NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1AO5A-2AGEX
confEVID 1AO5A-2AGEX
pdbIDA 1AO5
pdbIDB 2AGE
pdbChainA A
pdbChainB X
identity 0.368600010871887
indelSize 3
alignment <alignment>
<seq1>VVGGFNCEKNSQPWQVAVYYQKEHICGGVLLDRNWVLTAAHCYVDQYEVWLGKNKLFQEEPSAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALPTKEPKPGSKCLASGWGSITPT-WQKPDDLQCVFITLLPNENCAKVYLQKVTDVMLCAGEMGGGKDTCRDDSGGPLICDGILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTMMKNA</seq1>
<seq2>IVGGYTCGANTVPYQVSLNSG-YHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSN-----------TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKLQGIVSWGS-GCAQKNKPGVYTKVCNYVSWIKQTIASN-</seq2>
<ss_1> EEEEEEE EEEEEEEEEEEEE EEEE EEEEE GGG EEEEE EEEEEEE - EEEEEEEEE HHHHHH EEEEEE EEE EEEE EEEEE EEEEEGGGGHHHHHHHH </ss_1>
<ss_2> EEEEEE - EEEEEEEEEEEEE GGG EEEEE EEEE EEEEE ----------- EEEEE EEEEEEE EEEEEEEE HHHHHHH EEEEE EEE EEEEE EEEEEEEE - EEEEEEEEGGGHHHHHHHHH -</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1AO5</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1AO5A</entryIDChain>
<sequence>SITPT-WQKPD</sequence>
<secondary-structure> - </secondary-structure>
<atom-coordinate>
<line>ATOM 1053 CA SER A 143 27.280 11.187 90.813 1.00 29.45 C </line>
<line>ATOM 1059 CA ILE A 144 27.760 14.341 92.873 1.00 46.16 C </line>
<line>ATOM 1067 CA THR A 145 24.013 14.957 92.581 1.00 42.70 C </line>
<line>ATOM 1074 CA PRO A 146 21.449 12.725 94.366 1.00 63.49 C </line>
<line>ATOM 1081 CA THR A 147 19.652 11.755 91.151 1.00 81.40 C </line>
<line>ATOM 1088 CA TRP A 149 23.160 12.176 87.667 1.00 47.25 C </line>
<line>ATOM 1102 CA GLN A 150 26.405 14.105 87.169 1.00 48.15 C </line>
<line>ATOM 1111 CA LYS A 151 29.937 12.799 87.305 1.00 62.54 C </line>
<line>ATOM 1120 CA PRO A 152 32.795 15.000 88.591 1.00 55.13 C </line>
<line>ATOM 1127 CA ASP A 153 36.153 15.598 87.023 1.00 35.85 C </line>
</atom-coordinate>
<distance-map>
<line> ASP PRO LYS GLN TRP THR PRO THR ILE SER </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 10.61 7.06 4.69 4.75 5.28 7.66 7.00 5.29 3.80 </line>
<line>ILE CA 10.31 6.64 6.17 5.87 7.28 8.68 6.68 3.81 </line>
<line>THR CA 13.37 9.65 8.22 5.98 5.71 5.60 3.84 </line>
<line>PRO CA 16.68 12.93 11.04 8.85 6.94 3.81 </line>
<line>THR CA 17.44 13.78 11.03 8.18 4.96 </line>
<line>TRP CA 13.45 10.08 6.82 3.81 </line>
<line>GLN CA 9.86 6.61 3.77 </line>
<line>LYS CA 6.82 3.83 </line>
<line>PRO CA 3.75 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>SER CA 355</line>
<line>ILE CA 318</line>
<line>THR CA 250</line>
<line>PRO CA 253</line>
<line>THR CA 197</line>
<line>TRP CA 207</line>
<line>GLN CA 235</line>
<line>LYS CA 323</line>
