NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1AP4A-1CLMA
confEVID 1AP4A-1CLMA
pdbIDA 1AP4
pdbIDB 1CLM
pdbChainA A
pdbChainB A
identity 0.238100007176399
indelSize 1
alignment <alignment>
<seq1>---------------------------------------MDDIYKAAVEQL-------------TEEQKNE-------FKAAFDIFVLGAE--DGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDS</seq1>
<seq2>LTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRMMVS------</seq2>
<ss_1>--------------------------------------- HHHHHHHHH ------------- HHHHHH-------HHHHHHHHH -- HHHHHHHHHH HHHHHHHHHHH HHHHHHHHHHHH </ss_1>
<ss_2> HHHHHHHHHHHHHH EEE HHHHHHHHHH HHHHHHHHH EEEHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHH HHHHHHHHH HHHHHHH ------</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1AP4</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1AP4A</entryIDChain>
<sequence>VLGAE--DGCIS</sequence>
<secondary-structure>H -- </secondary-structure>
<atom-coordinate>
<line>ATOM 439 CA VAL A 28 61.888 10.184 -4.244 1.00 0.78 C </line>
<line>ATOM 455 CA LEU A 29 60.409 11.625 -7.461 1.00 1.39 C </line>
<line>ATOM 474 CA GLY A 30 57.192 11.840 -5.406 1.00 2.16 C </line>
<line>ATOM 481 CA ALA A 31 58.685 12.419 -1.936 1.00 1.87 C </line>
<line>ATOM 491 CA GLU A 32 58.700 16.029 -0.677 1.00 2.52 C </line>
<line>ATOM 506 CA ASP A 33 62.389 16.222 0.317 1.00 1.82 C </line>
<line>ATOM 518 CA GLY A 34 63.931 13.670 -2.072 1.00 1.06 C </line>
<line>ATOM 525 CA CYS A 35 64.027 10.357 -0.176 1.00 0.79 C </line>
<line>ATOM 536 CA ILE A 36 62.504 6.899 -0.769 1.00 0.69 C </line>
<line>ATOM 555 CA SER A 37 59.543 6.380 1.599 1.00 0.91 C </line>
</atom-coordinate>
<distance-map>
<line> SER ILE CYS GLY ASP GLU ALA GLY LEU VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 7.36 4.82 4.60 4.59 7.58 7.55 4.54 5.11 3.82 </line>
<line>LEU CA 10.50 8.46 8.23 6.75 9.25 8.27 5.84 3.82 </line>
<line>GLY CA 9.19 8.61 8.73 7.74 8.89 6.50 3.82 </line>
<line>ALA CA 7.05 6.81 5.99 5.39 5.77 3.82 </line>
<line>GLU CA 9.95 9.89 7.80 5.91 3.83 </line>
<line>ASP CA 10.33 9.39 6.11 3.82 </line>
<line>GLY CA 9.27 7.04 3.82 </line>
<line>CYS CA 6.25 3.82 </line>
<line>ILE CA 3.83 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>VAL CA 505</line>
<line>LEU CA 381</line>
<line>GLY CA 339</line>
<line>ALA CA 377</line>
<line>GLU CA 251</line>
<line>ASP CA 276</line>
<line>GLY CA 407</line>
<line>CYS CA 569</line>
<line>ILE CA 712</line>
<line>SER CA 636</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1CLM</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CLMA</entryIDChain>
<sequence>KVFDRDGNGLIS</sequence>
<secondary-structure>HHH </secondary-structure>
<atom-coordinate>
<line>ATOM 675 CA LYS A 90 8.808 19.620 19.920 1.00 23.71 C </line>
<line>ATOM 684 CA VAL A 91 7.945 15.942 19.679 1.00 25.45 C </line>
<line>ATOM 691 CA PHE A 92 9.754 15.794 16.277 1.00 21.77 C </line>
<line>ATOM 702 CA ASP A 93 12.857 17.681 17.468 1.00 22.02 C </line>
<line>ATOM 710 CA ARG A 94 14.045 14.831 19.628 1.00 29.24 C </line>
<line>ATOM 721 CA ASP A 95 17.255 16.588 20.665 1.00 29.52 C </line>
<line>ATOM 729 CA GLY A 96 15.717 20.042 21.392 1.00 30.43 C </line>
<line>ATOM 733 CA ASN A 97 18.129 21.879 18.997 1.00 29.00 C </line>
<line>ATOM 741 CA GLY A 98 15.374 23.829 17.044 1.00 27.28 C </line>
<line>ATOM 745 CA LEU A 99 15.861 21.721 13.854 1.00 22.39 C </line>
<line>ATOM 753 CA ILE A 100 14.051 18.556 12.689 1.00 16.35 C </line>
<line>ATOM 761 CA SER A 101 16.665 16.364 10.828 1.00 15.62 C </line>
</atom-coordinate>
<distance-map>
<line> SER ILE LEU GLY ASN GLY ASP ARG ASP PHE VAL LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 12.45 8.99 9.54 8.31 9.64 7.08 9.01 7.10 5.12 5.37 3.79 </line>
<line>VAL CA 12.43 9.64 11.40 11.15 11.81 8.95 9.38 6.20 5.66 3.86 </line>
<line>PHE CA 8.82 6.24 8.85 9.84 10.70 8.93 8.73 5.53 3.82 </line>
<line>ASP CA 7.77 5.00 6.20 6.66 6.91 5.40 5.55 3.77 </line>
<line>ARG CA 9.31 7.88 9.17 9.46 8.17 5.75 3.80 </line>
<line>ASP CA 9.86 8.82 8.64 8.31 5.62 3.85 </line>
<line>GLY CA 11.23 8.98 7.72 5.78 3.86 </line>
<line>ASN CA 9.96 8.21 5.62 3.90 </line>
<line>GLY CA 9.80 6.97 3.85 </line>
<line>LEU CA 6.20 3.83 </line>
<line>ILE CA 3.89 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>LYS CA 260</line>
<line>VAL CA 260</line>
<line>PHE CA 324</line>
<line>ASP CA 275</line>
<line>ARG CA 228</line>
<line>ASP CA 175</line>
<line>GLY CA 191</line>
<line>ASN CA 182</line>
<line>GLY CA 238</line>
<line>LEU CA 293</line>
<line>ILE CA 361</line>
<line>SER CA 330</line>
</n14>
</entryChain>
<parallel>
<x>48.055999755859375</x>
<y>-6.11899995803833</y>
<z>-20.565000534057617</z>
</parallel>
<rotation>
<x>0.05400000140070915</x>
<y>0.5559999942779541</y>
<z>0.8299999833106995</z>
<x>0.9909999966621399</x>
<y>-0.1340000033378601</y>
<z>0.02500000037252903</z>
<x>0.125</x>
<y>0.8209999799728394</y>
<z>-0.5580000281333923</z>
</rotation>
<rmsd>2.489190101623535</rmsd>
<dmax>3.5478460788726807</dmax>
</indel>