NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1ALCA-1VEDA
confEVID 1ALCA-1VEDA
pdbIDA 1ALC
pdbIDB 1VED
pdbChainA A
pdbChainB A
identity 0.338600009679794
indelSize 3
alignment <alignment>
<seq1>KQFTKCELSQNL--YDIDGYGRIALPELICTMFHTSGYDTQAIVEND-ESTEYGLFQISNALWCKSSQSPQSRNICDITCDKFLDDDITDDIMCAKKILD-IKGIDYWIAHKALCTE-KLEQWLCEK--</seq1>
<seq2>KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL</seq2>
<ss_1> HHHHHHH --GGG GGG HHHHHHHHHH EEE - EEEEE EE GGGGG HHHHHHHHHHHH- GGG HHHHHH - GGG --</ss_1>
<ss_2> HHHHHHHHHH GGG HHHHHHHHHH EEE EE GGGG HHHHHHHHHHH GGGG HHHHH GGG </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1ALC</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1ALCA</entryIDChain>
<sequence>IVEND-ESTEY</sequence>
<secondary-structure>EE - EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 321 CA ILE A 41 3.033 16.578 15.239 1.00 20.64 C </line>
<line>ATOM 329 CA VAL A 42 1.788 13.721 13.058 1.00 18.44 C </line>
<line>ATOM 336 CA GLU A 43 -0.614 10.951 14.005 1.00 26.79 C </line>
<line>ATOM 345 CA ASN A 44 -0.039 7.866 11.845 1.00 71.02 C </line>
<line>ATOM 353 CA ASP A 45 -1.951 4.634 12.543 1.00 56.46 C </line>
<line>ATOM 361 CA GLU A 46 -2.475 4.928 16.283 1.00 35.34 C </line>
<line>ATOM 370 CA SER A 47 0.972 6.309 17.042 1.00 21.22 C </line>
<line>ATOM 376 CA THR A 48 2.463 9.719 16.434 1.00 17.23 C </line>
<line>ATOM 383 CA GLU A 49 5.707 11.291 15.290 1.00 4.32 C </line>
<line>ATOM 392 CA TYR A 50 7.086 14.432 16.903 1.00 7.69 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLU THR SER GLU ASP ASN GLU VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 4.88 5.92 6.99 10.63 12.93 13.22 9.84 6.82 3.80 </line>
<line>VAL CA 6.58 5.12 5.28 8.45 10.29 9.84 6.25 3.79 </line>
<line>GLU CA 8.93 6.46 4.11 5.77 6.70 6.62 3.81 </line>
<line>ASN CA 10.93 7.52 5.55 5.52 5.85 3.82 </line>
<line>ASP CA 14.02 10.51 7.78 5.62 3.79 </line>
<line>GLU CA 13.50 10.41 6.88 3.79 </line>
<line>SER CA 10.17 7.09 3.77 </line>
<line>THR CA 6.62 3.78 </line>
<line>GLU CA 3.79 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ILE CA 286</line>
<line>VAL CA 253</line>
<line>GLU CA 196</line>
<line>ASN CA 171</line>
<line>ASP CA 133</line>
<line>GLU CA 160</line>
<line>SER CA 233</line>
<line>THR CA 295</line>
<line>GLU CA 388</line>
<line>TYR CA 428</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1VED</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1VEDA</entryIDChain>
<sequence>TNRNTDGSTDY</sequence>
<secondary-structure> EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 333 CA THR A 43 5.043 27.447 11.223 1.00 21.42 C </line>
<line>ATOM 340 CA ASN A 44 8.822 27.489 10.859 1.00 24.22 C </line>
<line>ATOM 348 CA ARG A 45 11.163 30.366 11.629 1.00 24.26 C </line>
<line>ATOM 359 CA ASN A 46 14.201 30.980 9.412 1.00 23.52 C </line>
<line>ATOM 367 CA THR A 47 17.619 32.593 9.872 1.00 25.15 C </line>
<line>ATOM 374 CA ASP A 48 16.745 35.640 7.761 1.00 24.69 C </line>
<line>ATOM 382 CA GLY A 49 13.986 36.494 10.223 1.00 23.99 C </line>
<line>ATOM 386 CA SER A 50 11.228 35.209 7.949 1.00 19.71 C </line>
<line>ATOM 392 CA THR A 51 8.676 32.569 8.871 1.00 16.28 C </line>
<line>ATOM 399 CA ASP A 52 6.960 29.912 6.754 1.00 16.20 C </line>