<line>PRO CA 326</line>
<line>ASP CA 295</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2AGE</pdbID>
<pdbChain>X</pdbChain>
<entryIDChain>2AGEX</entryIDChain>
<sequence>NTKSSGTSYPD</sequence>
<secondary-structure> </secondary-structure>
<atom-coordinate>
<line>ATOM 929 CA ASN X 143 9.943 59.234 13.140 1.00 14.26 C </line>
<line>ATOM 937 CA THR X 144 8.048 57.157 10.527 1.00 14.35 C </line>
<line>ATOM 944 CA LYS X 145 4.709 58.996 10.922 1.00 19.26 C </line>
<line>ATOM 950 CA SER X 146 3.518 62.250 9.355 1.00 26.46 C </line>
<line>ATOM 956 CA SER X 147 0.979 62.622 12.199 1.00 31.60 C </line>
<line>ATOM 961 CA GLY X 148 1.968 61.426 15.637 1.00 28.66 C </line>
<line>ATOM 965 CA THR X 149 5.058 59.401 16.359 1.00 24.54 C </line>
<line>ATOM 972 CA SER X 150 6.590 56.002 15.795 1.00 20.24 C </line>
<line>ATOM 978 CA TYR X 151 10.327 55.387 16.063 1.00 16.81 C </line>
<line>ATOM 990 CA PRO X 152 11.792 52.357 14.301 1.00 15.07 C </line>
<line>ATOM 997 CA ASP X 153 14.216 49.791 15.593 1.00 14.78 C </line>
</atom-coordinate>
<distance-map>
<line> ASP PRO TYR SER THR GLY SER SER LYS THR ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 10.65 7.22 4.85 5.36 5.85 8.64 9.63 8.04 5.69 3.84 </line>
<line>THR CA 10.86 7.16 6.24 5.59 6.93 9.02 9.09 6.92 3.83 </line>
<line>LYS CA 14.03 10.28 8.43 6.02 5.46 5.97 5.36 3.80 </line>
<line>SER CA 17.57 13.81 11.77 9.48 7.72 6.52 3.83 </line>
<line>SER CA 18.74 15.06 12.44 9.39 6.66 3.77 </line>
<line>GLY CA 16.89 13.44 10.32 7.13 3.76 </line>
<line>THR CA 13.30 9.96 6.63 3.77 </line>
<line>SER CA 9.84 6.53 3.80 </line>
<line>TYR CA 6.83 3.80 </line>
<line>PRO CA 3.76 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>ASN CA 335</line>
<line>THR CA 298</line>
<line>LYS CA 218</line>
<line>SER CA 240</line>
<line>SER CA 163</line>
<line>GLY CA 133</line>
<line>THR CA 166</line>
<line>SER CA 205</line>
<line>TYR CA 278</line>
<line>PRO CA 304</line>
<line>ASP CA 302</line>
</n14>
</entryChain>
<parallel>
<x>18.81100082397461</x>
<y>-45.875999450683594</y>
<z>77.44599914550781</z>
</parallel>
<rotation>
<x>0.8849999904632568</x>
<y>-0.4490000009536743</y>
<z>0.12700000405311584</z>
<x>-0.4650000035762787</x>
<y>-0.8289999961853027</y>
<z>0.3100000023841858</z>
<x>-0.032999999821186066</x>
<y>-0.3330000042915344</y>
<z>-0.9419999718666077</z>
</rotation>
<rmsd>0.7332590222358704</rmsd>
<dmax>1.3861709833145142</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2AGE</pdbID>
<pdbChain>X</pdbChain>
<entryIDChain>2AGEX</entryIDChain>
<sequence>SLNSG-YHFCG</sequence>
<secondary-structure>EEE - EE</secondary-structure>
<atom-coordinate>
<line>ATOM 116 CA SER X 32 23.681 57.016 15.231 1.00 8.41 C </line>
