NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1ANTI-2B4XL
confEVID 1ANTI-2B4XL
pdbIDA 1ANT
pdbIDB 2B4X
pdbChainA I
pdbChainB L
identity 0.930899977684021
indelSize 3
alignment <alignment>
<seq1>---------RDIPMNPMCIYRSPEKKATNRRVWELSKANSRFATTFYQHLADSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQIHFFFAKLNCRLYRKANKSSKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAINKWVSNKTEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESCSASMMYQEGKFRYRRVAEGTQVLELPFKGDDITMVLILPKPEKSLAKVEKELTPEVLQEWLDELEEMMLVVHMPRFRIEDGFSLKEQLQDMGLVDLFSPEKSKLPGIVAEGRDDLYVSDAFHKAFLEVNEAASTA----VVIAGRSLNPNRVTFKANRPFLVFIREVPLNTIIFMGRVANPCVK</seq1>
<seq2>VDICTAKPRDIPMNPM-CIYRSPAT---NRRVWELSKANSRFATTFYQHLADSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQIHFFFAKLNCRLYRKANKSSKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAINKWVSNKTEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESCSASMMYQEGKFRYRRVAEGTQVLELPFKGDDITMVLILPKPEKSLAKVEKELTPEVLQEWLDELEEMMLVVHMPRFRIEDGFSLKEQLQDMGLVDLFSPEKSKLPGIVAEGRDDLYVSDAFHKAFLEVNEEGSEAAASTAVVIAGRSLPNRVTFKANRPFLVFIREVPLNTIIFMGRVANPCV-</seq2>
<ss_1>--------- HHHHHHHHHHHHHHHHHHHHHH EEE HHHHHHHHHHGGGG HHHHHHHHHEEGGG HHHHHHHHHHHHH EEEEEEEEEEE HHHHHHHHH HHHHHHHHHHHHHHH EEEEEEEEEEE EEEEEEEEEEEEEEGGGEEEEEE EEEEEEE HHHHHH HHHHHHH EEEEEEEEE EEEEEEEEEHHHHHH EEEEEEEEEE ---- EEEEEEE EEEEE </ss_1>
<ss_2> HHHH - ---HHHHHHHHHHHHHHHHHHHHHHH EEE HHHHHHHHHHH HHHHHHHH GGG HHHHHHHHHHHH EEEEEEEEEE HHHHHHH HHHHHHHHHHHHHHH HHHH EEEEEEEEEEEEE EEEEE EEE EEEEEEEEEEE EEEEEEEE EEEEEEEE HHHGGG HHHHHHHHHH EEEEEEEEE EEEEEEEEEHHHHHH GGG EEEEEEEEEE EEEEEEEEEEEEE EEEEEEEE EEEEEEEE -</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1ANT</pdbID>
<pdbChain>I</pdbChain>
<entryIDChain>1ANTI</entryIDChain>
<sequence>AASTA----VVIAG</sequence>
<secondary-structure> ---- </secondary-structure>
<atom-coordinate>
<line>ATOM 5989 CA ALA I 383 -10.320 15.616 4.599 1.00119.70 C </line>
<line>ATOM 5994 CA ALA I 384 -7.643 12.888 4.706 1.00101.29 C </line>
<line>ATOM 5999 CA SER I 385 -4.401 12.631 6.760 1.00108.76 C </line>
<line>ATOM 6005 CA THR I 386 -5.764 10.961 9.895 1.00 44.53 C </line>
<line>ATOM 6012 CA ALA I 387 -3.310 8.018 10.133 1.00 21.27 C </line>
<line>ATOM 6017 CA VAL I 388 -4.344 5.064 12.238 1.00 24.75 C </line>
<line>ATOM 6024 CA VAL I 389 -2.568 3.157 15.080 1.00 19.31 C </line>
<line>ATOM 6031 CA ILE I 390 -3.642 0.007 16.888 1.00 23.73 C </line>
<line>ATOM 6039 CA ALA I 391 -2.037 -1.551 19.923 1.00 22.09 C </line>
<line>ATOM 6044 CA GLY I 392 -2.436 -5.125 21.075 1.00 22.58 C </line>
</atom-coordinate>
<distance-map>
<line> GLY ALA ILE VAL VAL ALA THR SER ALA ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 27.64 24.46 20.96 18.03 14.33 11.73 8.39 6.97 3.82 </line>
<line>ALA CA 24.89 21.71 18.17 15.10 11.35 8.48 5.85 3.85 </line>
<line>SER CA 22.89 19.49 16.20 12.74 9.34 5.82 3.80 </line>
<line>THR CA 19.87 16.46 13.17 9.90 6.50 3.84 </line>
<line>ALA CA 17.12 13.75 10.48 6.98 3.77 </line>
<line>VAL CA 13.62 10.40 6.91 3.86 </line>