<line>ATOM 407 CA TYR A 53 3.211 29.697 7.311 1.00 16.71 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASP THR SER GLY ASP THR ASN ARG ASN THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 4.87 5.45 6.71 10.45 12.76 14.70 13.66 9.98 6.79 3.80 </line>
<line>ASN CA 7.00 5.12 5.46 8.59 10.40 11.78 10.22 6.57 3.79 </line>
<line>ARG CA 9.07 6.45 4.32 6.08 6.89 8.60 7.05 3.81 </line>
<line>ASN CA 11.26 7.79 5.77 5.37 5.58 5.56 3.81 </line>
<line>THR CA 14.92 11.42 9.00 7.17 5.34 3.81 </line>
<line>ASP CA 14.79 11.38 8.70 5.54 3.80 </line>
<line>GLY CA 13.07 10.23 6.74 3.80 </line>
<line>SER CA 9.75 6.91 3.79 </line>
<line>THR CA 6.37 3.81 </line>
<line>ASP CA 3.80 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>THR CA 292</line>
<line>ASN CA 271</line>
<line>ARG CA 218</line>
<line>ASN CA 204</line>
<line>THR CA 144</line>
<line>ASP CA 166</line>
<line>GLY CA 196</line>
<line>SER CA 260</line>
<line>THR CA 317</line>
<line>ASP CA 413</line>
<line>TYR CA 425</line>
</n14>
</entryChain>
<parallel>
<x>-10.944999694824219</x>
<y>-22.30500030517578</y>
<z>4.551000118255615</z>
</parallel>
<rotation>
<x>-0.42800000309944153</x>
<y>-0.6589999794960022</y>
<z>-0.6190000176429749</z>
<x>-0.25699999928474426</x>
<y>-0.5680000185966492</y>
<z>0.7820000052452087</z>
<x>-0.8669999837875366</x>
<y>0.49399998784065247</y>
<z>0.07400000095367432</z>
</rotation>
<rmsd>0.5713890194892883</rmsd>
<dmax>1.2294889688491821</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1ALC</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1ALCA</entryIDChain>
<sequence>KKILD-IKGID</sequence>
<secondary-structure>HHHHH- GG</secondary-structure>
<atom-coordinate>
<line>ATOM 729 CA LYS A 93 22.230 10.368 16.425 1.00 15.35 C </line>
<line>ATOM 738 CA LYS A 94 20.851 7.282 18.180 1.00 18.77 C </line>
<line>ATOM 747 CA ILE A 95 18.563 6.552 15.236 1.00 9.62 C </line>
<line>ATOM 755 CA LEU A 96 21.440 7.015 12.792 1.00 13.17 C </line>
<line>ATOM 763 CA ASP A 97 23.677 4.690 14.820 1.00 15.16 C </line>
<line>ATOM 771 CA ILE A 98 21.101 1.921 15.130 1.00 16.82 C </line>
<line>ATOM 779 CA LYS A 99 18.693 2.282 12.249 1.00 15.98 C </line>
<line>ATOM 788 CA GLY A 100 20.384 4.528 9.703 1.00 16.82 C </line>
<line>ATOM 792 CA ILE A 101 19.124 7.465 7.634 1.00 12.80 C </line>
<line>ATOM 800 CA ASP A 102 16.530 5.249 5.929 1.00 13.08 C </line>
</atom-coordinate>
<distance-map>
<line> ASP ILE GLY LYS ILE ASP LEU ILE LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 12.99 9.77 9.09 9.76 8.62 6.08 5.01 5.42 3.81 </line>
<line>LYS CA 13.15 10.69 8.93 8.05 6.17 5.10 5.43 3.80 </line>
<line>ILE CA 9.62 7.68 6.17 5.21 5.28 5.46 3.80 </line>
<line>LEU CA 8.62 5.67 4.10 5.50 5.62 3.81 </line>
<line>ASP CA 11.42 8.95 6.09 6.10 3.79 </line>
<line>ILE CA 10.80 9.53 6.06 3.77 </line>
<line>LYS CA 7.31 6.95 3.79 </line>
<line>GLY CA 5.44 3.81 </line>
<line>ILE CA 3.81 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>LYS CA 346</line>
<line>LYS CA 301</line>
<line>ILE CA 346</line>
<line>LEU CA 328</line>
<line>ASP CA 235</line>
<line>ILE CA 212</line>
<line>LYS CA 246</line>
<line>GLY CA 279</line>
<line>ILE CA 355</line>
<line>ASP CA 290</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1VED</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1VEDA</entryIDChain>