<line>ATOM 122 CA LEU X 33 24.581 59.759 17.724 1.00 8.47 C </line>
<line>ATOM 130 CA ASN X 34 23.650 58.493 21.169 1.00 9.08 C </line>
<line>ATOM 138 CA SER X 37 23.300 60.193 24.559 1.00 11.57 C </line>
<line>ATOM 144 CA GLY X 38 21.586 57.319 26.337 1.00 11.22 C </line>
<line>ATOM 148 CA TYR X 39 19.172 57.248 23.390 1.00 10.60 C </line>
<line>ATOM 160 CA HIS X 40 19.380 57.850 19.647 1.00 10.23 C </line>
<line>ATOM 170 CA PHE X 41 19.082 61.584 19.047 1.00 11.97 C </line>
<line>ATOM 181 CA CYS X 42 20.439 62.262 15.557 1.00 10.18 C </line>
<line>ATOM 191 CA GLY X 43 22.216 60.752 12.629 1.00 7.81 C </line>
</atom-coordinate>
<distance-map>
<line> GLY CYS PHE HIS TYR GLY SER ASN LEU SER </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 4.78 6.18 7.52 6.22 9.32 11.31 9.86 6.12 3.81 </line>
<line>LEU CA 5.70 5.30 5.94 5.86 8.23 9.44 6.97 3.79 </line>
<line>ASN CA 8.95 7.48 5.91 4.58 5.15 5.69 3.81 </line>
<line>SER CA 11.99 9.67 7.08 6.71 5.20 3.79 </line>
<line>GLY CA 14.15 11.91 8.81 7.06 3.81 </line>
<line>TYR CA 11.72 9.39 6.14 3.80 </line>
<line>HIS CA 8.11 6.11 3.79 </line>
<line>PHE CA 7.19 3.81 </line>
<line>CYS CA 3.74 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>SER CA 539</line>
<line>LEU CA 467</line>
<line>ASN CA 361</line>
<line>SER CA 235</line>
<line>GLY CA 193</line>
<line>TYR CA 267</line>
<line>HIS CA 378</line>
<line>PHE CA 366</line>
<line>CYS CA 478</line>
<line>GLY CA 559</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AO5</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1AO5A</entryIDChain>
<sequence>AVYYQKEHICG</sequence>
<secondary-structure>EEEE EE</secondary-structure>
<atom-coordinate>
<line>ATOM 127 CA ALA A 32 38.634 3.575 87.936 1.00 52.64 C </line>
<line>ATOM 132 CA VAL A 33 36.955 0.690 86.113 1.00 32.75 C </line>
<line>ATOM 139 CA TYR A 34 36.106 1.610 82.497 1.00 65.17 C </line>
<line>ATOM 151 CA TYR A 35 34.198 -0.029 79.650 1.00 66.99 C </line>
<line>ATOM 163 CA GLN A 36 35.224 1.366 76.265 1.00 77.10 C </line>
<line>ATOM 172 CA LYS A 38 35.800 5.124 76.763 1.00 68.66 C </line>
<line>ATOM 181 CA GLU A 39 33.550 5.508 79.797 1.00 52.61 C </line>
<line>ATOM 190 CA HIS A 40 33.965 5.012 83.545 1.00 49.85 C </line>
<line>ATOM 200 CA ILE A 41 31.381 2.696 85.085 1.00 33.06 C </line>
<line>ATOM 208 CA CYS A 42 32.631 1.694 88.523 1.00 35.98 C </line>
<line>ATOM 214 CA GLY A 43 35.326 1.957 91.178 1.00 26.92 C </line>
</atom-coordinate>
<distance-map>
<line> GLY CYS ILE HIS GLU LYS GLN TYR TYR VAL ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 4.91 6.32 7.84 6.57 9.79 11.63 12.36 10.07 6.31 3.80 </line>
