NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1AO5B-2AGEX
confEVID 1AO5B-2AGEX
pdbIDA 1AO5
pdbIDB 2AGE
pdbChainA B
pdbChainB X
identity 0.368600010871887
indelSize 3
alignment <alignment>
<seq1>VVGGFNCEKNSQPWQVAVYYQKEHICGGVLLDRNWVLTAAHCYVDQYEVWLGKNKLFQEEPSAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALPTKEPKPGSKCLASGWGSITPT-WQKPDDLQCVFITLLPNENCAKVYLQKVTDVMLCAGEMGGGKDTCRDDSGGPLICDGILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTMMKNA</seq1>
<seq2>IVGGYTCGANTVPYQVSLNSG-YHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSN-----------TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKLQGIVSWGS-GCAQKNKPGVYTKVCNYVSWIKQTIASN-</seq2>
<ss_1> EEEEEEE EEEEEEEEEEEEE EEEEE EEEE EEEEE GGGGG EEEEE EEEEEEE - EEEEEEEEE HHHHHH EEEEEE EEE EEEEE EEEEEEEE EEEEEGGGGHHHHHHHHHH </ss_1>
<ss_2> EEEEEE - EEEEEEEEEEEEE GGG EEEEE EEEE EEEEE ----------- EEEEE EEEEEEE EEEEEEEE HHHHHHH EEEEE EEE EEEEE EEEEEEEE - EEEEEEEEGGGHHHHHHHHH -</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1AO5</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1AO5B</entryIDChain>
<sequence>SITPT-WQKPD</sequence>
<secondary-structure> - </secondary-structure>
<atom-coordinate>
<line>ATOM 2869 CA SER B 143 8.229 8.305 81.613 1.00 23.85 C </line>
<line>ATOM 2875 CA ILE B 144 7.229 11.785 80.419 1.00 29.70 C </line>
<line>ATOM 2883 CA THR B 145 10.722 13.133 81.185 1.00 38.78 C </line>
<line>ATOM 2890 CA PRO B 146 13.687 12.040 78.987 1.00 42.51 C </line>
<line>ATOM 2897 CA THR B 147 15.676 11.061 82.072 1.00 40.66 C </line>
<line>ATOM 2904 CA TRP B 149 12.002 9.455 85.240 1.00 34.09 C </line>
<line>ATOM 2918 CA GLN B 150 8.472 10.666 85.946 1.00 34.62 C </line>
<line>ATOM 2927 CA LYS B 151 5.405 8.629 85.029 1.00 28.34 C </line>
<line>ATOM 2936 CA PRO B 152 1.976 10.083 84.227 1.00 29.84 C </line>
<line>ATOM 2943 CA ASP B 153 -1.435 9.203 85.596 1.00 21.61 C </line>
</atom-coordinate>
<distance-map>
<line> ASP PRO LYS GLN TRP THR PRO THR ILE SER </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 10.49 7.01 4.44 4.94 5.36 7.95 7.12 5.45 3.81 </line>
<line>ILE CA 10.42 6.71 5.88 5.77 7.17 8.64 6.62 3.82 </line>
<line>THR CA 13.52 9.75 7.96 5.82 5.62 5.44 3.85 </line>
<line>PRO CA 16.75 12.98 10.80 8.80 6.97 3.80 </line>
<line>THR CA 17.57 13.90 10.96 8.19 5.11 </line>
<line>TRP CA 13.44 10.10 6.65 3.80 </line>
<line>GLN CA 10.02 6.74 3.79 </line>
<line>LYS CA 6.89 3.81 </line>
<line>PRO CA 3.78 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>SER CA 361</line>
<line>ILE CA 316</line>
<line>THR CA 247</line>
<line>PRO CA 254</line>
<line>THR CA 194</line>
<line>TRP CA 209</line>
<line>GLN CA 228</line>
<line>LYS CA 320</line>
<line>PRO CA 326</line>
<line>ASP CA 306</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2AGE</pdbID>
<pdbChain>X</pdbChain>
<entryIDChain>2AGEX</entryIDChain>
<sequence>NTKSSGTSYPD</sequence>
<secondary-structure> </secondary-structure>
<atom-coordinate>
<line>ATOM 929 CA ASN X 143 9.943 59.234 13.140 1.00 14.26 C </line>
<line>ATOM 937 CA THR X 144 8.048 57.157 10.527 1.00 14.35 C </line>
<line>ATOM 944 CA LYS X 145 4.709 58.996 10.922 1.00 19.26 C </line>
<line>ATOM 950 CA SER X 146 3.518 62.250 9.355 1.00 26.46 C </line>
<line>ATOM 956 CA SER X 147 0.979 62.622 12.199 1.00 31.60 C </line>
<line>ATOM 961 CA GLY X 148 1.968 61.426 15.637 1.00 28.66 C </line>
<line>ATOM 965 CA THR X 149 5.058 59.401 16.359 1.00 24.54 C </line>
