NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1ALCA-1LMAA
confEVID 1ALCA-1LMAA
pdbIDA 1ALC
pdbIDB 1LMA
pdbChainA A
pdbChainB A
identity 0.338600009679794
indelSize 3
alignment <alignment>
<seq1>KQFTKCELSQNL--YDIDGYGRIALPELICTMFHTSGYDTQAIVEND-ESTEYGLFQISNALWCKSSQSPQSRNICDITCDKFLDDDITDDIMCAKKILD-IKGIDYWIAHKALCTE-KLEQWLCEK--</seq1>
<seq2>KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL</seq2>
<ss_1> HHHHHHH --GGG GGG HHHHHHHHHH EEE - EEEEE EE GGGGG HHHHHHHHHHHH- GGG HHHHHH - GGG --</ss_1>
<ss_2> HHHHHHHHHH GGG HHHHHHHHH EEEEE EEEEE EE GGGG HHHHHHHHHHH GGGG HHHHH GGGGG </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1ALC</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1ALCA</entryIDChain>
<sequence>IVEND-ESTEY</sequence>
<secondary-structure>EE - EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 321 CA ILE A 41 3.033 16.578 15.239 1.00 20.64 C </line>
<line>ATOM 329 CA VAL A 42 1.788 13.721 13.058 1.00 18.44 C </line>
<line>ATOM 336 CA GLU A 43 -0.614 10.951 14.005 1.00 26.79 C </line>
<line>ATOM 345 CA ASN A 44 -0.039 7.866 11.845 1.00 71.02 C </line>
<line>ATOM 353 CA ASP A 45 -1.951 4.634 12.543 1.00 56.46 C </line>
<line>ATOM 361 CA GLU A 46 -2.475 4.928 16.283 1.00 35.34 C </line>
<line>ATOM 370 CA SER A 47 0.972 6.309 17.042 1.00 21.22 C </line>
<line>ATOM 376 CA THR A 48 2.463 9.719 16.434 1.00 17.23 C </line>
<line>ATOM 383 CA GLU A 49 5.707 11.291 15.290 1.00 4.32 C </line>
<line>ATOM 392 CA TYR A 50 7.086 14.432 16.903 1.00 7.69 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLU THR SER GLU ASP ASN GLU VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 4.88 5.92 6.99 10.63 12.93 13.22 9.84 6.82 3.80 </line>
<line>VAL CA 6.58 5.12 5.28 8.45 10.29 9.84 6.25 3.79 </line>
<line>GLU CA 8.93 6.46 4.11 5.77 6.70 6.62 3.81 </line>
<line>ASN CA 10.93 7.52 5.55 5.52 5.85 3.82 </line>
<line>ASP CA 14.02 10.51 7.78 5.62 3.79 </line>
<line>GLU CA 13.50 10.41 6.88 3.79 </line>
<line>SER CA 10.17 7.09 3.77 </line>
<line>THR CA 6.62 3.78 </line>
<line>GLU CA 3.79 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ILE CA 286</line>
<line>VAL CA 253</line>
<line>GLU CA 196</line>
<line>ASN CA 171</line>
<line>ASP CA 133</line>
<line>GLU CA 160</line>
<line>SER CA 233</line>
<line>THR CA 295</line>
<line>GLU CA 388</line>
<line>TYR CA 428</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1LMA</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1LMAA</entryIDChain>
<sequence>TNRNTDGSTDY</sequence>
<secondary-structure>EEEE EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 333 CA THR A 43 2.799 35.099 29.415 1.00 0.50 C </line>
<line>ATOM 340 CA ASN A 44 0.695 32.228 27.997 1.00 4.19 C </line>
<line>ATOM 348 CA ARG A 45 -0.145 29.034 29.846 1.00 46.88 C </line>
<line>ATOM 359 CA ASN A 46 -0.459 25.919 27.644 1.00 8.73 C </line>
<line>ATOM 367 CA THR A 47 -2.498 22.720 27.992 1.00 28.95 C </line>
<line>ATOM 374 CA ASP A 48 0.691 20.663 28.438 1.00 6.84 C </line>
<line>ATOM 382 CA GLY A 49 2.090 22.104 31.725 1.00 13.91 C </line>
<line>ATOM 386 CA SER A 50 4.272 24.482 29.652 1.00 3.70 C </line>
<line>ATOM 392 CA THR A 51 4.276 28.258 29.523 1.00 0.50 C </line>
<line>ATOM 399 CA ASP A 52 5.445 30.822 26.903 1.00 3.47 C </line>