<line>VAL CA 5.47 5.05 6.01 5.85 8.64 10.41 10.02 7.06 3.83 </line>
<line>TYR CA 8.72 6.96 5.50 4.15 5.39 6.73 6.30 3.80 </line>
<line>TYR CA 11.75 9.17 6.70 6.37 5.58 6.12 3.80 </line>
<line>GLN CA 14.93 12.53 9.71 8.24 5.70 3.83 </line>
<line>LYS CA 14.77 12.65 9.73 7.03 3.80 </line>
<line>GLU CA 12.05 9.57 6.37 3.80 </line>
<line>HIS CA 8.33 6.13 3.80 </line>
<line>ILE CA 7.30 3.79 </line>
<line>CYS CA 3.79 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>ALA CA 532</line>
<line>VAL CA 494</line>
<line>TYR CA 399</line>
<line>TYR CA 275</line>
<line>GLN CA 208</line>
<line>LYS CA 224</line>
<line>GLU CA 287</line>
<line>HIS CA 400</line>
<line>ILE CA 399</line>
<line>CYS CA 495</line>
<line>GLY CA 543</line>
</n14>
</entryChain>
<parallel>
<x>-13.197999954223633</x>
<y>56.12900161743164</y>
<z>-61.722999572753906</z>
</parallel>
<rotation>
<x>0.7070000171661377</x>
<y>-0.6869999766349792</y>
<z>-0.16699999570846558</z>
<x>-0.7049999833106995</x>
<y>-0.6679999828338623</y>
<z>-0.23899999260902405</z>
<x>0.05299999937415123</x>
<y>0.28700000047683716</y>
<z>-0.9570000171661377</z>
</rotation>
<rmsd>0.5922049880027771</rmsd>
<dmax>1.2470680475234985</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2AGE</pdbID>
<pdbChain>X</pdbChain>
<entryIDChain>2AGEX</entryIDChain>
<sequence>VSWGS-GCAQK</sequence>
<secondary-structure>EEE - </secondary-structure>
<atom-coordinate>
<line>ATOM 1415 CA VAL X 213 19.140 66.297 7.140 1.00 8.54 C </line>
<line>ATOM 1422 CA SER X 214 18.386 69.783 8.535 1.00 9.02 C </line>
<line>ATOM 1428 CA TRP X 215 14.802 71.023 8.787 1.00 10.73 C </line>
<line>ATOM 1442 CA GLY X 216 11.323 71.244 7.297 1.00 13.01 C </line>
<line>ATOM 1446 CA SER X 217 7.760 72.315 8.064 1.00 16.72 C </line>
<line>ATOM 1454 CA GLY X 219 6.065 69.188 9.573 1.00 18.93 C </line>
<line>ATOM 1458 CA CYS X 220 7.092 65.985 7.861 1.00 18.03 C </line>
<line>ATOM 1465 CA ALA X 221A 5.810 64.483 4.666 1.00 16.35 C </line>
<line>ATOM 1470 CA GLN X 221 3.283 67.293 4.257 1.00 18.21 C </line>
<line>ATOM 1479 CA LYS X 222 2.084 68.448 0.879 1.00 18.79 C </line>
</atom-coordinate>
<distance-map>
<line> LYS GLN ALA CYS GLY SER GLY TRP SER VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 18.30 16.15 13.68 12.07 13.61 12.91 9.25 6.62 3.83 </line>
<line>SER CA 18.06 15.89 14.19 11.93 12.38 10.93 7.32 3.80 </line>
<line>TRP CA 15.20 12.93 11.86 9.26 8.96 7.20 3.79 </line>
<line>GLY CA 11.59 9.46 9.11 6.77 6.09 3.80 </line>
<line>SER CA 9.94 7.73 8.76 6.37 3.86 </line>
<line>GLY CA 9.59 6.29 6.80 3.77 </line>
<line>CYS CA 8.94 5.40 3.76 </line>
<line>ALA CA 6.63 3.80 </line>
<line>GLN CA 3.77 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>VAL CA 560</line>