<line>VAL CA 10.22 6.78 3.79 </line>
<line>ILE CA 6.73 3.77 </line>
<line>ALA CA 3.78 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>ALA CA 191</line>
<line>ALA CA 196</line>
<line>SER CA 147</line>
<line>THR CA 176</line>
<line>ALA CA 180</line>
<line>VAL CA 203</line>
<line>VAL CA 154</line>
<line>ILE CA 148</line>
<line>ALA CA 80</line>
<line>GLY CA 75</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2B4X</pdbID>
<pdbChain>L</pdbChain>
<entryIDChain>2B4XL</entryIDChain>
<sequence>EGSEAAASTAVVIA</sequence>
<secondary-structure>EEEEEEEEEEEEE </secondary-structure>
<atom-coordinate>
<line>ATOM 5912 CA GLU L 378 6.220 -2.905 -31.921 1.00 73.55 C </line>
<line>ATOM 5921 CA GLY L 379 2.579 -3.869 -31.600 1.00 69.77 C </line>
<line>ATOM 5925 CA SER L 380 0.239 -6.566 -32.842 1.00 64.03 C </line>
<line>ATOM 5931 CA GLU L 381 -1.361 -7.612 -36.118 1.00 60.25 C </line>
<line>ATOM 5940 CA ALA L 382 -4.799 -9.220 -36.133 1.00 54.21 C </line>
<line>ATOM 5945 CA ALA L 383 -6.779 -10.450 -39.140 1.00 50.58 C </line>
<line>ATOM 5950 CA ALA L 384 -9.897 -12.544 -39.471 1.00 50.30 C </line>
<line>ATOM 5955 CA SER L 385 -12.299 -13.677 -42.110 1.00 49.85 C </line>
<line>ATOM 5961 CA THR L 386 -15.784 -15.229 -42.135 1.00 46.46 C </line>
<line>ATOM 5968 CA ALA L 387 -17.265 -17.205 -44.997 1.00 46.42 C </line>
<line>ATOM 5973 CA VAL L 388 -20.959 -18.116 -45.188 1.00 56.34 C </line>
<line>ATOM 5980 CA VAL L 389 -21.520 -20.779 -47.874 1.00 66.45 C </line>
<line>ATOM 5987 CA ILE L 390 -24.948 -21.313 -49.450 1.00 73.29 C </line>
<line>ATOM 5995 CA ALA L 391 -25.573 -24.906 -50.555 1.00 82.73 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ILE VAL VAL ALA THR SER ALA ALA ALA GLU SER GLY GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 42.92 40.22 36.65 33.85 30.45 27.21 23.72 20.24 16.67 13.38 9.86 7.07 3.78 </line>
<line>GLY CA 39.93 37.16 33.64 30.69 27.41 24.03 20.69 17.11 13.70 10.18 7.07 3.78 </line>
<line>SER CA 36.28 33.58 30.02 27.11 23.82 20.45 17.14 13.51 10.20 6.58 3.79 </line>
<line>GLU CA 33.07 30.36 26.79 24.01 20.59 17.39 13.87 10.41 6.82 3.80 </line>
<line>ALA CA 29.76 27.01 23.47 20.55 17.25 13.89 10.58 6.94 3.80 </line>
<line>ALA CA 26.32 23.55 20.01 17.22 13.78 10.63 7.05 3.77 </line>
<line>ALA CA 22.83 20.08 16.54 13.64 10.32 7.00 3.74 </line>
<line>SER CA 19.33 16.50 12.99 10.21 6.74 3.82 </line>
<line>THR CA 16.14 13.21 9.83 6.67 3.78 </line>
<line>ALA CA 12.62 9.78 6.26 3.81 </line>
<line>VAL CA 9.81 6.66 3.82 </line>
<line>VAL CA 6.38 3.81 </line>
<line>ILE CA 3.81 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>GLU CA 330</line>
<line>GLY CA 420</line>
<line>SER CA 475</line>
<line>GLU CA 446</line>
<line>ALA CA 525</line>
<line>ALA CA 513</line>
<line>ALA CA 552</line>
<line>SER CA 563</line>
<line>THR CA 586</line>
<line>ALA CA 584</line>
<line>VAL CA 581</line>
<line>VAL CA 550</line>
<line>ILE CA 527</line>
<line>ALA CA 406</line>
</n14>
</entryChain>
<parallel>
<x>1.8589999675750732</x>
<y>19.32699966430664</y>
<z>48.37200164794922</z>