<line>ATOM 407 CA TYR A 53 7.337 33.784 28.267 1.00 6.00 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASP THR SER GLY ASP THR ASN ARG ASN THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 4.86 5.62 7.00 10.72 13.22 14.62 13.54 9.90 6.76 3.83 </line>
<line>ASN CA 6.83 5.07 5.56 8.69 10.88 11.57 10.03 6.42 3.78 </line>
<line>ARG CA 9.00 6.57 4.50 6.35 7.52 8.53 6.99 3.83 </line>
<line>ASN CA 11.09 7.71 5.61 5.34 6.14 5.44 3.81 </line>
<line>THR CA 14.81 11.40 8.88 7.19 5.95 3.82 </line>
<line>ASP CA 14.71 11.32 8.47 5.37 3.85 </line>
<line>GLY CA 13.26 10.51 6.89 3.84 </line>
<line>SER CA 9.89 7.01 3.78 </line>
<line>THR CA 6.44 3.85 </line>
<line>ASP CA 3.77 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>THR CA 289</line>
<line>ASN CA 270</line>
<line>ARG CA 214</line>
<line>ASN CA 192</line>
<line>THR CA 134</line>
<line>ASP CA 161</line>
<line>GLY CA 191</line>
<line>SER CA 259</line>
<line>THR CA 311</line>
<line>ASP CA 407</line>
<line>TYR CA 424</line>
</n14>
</entryChain>
<parallel>
<x>-0.9819999933242798</x>
<y>-18.142000198364258</y>
<z>-14.668000221252441</z>
</parallel>
<rotation>
<x>0.6520000100135803</x>
<y>-0.10199999809265137</y>
<z>0.7509999871253967</z>
<x>0.23999999463558197</x>
<y>0.9679999947547913</y>
<z>-0.07599999755620956</z>
<x>-0.718999981880188</x>
<y>0.23000000417232513</y>
<z>0.656000018119812</z>
</rotation>
<rmsd>0.6819469928741455</rmsd>
<dmax>1.4274389743804932</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1ALC</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1ALCA</entryIDChain>
<sequence>KKILD-IKGID</sequence>
<secondary-structure>HHHHH- GG</secondary-structure>
<atom-coordinate>
<line>ATOM 729 CA LYS A 93 22.230 10.368 16.425 1.00 15.35 C </line>
<line>ATOM 738 CA LYS A 94 20.851 7.282 18.180 1.00 18.77 C </line>
<line>ATOM 747 CA ILE A 95 18.563 6.552 15.236 1.00 9.62 C </line>
<line>ATOM 755 CA LEU A 96 21.440 7.015 12.792 1.00 13.17 C </line>
<line>ATOM 763 CA ASP A 97 23.677 4.690 14.820 1.00 15.16 C </line>
<line>ATOM 771 CA ILE A 98 21.101 1.921 15.130 1.00 16.82 C </line>
<line>ATOM 779 CA LYS A 99 18.693 2.282 12.249 1.00 15.98 C </line>
<line>ATOM 788 CA GLY A 100 20.384 4.528 9.703 1.00 16.82 C </line>
<line>ATOM 792 CA ILE A 101 19.124 7.465 7.634 1.00 12.80 C </line>
<line>ATOM 800 CA ASP A 102 16.530 5.249 5.929 1.00 13.08 C </line>
</atom-coordinate>
<distance-map>
<line> ASP ILE GLY LYS ILE ASP LEU ILE LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 12.99 9.77 9.09 9.76 8.62 6.08 5.01 5.42 3.81 </line>
<line>LYS CA 13.15 10.69 8.93 8.05 6.17 5.10 5.43 3.80 </line>
<line>ILE CA 9.62 7.68 6.17 5.21 5.28 5.46 3.80 </line>
<line>LEU CA 8.62 5.67 4.10 5.50 5.62 3.81 </line>
<line>ASP CA 11.42 8.95 6.09 6.10 3.79 </line>
<line>ILE CA 10.80 9.53 6.06 3.77 </line>
<line>LYS CA 7.31 6.95 3.79 </line>
<line>GLY CA 5.44 3.81 </line>
<line>ILE CA 3.81 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>LYS CA 346</line>
<line>LYS CA 301</line>
<line>ILE CA 346</line>
<line>LEU CA 328</line>
<line>ASP CA 235</line>
<line>ILE CA 212</line>
<line>LYS CA 246</line>
<line>GLY CA 279</line>
<line>ILE CA 355</line>