<line>SER CA 498</line>
<line>TRP CA 439</line>
<line>GLY CA 412</line>
<line>SER CA 304</line>
<line>GLY CA 279</line>
<line>CYS CA 343</line>
<line>ALA CA 323</line>
<line>GLN CA 251</line>
<line>LYS CA 211</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AO5</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1AO5A</entryIDChain>
<sequence>TSYGPVPCGKP</sequence>
<secondary-structure>EEE </secondary-structure>
<atom-coordinate>
<line>ATOM 1549 CA THR A 213 30.344 0.189 98.010 1.00 30.87 C </line>
<line>ATOM 1556 CA SER A 214 27.510 -2.224 97.232 1.00 35.93 C </line>
<line>ATOM 1562 CA TYR A 215 24.270 -0.177 97.016 1.00 56.04 C </line>
<line>ATOM 1574 CA GLY A 216 22.227 2.469 98.819 1.00 36.75 C </line>
<line>ATOM 1578 CA PRO A 217 19.049 4.500 98.590 1.00 51.86 C </line>
<line>ATOM 1585 CA VAL A 218 17.874 6.514 95.637 1.00 73.93 C </line>
<line>ATOM 1592 CA PRO A 219 18.037 9.500 96.106 1.00 41.85 C </line>
<line>ATOM 1599 CA CYS A 220 21.526 9.171 97.511 1.00 50.94 C </line>
<line>ATOM 1605 CA GLY A 221 21.930 10.708 100.938 1.00 40.43 C </line>
<line>ATOM 1609 CA LYS A 222 18.287 10.146 101.911 1.00 48.34 C </line>
<line>ATOM 1618 CA PRO A 223 17.810 11.065 105.598 1.00 29.41 C </line>
</atom-coordinate>
<distance-map>
<line> PRO LYS GLY CYS PRO VAL PRO GLY TYR SER THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 18.25 16.12 13.78 12.60 15.55 14.18 12.10 8.47 6.17 3.80 </line>
<line>SER CA 18.46 16.12 14.56 12.87 15.11 13.11 10.89 7.24 3.84 </line>
<line>TYR CA 15.55 12.90 11.80 9.75 11.55 9.36 7.18 3.80 </line>
<line>GLY CA 11.80 9.17 8.51 6.86 8.62 6.74 3.78 </line>
<line>PRO CA 9.68 6.59 7.24 5.40 5.67 3.76 </line>
<line>VAL CA 10.95 7.26 7.88 4.89 3.03 </line>
<line>PRO CA 9.62 5.85 6.32 3.78 </line>
<line>CYS CA 9.10 5.55 3.78 </line>
<line>GLY CA 6.23 3.81 </line>
<line>LYS CA 3.83 </line>
<line>PRO CA </line>
</distance-map>
<n14>
<line>THR CA 557</line>
<line>SER CA 509</line>
<line>TYR CA 487</line>
<line>GLY CA 478</line>
<line>PRO CA 371</line>
<line>VAL CA 291</line>
<line>PRO CA 254</line>
<line>CYS CA 352</line>
<line>GLY CA 329</line>
<line>LYS CA 269</line>
<line>PRO CA 230</line>
</n14>
</entryChain>
<parallel>
<x>-12.574000358581543</x>
<y>63.64099884033203</y>
<z>-90.99800109863281</z>
</parallel>
<rotation>
<x>0.6690000295639038</x>
<y>-0.7239999771118164</y>
<z>-0.16699999570846558</z>
<x>-0.7409999966621399</x>
<y>-0.6679999828338623</y>
<z>-0.07500000298023224</z>
<x>-0.05700000002980232</x>
<y>0.17399999499320984</y>
<z>-0.9829999804496765</z>
</rotation>
<rmsd>1.3373340368270874</rmsd>
<dmax>2.4201810359954834</dmax>
</indel>