840 35.460 9.631 1.00 33.04 C </line>
<line>ATOM 919 CA VAL A 120 -6.733 31.850 10.864 1.00 26.40 C </line>
<line>ATOM 926 CA GLN A 121 -9.875 31.168 8.857 1.00 30.29 C </line>
<line>ATOM 935 CA ALA A 122 -7.650 30.881 5.786 1.00 24.07 C </line>
<line>ATOM 940 CA TRP A 123 -6.330 27.578 7.150 1.00 24.85 C </line>
</atom-coordinate>
<distance-map>
<line> TRP ALA GLN VAL ASP THR GLY LYS CYS ARG ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 15.99 16.75 16.58 12.79 13.34 9.93 9.20 6.56 6.25 3.79 </line>
<line>ARG CA 12.56 13.29 13.62 9.91 10.59 7.67 8.40 6.10 3.79 </line>
<line>CYS CA 10.12 10.82 10.38 6.60 7.90 5.46 6.29 3.78 </line>
<line>LYS CA 12.79 12.93 11.57 8.01 8.55 5.52 3.80 </line>
<line>GLY CA 13.43 12.45 11.00 8.01 6.86 3.81 </line>
<line>THR CA 10.44 9.13 8.53 5.54 3.80 </line>
<line>ASP CA 8.28 6.03 5.31 3.82 </line>
<line>VAL CA 5.68 5.25 3.79 </line>
<line>GLN CA 5.33 3.80 </line>
<line>ALA CA 3.81 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ASN CA 204</line>
<line>ARG CA 245</line>
<line>CYS CA 298</line>
<line>LYS CA 270</line>
<line>GLY CA 193</line>
<line>THR CA 211</line>
<line>ASP CA 193</line>
<line>VAL CA 292</line>
<line>GLN CA 252</line>
<line>ALA CA 218</line>
<line>TRP CA 314</line>
</n14>
</entryChain>
<parallel>
<x>21.881999969482422</x>
<y>-19.149999618530273</y>
<z>-17.097999572753906</z>
</parallel>
<rotation>
<x>-0.9419999718666077</x>
<y>-0.3059999942779541</y>
<z>0.13500000536441803</z>
<x>-0.020999999716877937</x>
<y>-0.3490000069141388</y>
<z>-0.9369999766349792</z>
<x>0.33399999141693115</x>
<y>-0.8859999775886536</y>
<z>0.3230000138282776</z>
</rotation>
<rmsd>1.1702810525894165</rmsd>
<dmax>2.125159978866577</dmax>
</indel>