<line>ASP CA 290</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1LMA</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1LMAA</entryIDChain>
<sequence>KKIVSDGNGMN</sequence>
<secondary-structure>HHHH GGG</secondary-structure>
<atom-coordinate>
<line>ATOM 731 CA LYS A 96 19.547 32.774 18.782 1.00 2.24 C </line>
<line>ATOM 740 CA LYS A 97 19.851 29.282 20.285 1.00 0.50 C </line>
<line>ATOM 749 CA ILE A 98 16.290 28.325 19.247 1.00 0.50 C </line>
<line>ATOM 757 CA VAL A 99 16.894 29.474 15.664 1.00 11.03 C </line>
<line>ATOM 764 CA SER A 100 20.112 27.425 15.455 1.00 32.33 C </line>
<line>ATOM 770 CA ASP A 101 18.181 24.208 16.269 1.00 30.36 C </line>
<line>ATOM 778 CA GLY A 102 17.274 23.296 12.700 1.00 53.16 C </line>
<line>ATOM 782 CA ASN A 103 13.764 24.736 12.608 1.00 47.36 C </line>
<line>ATOM 790 CA GLY A 104 14.817 28.346 12.051 1.00 0.50 C </line>
<line>ATOM 794 CA MET A 105 12.020 30.813 12.910 1.00 8.69 C </line>
<line>ATOM 802 CA ASN A 106 9.483 27.980 12.343 1.00 17.50 C </line>
</atom-coordinate>
<distance-map>
<line> ASN MET GLY ASN GLY ASP SER VAL ILE LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 12.87 9.75 9.34 11.67 11.49 9.03 6.32 5.26 5.53 3.81 </line>
<line>LYS CA 13.13 10.87 9.70 10.80 10.00 6.68 5.18 5.49 3.83 </line>
<line>ILE CA 9.70 8.04 7.35 7.96 8.31 5.42 5.46 3.81 </line>
<line>VAL CA 8.26 5.76 4.32 6.45 6.86 5.45 3.82 </line>
<line>SER CA 11.09 9.13 6.36 7.46 5.72 3.84 </line>
<line>ASP CA 10.26 9.64 6.80 5.76 3.79 </line>
<line>GLY CA 9.10 9.17 5.65 3.80 </line>
<line>ASN CA 5.38 6.33 3.80 </line>
<line>GLY CA 5.35 3.83 </line>
<line>MET CA 3.84 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>LYS CA 363</line>
<line>LYS CA 319</line>
<line>ILE CA 376</line>
<line>VAL CA 340</line>
<line>SER CA 241</line>
<line>ASP CA 225</line>
<line>GLY CA 183</line>
<line>ASN CA 231</line>
<line>GLY CA 301</line>
<line>MET CA 383</line>
<line>ASN CA 299</line>
</n14>
</entryChain>
<parallel>
<x>3.5490000247955322</x>
<y>-22.378000259399414</y>
<z>-1.531999945640564</z>
</parallel>
<rotation>
<x>0.8500000238418579</x>
<y>-0.014999999664723873</y>
<z>0.5260000228881836</z>
<x>0.2370000034570694</x>
<y>0.902999997138977</y>
<z>-0.3580000102519989</z>
<x>-0.4699999988079071</x>
<y>0.42899999022483826</y>
<z>0.7710000276565552</z>
</rotation>
<rmsd>1.3650139570236206</rmsd>
<dmax>2.484626054763794</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1ALC</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1ALCA</entryIDChain>
<sequence>ALCTE-KLEQW</sequence>
<secondary-structure>HH - GGG</secondary-structure>
<atom-coordinate>
<line>ATOM 866 CA ALA A 109 12.788 9.430 -2.118 1.00 35.89 C </line>
<line>ATOM 871 CA LEU A 110 14.224 12.833 -2.991 1.00 15.03 C </line>
<line>ATOM 879 CA CYS A 111 17.552 13.386 -1.236 1.00 12.47 C </line>
<line>ATOM 885 CA THR A 112 20.183 11.574 -3.271 1.00149.31 C </line>
<line>ATOM 892 CA GLU A 113 20.093 13.870 -6.271 1.00 39.96 C </line>
<line>ATOM 901 CA LYS A 114 20.840 17.582 -6.556 1.00 49.99 C </line>
<line>ATOM 910 CA LEU A 115 21.686 18.151 -2.882 1.00 23.16 C </line>
<line>ATOM 918 CA GLU A 116 23.095 21.371 -4.279 1.00 30.21 C </line>
<line>ATOM 927 CA GLN A 117 19.974 23.380 -3.435 1.00 37.10 C </line>
<line>ATOM 936 CA TRP A 118 20.710 22.296 0.133 1.00 23.32 C </line>