</parallel>
<rotation>
<x>-0.5640000104904175</x>
<y>0.824999988079071</y>
<z>0.007000000216066837</z>
<x>-0.3610000014305115</x>
<y>-0.23800000548362732</y>
<z>-0.9020000100135803</z>
<x>0.7429999709129333</x>
<y>0.5120000243186951</y>
<z>-0.4320000112056732</z>
</rotation>
<rmsd>7.309442043304443</rmsd>
<dmax>9.576603889465332</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2B4X</pdbID>
<pdbChain>L</pdbChain>
<entryIDChain>2B4XL</entryIDChain>
<sequence>PMNPM-CIYRS</sequence>
<secondary-structure> - </secondary-structure>
<atom-coordinate>
<line>ATOM 3277 CA PRO L 16 -33.818 3.225 -49.296 1.00141.08 C </line>
<line>ATOM 3284 CA MET L 17 -33.078 -0.273 -47.895 1.00139.82 C </line>
<line>ATOM 3289 CA ASN L 18 -36.412 -2.060 -48.262 1.00136.03 C </line>
<line>ATOM 3294 CA PRO L 19 -35.589 -5.846 -48.016 1.00130.17 C </line>
<line>ATOM 3301 CA MET L 20 -37.979 -8.694 -48.750 1.00119.49 C </line>
<line>ATOM 3309 CA CYS L 21 -39.053 -9.680 -45.254 1.00113.37 C </line>
<line>ATOM 3315 CA ILE L 22 -39.325 -7.557 -42.147 1.00116.29 C </line>
<line>ATOM 3323 CA TYR L 23 -39.356 -8.928 -38.622 1.00120.30 C </line>
<line>ATOM 3335 CA ARG L 24 -41.201 -7.307 -35.714 1.00125.85 C </line>
<line>ATOM 3340 CA SER L 25 -39.906 -7.595 -32.148 1.00129.67 C </line>
</atom-coordinate>
<distance-map>
<line> SER ARG TYR ILE CYS MET PRO ASN MET PRO </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>PRO CA 21.17 18.71 17.10 14.06 14.50 12.64 9.33 5.98 3.84 </line>
<line>MET CA 18.66 16.24 14.15 11.19 11.45 9.78 6.11 3.80 </line>
<line>ASN CA 17.39 14.42 12.20 8.72 8.61 6.83 3.88 </line>
<line>PRO CA 16.54 13.60 10.58 7.16 5.86 3.79 </line>
<line>MET CA 16.75 13.50 10.22 6.83 3.79 </line>
<line>CYS CA 13.30 10.06 6.68 3.77 </line>
<line>ILE CA 10.02 6.71 3.78 </line>
<line>TYR CA 6.63 3.81 </line>
<line>ARG CA 3.80 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>PRO CA 234</line>
<line>MET CA 328</line>
<line>ASN CA 271</line>
<line>PRO CA 333</line>
<line>MET CA 302</line>
<line>CYS CA 295</line>
<line>ILE CA 287</line>
<line>TYR CA 291</line>
<line>ARG CA 222</line>
<line>SER CA 203</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1ANT</pdbID>
<pdbChain>I</pdbChain>
<entryIDChain>1ANTI</entryIDChain>
<sequence>IPMNPMCIYRS</sequence>
<secondary-structure> </secondary-structure>
<atom-coordinate>
<line>ATOM 3161 CA ILE I 15 -53.393 19.918 8.233 1.00 88.81 C </line>
<line>ATOM 3169 CA PRO I 16 -52.377 19.894 4.529 1.00122.18 C </line>
<line>ATOM 3176 CA MET I 17 -55.823 20.628 3.041 1.00142.90 C </line>
<line>ATOM 3184 CA ASN I 18 -57.026 19.453 -0.375 1.00155.95 C </line>
<line>ATOM 3192 CA PRO I 19 -60.066 20.102 -2.670 1.00156.59 C </line>
<line>ATOM 3199 CA MET I 20 -61.838 17.666 -5.080 1.00148.59 C </line>
<line>ATOM 3207 CA CYS I 21 -58.733 16.024 -6.547 1.00 84.47 C </line>
<line>ATOM 3213 CA ILE I 22 -57.915 13.348 -3.934 1.00 55.97 C </line>
<line>ATOM 3221 CA TYR I 23 -57.564 9.917 -5.519 1.00 54.38 C </line>