<sequence>KKIVSDGNGMN</sequence>
<secondary-structure>HHHH GGG</secondary-structure>
<atom-coordinate>
<line>ATOM 731 CA LYS A 96 -1.084 29.781 -7.560 1.00 17.41 C </line>
<line>ATOM 740 CA LYS A 97 0.640 33.174 -7.686 1.00 19.12 C </line>
<line>ATOM 749 CA ILE A 98 3.914 31.677 -6.435 1.00 20.86 C </line>
<line>ATOM 757 CA VAL A 99 3.989 28.855 -8.998 1.00 29.40 C </line>
<line>ATOM 764 CA SER A 100 3.259 31.406 -11.730 1.00 37.81 C </line>
<line>ATOM 770 CA ASP A 101 6.363 33.290 -10.561 1.00 47.01 C </line>
<line>ATOM 778 CA GLY A 102 8.563 31.593 -13.133 1.00 46.74 C </line>
<line>ATOM 782 CA ASN A 103 10.210 28.761 -11.225 1.00 41.14 C </line>
<line>ATOM 790 CA GLY A 104 7.353 26.283 -10.954 1.00 29.58 C </line>
<line>ATOM 794 CA MET A 105 7.140 24.336 -7.713 1.00 22.60 C </line>
<line>ATOM 802 CA ASN A 106 10.843 24.702 -6.971 1.00 25.27 C </line>
</atom-coordinate>
<distance-map>
<line> ASN MET GLY ASN GLY ASP SER VAL ILE LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 12.98 9.86 9.74 11.92 11.29 8.76 6.24 5.35 5.46 3.81 </line>
<line>LYS CA 13.28 10.97 10.16 11.12 9.74 6.41 5.13 5.62 3.81 </line>
<line>ILE CA 9.85 8.12 7.83 8.43 8.15 5.06 5.34 3.81 </line>
<line>VAL CA 8.27 5.66 4.66 6.61 6.75 5.27 3.81 </line>
<line>SER CA 11.19 9.01 6.60 7.45 5.49 3.81 </line>
<line>ASP CA 10.33 9.43 7.09 5.98 3.79 </line>
<line>GLY CA 9.52 9.17 5.87 3.79 </line>
<line>ASN CA 5.91 6.43 3.79 </line>
<line>GLY CA 5.53 3.79 </line>
<line>MET CA 3.79 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>LYS CA 363</line>
<line>LYS CA 310</line>
<line>ILE CA 375</line>
<line>VAL CA 342</line>
<line>SER CA 240</line>
<line>ASP CA 232</line>
<line>GLY CA 181</line>
<line>ASN CA 211</line>
<line>GLY CA 284</line>
<line>MET CA 373</line>
<line>ASN CA 299</line>
</n14>
</entryChain>
<parallel>
<x>16.261999130249023</x>
<y>-24.611000061035156</y>
<z>24.031999588012695</z>
</parallel>
<rotation>
<x>-0.6010000109672546</x>
<y>-0.7250000238418579</y>
<z>-0.335999995470047</z>
<x>-0.09700000286102295</x>
<y>-0.35100001096725464</y>
<z>0.9309999942779541</z>
<x>-0.7929999828338623</x>
<y>0.5929999947547913</y>
<z>0.14000000059604645</z>
</rotation>
<rmsd>1.3764410018920898</rmsd>
<dmax>2.1727800369262695</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1ALC</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1ALCA</entryIDChain>
<sequence>ALCTE-KLEQW</sequence>
<secondary-structure>HH - GGG</secondary-structure>
<atom-coordinate>
<line>ATOM 866 CA ALA A 109 12.788 9.430 -2.118 1.00 35.89 C </line>
<line>ATOM 871 CA LEU A 110 14.224 12.833 -2.991 1.00 15.03 C </line>
<line>ATOM 879 CA CYS A 111 17.552 13.386 -1.236 1.00 12.47 C </line>
<line>ATOM 885 CA THR A 112 20.183 11.574 -3.271 1.00149.31 C </line>
<line>ATOM 892 CA GLU A 113 20.093 13.870 -6.271 1.00 39.96 C </line>
<line>ATOM 901 CA LYS A 114 20.840 17.582 -6.556 1.00 49.99 C </line>
<line>ATOM 910 CA LEU A 115 21.686 18.151 -2.882 1.00 23.16 C </line>
<line>ATOM 918 CA GLU A 116 23.095 21.371 -4.279 1.00 30.21 C </line>
<line>ATOM 927 CA GLN A 117 19.974 23.380 -3.435 1.00 37.10 C </line>
<line>ATOM 936 CA TRP A 118 20.710 22.296 0.133 1.00 23.32 C </line>