</atom-coordinate>
<distance-map>
<line> TRP GLN GLU LEU LYS GLU THR CYS LEU ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 15.28 15.75 15.92 12.48 12.29 9.50 7.79 6.25 3.80 </line>
<line>LEU CA 11.89 12.02 12.38 9.16 8.89 6.80 6.10 3.80 </line>
<line>CYS CA 9.55 10.52 10.19 6.52 7.53 5.66 3.79 </line>
<line>THR CA 11.26 11.81 10.27 6.76 6.88 3.78 </line>
<line>GLU CA 10.60 9.92 8.32 5.69 3.80 </line>
<line>LYS CA 8.18 6.64 4.96 3.81 </line>
<line>LEU CA 5.22 5.53 3.78 </line>
<line>GLU CA 5.10 3.81 </line>
<line>GLN CA 3.80 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ALA CA 202</line>
<line>LEU CA 231</line>
<line>CYS CA 276</line>
<line>THR CA 244</line>
<line>GLU CA 182</line>
<line>LYS CA 179</line>
<line>LEU CA 249</line>
<line>GLU CA 193</line>
<line>GLN CA 219</line>
<line>TRP CA 312</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1LMA</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1LMAA</entryIDChain>
<sequence>NRCKGTDVQAW</sequence>
<secondary-structure>H GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 866 CA ASN A 113 1.372 31.772 10.438 1.00 11.14 C </line>
<line>ATOM 874 CA ARG A 114 1.623 35.580 10.007 1.00 7.70 C </line>
<line>ATOM 885 CA CYS A 115 5.082 36.702 8.894 1.00 3.28 C </line>
<line>ATOM 891 CA LYS A 116 6.492 33.969 6.714 1.00 14.18 C </line>
<line>ATOM 900 CA GLY A 117 6.472 35.026 3.077 1.00 5.15 C </line>
<line>ATOM 904 CA THR A 118 5.150 38.569 3.621 1.00 9.18 C </line>
<line>ATOM 911 CA ASP A 119 6.692 41.974 3.034 1.00 7.13 C </line>
<line>ATOM 919 CA VAL A 120 8.748 41.737 6.316 1.00 0.50 C </line>
<line>ATOM 926 CA GLN A 121 10.745 44.823 5.242 1.00 7.06 C </line>
<line>ATOM 935 CA ALA A 122 7.644 46.896 6.089 1.00 0.50 C </line>
<line>ATOM 940 CA TRP A 123 8.275 46.134 9.781 1.00 0.50 C </line>
</atom-coordinate>
<distance-map>
<line> TRP ALA GLN VAL ASP THR GLY LYS CYS ARG ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 15.95 16.94 16.89 13.07 13.68 10.34 9.53 6.70 6.36 3.84 </line>
<line>ARG CA 12.48 13.40 13.83 10.11 10.73 7.88 8.48 6.09 3.80 </line>
<line>CYS CA 10.00 10.88 10.55 6.74 8.05 5.59 6.21 3.77 </line>
<line>LYS CA 12.67 12.99 11.75 8.10 8.81 5.70 3.79 </line>
<line>GLY CA 13.10 12.30 10.91 7.79 6.95 3.82 </line>
<line>THR CA 10.24 9.04 8.55 5.50 3.78 </line>
<line>ASP CA 8.08 5.87 5.42 3.88 </line>
<line>VAL CA 5.62 5.28 3.83 </line>
<line>GLN CA 5.33 3.83 </line>
<line>ALA CA 3.82 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ASN CA 204</line>
<line>ARG CA 246</line>
<line>CYS CA 303</line>
<line>LYS CA 267</line>
<line>GLY CA 197</line>
<line>THR CA 213</line>
<line>ASP CA 198</line>
<line>VAL CA 293</line>
<line>GLN CA 254</line>
<line>ALA CA 219</line>
<line>TRP CA 316</line>
</n14>
</entryChain>
<parallel>
<x>12.904000282287598</x>
<y>-22.92300033569336</y>
<z>-10.416000366210938</z>
</parallel>
<rotation>
<x>0.9229999780654907</x>
<y>0.014999999664723873</y>
<z>0.38499999046325684</z>
<x>0.0010000000474974513</x>
<y>0.9990000128746033</y>
<z>-0.041999999433755875</z>
<x>-0.38600000739097595</x>
<y>0.039000000804662704</y>
<z>0.921999990940094</z>
</rotation>
<rmsd>1.203029990196228</rmsd>
<dmax>2.0539228916168213</dmax>
</indel>