<line>ATOM 3233 CA ARG I 24 -58.559 6.809 -3.596 1.00 73.52 C </line>
<line>ATOM 3244 CA SER I 25 -55.864 4.138 -3.189 1.00 62.42 C </line>
</atom-coordinate>
<distance-map>
<line> SER ARG TYR ILE CYS MET PRO ASN MET PRO ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 19.64 18.40 17.51 14.55 16.19 15.93 12.78 9.35 5.78 3.84 </line>
<line>PRO CA 17.89 16.60 15.08 12.05 13.34 13.67 10.54 6.77 3.82 </line>
<line>MET CA 17.63 15.57 13.82 10.30 11.03 10.53 7.13 3.81 </line>
<line>ASN CA 15.61 13.14 10.85 7.12 7.26 6.96 3.86 </line>
<line>PRO CA 16.52 13.41 10.87 7.20 5.78 3.86 </line>
<line>MET CA 14.91 11.44 8.86 5.95 3.81 </line>
<line>CYS CA 12.68 9.68 6.30 3.83 </line>
<line>ILE CA 9.46 6.58 3.80 </line>
<line>TYR CA 6.46 3.79 </line>
<line>ARG CA 3.82 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>ILE CA 225</line>
<line>PRO CA 310</line>
<line>MET CA 272</line>
<line>ASN CA 290</line>
<line>PRO CA 222</line>
<line>MET CA 193</line>
<line>CYS CA 284</line>
<line>ILE CA 319</line>
<line>TYR CA 326</line>
<line>ARG CA 284</line>
<line>SER CA 294</line>
</n14>
</entryChain>
<parallel>
<x>19.785999298095703</x>
<y>-22.386999130249023</y>
<z>-45.625</z>
</parallel>
<rotation>
<x>0.9150000214576721</x>
<y>0.19699999690055847</y>
<z>0.3529999852180481</z>
<x>0.38499999046325684</x>
<y>-0.16300000250339508</y>
<z>-0.9079999923706055</z>
<x>-0.12200000137090683</x>
<y>0.9670000076293945</y>
<z>-0.22499999403953552</z>
</rotation>
<rmsd>1.0783300399780273</rmsd>
<dmax>1.8783509731292725</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2B4X</pdbID>
<pdbChain>L</pdbChain>
<entryIDChain>2B4XL</entryIDChain>
<sequence>RSPAT---NRRVW</sequence>
<secondary-structure> ---HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 3335 CA ARG L 24 -41.201 -7.307 -35.714 1.00125.85 C </line>
<line>ATOM 3340 CA SER L 25 -39.906 -7.595 -32.148 1.00129.67 C </line>
<line>ATOM 3346 CA PRO L 26 -42.416 -8.393 -29.336 1.00130.66 C </line>
<line>ATOM 3353 CA ALA L 43 -31.487 7.866 -31.469 1.00122.91 C </line>
<line>ATOM 3358 CA THR L 44 -29.006 6.898 -34.232 1.00121.18 C </line>
<line>ATOM 3365 CA ASN L 45 -25.725 7.335 -32.326 1.00117.81 C </line>
<line>ATOM 3373 CA ARG L 46 -27.704 5.977 -29.381 1.00110.83 C </line>
<line>ATOM 3378 CA ARG L 47 -28.720 3.064 -31.621 1.00104.82 C </line>
<line>ATOM 3383 CA VAL L 48 -25.244 2.458 -33.063 1.00 98.33 C </line>
<line>ATOM 3390 CA TRP L 49 -24.192 2.103 -29.447 1.00 95.79 C </line>
</atom-coordinate>
<distance-map>
<line> TRP VAL ARG ARG ASN THR ALA PRO SER ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 20.42 18.89 16.74 19.97 21.57 18.78 18.51 6.58 3.80 </line>
<line>SER CA 18.66 17.80 15.46 18.46 20.59 18.25 17.62 3.85 </line>
<line>PRO CA 21.03 20.65 18.00 20.57 23.13 20.92 19.71 </line>
<line>ALA CA 9.51 8.41 5.54 4.72 5.85 3.84 </line>
<line>THR CA 8.31 5.94 4.65 5.11 3.82 </line>
<line>ASN CA 6.17 4.96 5.26 3.80 </line>
<line>ARG CA 5.23 5.66 3.81 </line>
<line>ARG CA 5.11 3.81 </line>
<line>VAL CA 3.78 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ARG CA 222</line>