</atom-coordinate>
<distance-map>
<line> TRP GLN GLU LEU LYS GLU THR CYS LEU ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 15.28 15.75 15.92 12.48 12.29 9.50 7.79 6.25 3.80 </line>
<line>LEU CA 11.89 12.02 12.38 9.16 8.89 6.80 6.10 3.80 </line>
<line>CYS CA 9.55 10.52 10.19 6.52 7.53 5.66 3.79 </line>
<line>THR CA 11.26 11.81 10.27 6.76 6.88 3.78 </line>
<line>GLU CA 10.60 9.92 8.32 5.69 3.80 </line>
<line>LYS CA 8.18 6.64 4.96 3.81 </line>
<line>LEU CA 5.22 5.53 3.78 </line>
<line>GLU CA 5.10 3.81 </line>
<line>GLN CA 3.80 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ALA CA 202</line>
<line>LEU CA 231</line>
<line>CYS CA 276</line>
<line>THR CA 244</line>
<line>GLU CA 182</line>
<line>LYS CA 179</line>
<line>LEU CA 249</line>
<line>GLU CA 193</line>
<line>GLN CA 219</line>
<line>TRP CA 312</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1VED</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1VEDA</entryIDChain>
<sequence>NRCKGTDVQAW</sequence>
<secondary-structure>H GGG </secondary-structure>
<atom-coordinate>
<line>ATOM 866 CA ASN A 113 13.911 17.276 -2.556 1.00 25.85 C </line>
<line>ATOM 874 CA ARG A 114 11.227 14.653 -1.974 1.00 26.11 C </line>
<line>ATOM 885 CA CYS A 115 8.512 14.842 -4.648 1.00 22.43 C </line>
<line>ATOM 891 CA LYS A 116 10.085 15.922 -7.923 1.00 29.30 C </line>
<line>ATOM 900 CA GLY A 117 10.849 12.891 -10.058 1.00 34.49 C </line>
<line>ATOM 904 CA THR A 118 8.888 10.417 -7.931 1.00 32.36 C </line>
<line>ATOM 911 CA ASP A 119 5.597 8.633 -8.553 1.00 29.54 C </line>
<line>ATOM 919 CA VAL A 120 3.393 11.427 -7.243 1.00 27.84 C </line>
<line>ATOM 926 CA GLN A 121 0.296 9.538 -8.410 1.00 25.73 C </line>
<line>ATOM 935 CA ALA A 122 0.880 7.464 -5.280 1.00 21.01 C </line>
<line>ATOM 940 CA TRP A 123 -0.388 10.401 -3.260 1.00 21.04 C </line>
</atom-coordinate>
<distance-map>
<line> TRP ALA GLN VAL ASP THR GLY LYS CYS ARG ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 15.88 16.54 16.72 12.92 13.41 10.06 9.21 6.73 6.28 3.80 </line>
<line>ARG CA 12.44 13.03 13.68 9.98 10.55 7.67 8.28 6.19 3.82 </line>
<line>CYS CA 10.04 10.63 10.48 6.68 7.89 5.52 6.21 3.79 </line>
<line>LYS CA 12.72 12.78 11.70 8.09 8.58 5.63 3.79 </line>
<line>GLY CA 13.37 12.32 11.19 8.10 6.93 3.81 </line>
<line>THR CA 10.39 8.94 8.65 5.63 3.79 </line>
<line>ASP CA 8.18 5.86 5.38 3.79 </line>
<line>VAL CA 5.59 5.09 3.81 </line>
<line>GLN CA 5.27 3.80 </line>
<line>ALA CA 3.78 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ASN CA 207</line>
<line>ARG CA 243</line>
<line>CYS CA 302</line>
<line>LYS CA 269</line>
<line>GLY CA 196</line>
<line>THR CA 209</line>
<line>ASP CA 198</line>
<line>VAL CA 300</line>
<line>GLN CA 253</line>
<line>ALA CA 225</line>
<line>TRP CA 318</line>
</n14>
</entryChain>
<parallel>
<x>10.824000358581543</x>
<y>1.6269999742507935</y>
<z>2.7200000286102295</z>
</parallel>
<rotation>
<x>-0.49799999594688416</x>
<y>-0.7120000123977661</y>
<z>-0.4950000047683716</z>
<x>0.16200000047683716</x>
<y>-0.6370000243186951</y>
<z>0.753000020980835</z>
<x>-0.8519999980926514</x>
<y>0.29499998688697815</y>
<z>0.43299999833106995</z>
</rotation>
<rmsd>1.1682000160217285</rmsd>
<dmax>2.162348985671997</dmax>
</indel>