<line>SER CA 203</line>
<line>PRO CA 125</line>
<line>ALA CA 160</line>
<line>THR CA 242</line>
<line>ASN CA 249</line>
<line>ARG CA 199</line>
<line>ARG CA 290</line>
<line>VAL CA 359</line>
<line>TRP CA 330</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1ANT</pdbID>
<pdbChain>I</pdbChain>
<entryIDChain>1ANTI</entryIDChain>
<sequence>RSPEKKATNRRVW</sequence>
<secondary-structure> HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 3233 CA ARG I 24 -58.559 6.809 -3.596 1.00 73.52 C </line>
<line>ATOM 3244 CA SER I 25 -55.864 4.138 -3.189 1.00 62.42 C </line>
<line>ATOM 3250 CA PRO I 26 -57.186 0.573 -3.539 1.00 67.67 C </line>
<line>ATOM 3257 CA GLU I 27 -57.742 -1.350 -0.311 1.00106.31 C </line>
<line>ATOM 3266 CA LYS I 28 -54.799 -3.732 -0.815 1.00154.71 C </line>
<line>ATOM 3275 CA LYS I 29 -52.007 -2.169 -2.925 1.00167.29 C </line>
<line>ATOM 3284 CA ALA I 43 -42.652 -4.192 12.223 1.00137.55 C </line>
<line>ATOM 3289 CA THR I 44 -45.104 -1.571 13.553 1.00161.01 C </line>
<line>ATOM 3296 CA ASN I 45 -48.093 0.314 12.039 1.00142.79 C </line>
<line>ATOM 3304 CA ARG I 46 -46.560 3.730 11.167 1.00 80.19 C </line>
<line>ATOM 3315 CA ARG I 47 -47.052 6.156 8.252 1.00 59.95 C </line>
<line>ATOM 3326 CA VAL I 48 -43.302 6.744 7.733 1.00 42.53 C </line>
<line>ATOM 3333 CA TRP I 49 -42.791 2.946 7.582 1.00 24.02 C </line>
</atom-coordinate>
<distance-map>
<line> TRP VAL ARG ARG ASN THR ALA LYS LYS GLU PRO SER ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 19.71 19.00 16.53 19.27 19.90 23.35 24.99 11.13 11.53 8.83 6.39 3.82 </line>
<line>SER CA 16.98 16.85 14.58 17.11 17.52 20.70 21.94 7.40 8.29 6.48 3.82 </line>
<line>PRO CA 18.34 18.92 16.52 18.42 18.04 21.04 21.96 5.89 5.63 3.80 </line>
<line>GLU CA 17.44 18.40 15.62 16.81 15.76 18.76 19.82 6.36 3.82 </line>
<line>LYS CA 16.10 17.75 15.49 16.34 15.05 17.47 17.83 3.83 </line>
<line>LYS CA 14.88 16.40 14.79 16.22 15.67 17.88 17.92 </line>
<line>ALA CA 8.52 11.84 11.93 8.90 7.07 3.83 </line>
<line>THR CA 7.84 10.31 9.57 5.99 3.84 </line>
<line>ASN CA 7.41 9.10 7.04 3.84 </line>
<line>ARG CA 5.26 5.61 3.82 </line>
<line>ARG CA 5.38 3.83 </line>
<line>VAL CA 3.84 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ARG CA 284</line>
<line>SER CA 294</line>
<line>PRO CA 208</line>
<line>GLU CA 165</line>
<line>LYS CA 175</line>
<line>LYS CA 245</line>
<line>ALA CA 159</line>
<line>THR CA 138</line>
<line>ASN CA 168</line>
<line>ARG CA 252</line>
<line>ARG CA 346</line>
<line>VAL CA 380</line>
<line>TRP CA 362</line>
</n14>
</entryChain>
<parallel>
<x>19.961000442504883</x>
<y>-1.0989999771118164</y>
<z>-34.52899932861328</z>
</parallel>
<rotation>
<x>0.4869999885559082</x>
<y>0.12300000339746475</y>
<z>0.8650000095367432</z>
<x>0.46700000762939453</x>
<y>-0.8730000257492065</y>
<z>-0.13899999856948853</z>
<x>0.7379999756813049</x>
<y>0.47200000286102295</y>
<z>-0.4830000102519989</z>
</rotation>
<rmsd>6.848560810089111</rmsd>
<dmax>11.010305404663086</dmax>
</indel>