<line>ATOM 972 CA SER X 150 6.590 56.002 15.795 1.00 20.24 C </line>
<line>ATOM 978 CA TYR X 151 10.327 55.387 16.063 1.00 16.81 C </line>
<line>ATOM 990 CA PRO X 152 11.792 52.357 14.301 1.00 15.07 C </line>
<line>ATOM 997 CA ASP X 153 14.216 49.791 15.593 1.00 14.78 C </line>
</atom-coordinate>
<distance-map>
<line> ASP PRO TYR SER THR GLY SER SER LYS THR ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 10.65 7.22 4.85 5.36 5.85 8.64 9.63 8.04 5.69 3.84 </line>
<line>THR CA 10.86 7.16 6.24 5.59 6.93 9.02 9.09 6.92 3.83 </line>
<line>LYS CA 14.03 10.28 8.43 6.02 5.46 5.97 5.36 3.80 </line>
<line>SER CA 17.57 13.81 11.77 9.48 7.72 6.52 3.83 </line>
<line>SER CA 18.74 15.06 12.44 9.39 6.66 3.77 </line>
<line>GLY CA 16.89 13.44 10.32 7.13 3.76 </line>
<line>THR CA 13.30 9.96 6.63 3.77 </line>
<line>SER CA 9.84 6.53 3.80 </line>
<line>TYR CA 6.83 3.80 </line>
<line>PRO CA 3.76 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>ASN CA 335</line>
<line>THR CA 298</line>
<line>LYS CA 218</line>
<line>SER CA 240</line>
<line>SER CA 163</line>
<line>GLY CA 133</line>
<line>THR CA 166</line>
<line>SER CA 205</line>
<line>TYR CA 278</line>
<line>PRO CA 304</line>
<line>ASP CA 302</line>
</n14>
</entryChain>
<parallel>
<x>4.031000137329102</x>
<y>-48.24700164794922</y>
<z>69.51599884033203</z>
</parallel>
<rotation>
<x>-0.7440000176429749</x>
<y>-0.5989999771118164</y>
<z>-0.2980000078678131</z>
<x>0.6629999876022339</x>
<y>-0.5989999771118164</y>
<z>-0.4490000009536743</z>
<x>0.09000000357627869</x>
<y>-0.531000018119812</y>
<z>0.8420000076293945</z>
</rotation>
<rmsd>0.6502119898796082</rmsd>
<dmax>1.2052390575408936</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2AGE</pdbID>
<pdbChain>X</pdbChain>
<entryIDChain>2AGEX</entryIDChain>
<sequence>SLNSG-YHFCG</sequence>
<secondary-structure>EEE - EE</secondary-structure>
<atom-coordinate>
<line>ATOM 116 CA SER X 32 23.681 57.016 15.231 1.00 8.41 C </line>
<line>ATOM 122 CA LEU X 33 24.581 59.759 17.724 1.00 8.47 C </line>
<line>ATOM 130 CA ASN X 34 23.650 58.493 21.169 1.00 9.08 C </line>
<line>ATOM 138 CA SER X 37 23.300 60.193 24.559 1.00 11.57 C </line>
<line>ATOM 144 CA GLY X 38 21.586 57.319 26.337 1.00 11.22 C </line>
<line>ATOM 148 CA TYR X 39 19.172 57.248 23.390 1.00 10.60 C </line>
<line>ATOM 160 CA HIS X 40 19.380 57.850 19.647 1.00 10.23 C </line>
<line>ATOM 170 CA PHE X 41 19.082 61.584 19.047 1.00 11.97 C </line>
<line>ATOM 181 CA CYS X 42 20.439 62.262 15.557 1.00 10.18 C </line>
<line>ATOM 191 CA GLY X 43 22.216 60.752 12.629 1.00 7.81 C </line>
</atom-coordinate>
<distance-map>
<line> GLY CYS PHE HIS TYR GLY SER ASN LEU SER </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 4.78 6.18 7.52 6.22 9.32 11.31 9.86 6.12 3.81 </line>
<line>LEU CA 5.70 5.30 5.94 5.86 8.23 9.44 6.97 3.79 </line>
<line>ASN CA 8.95 7.48 5.91 4.58 5.15 5.69 3.81 </line>
<line>SER CA 11.99 9.67 7.08 6.71 5.20 3.79 </line>
<line>GLY CA 14.15 11.91 8.81 7.06 3.81 </line>
<line>TYR CA 11.72 9.39 6.14 3.80 </line>
<line>HIS CA 8.11 6.11 3.79 </line>
<line>PHE CA 7.19 3.81 </line>
<line>CYS CA 3.74 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>SER CA 539</line>
<line>LEU CA 467</line>
<line>ASN CA 361</line>
<line>SER CA 235</line>
<line>GLY CA 193</line>
<line>TYR CA 267</line>
<line>HIS CA 378</line>
<line>PHE CA 366</line>
<line>CYS CA 478</line>
<line>GLY CA 559</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AO5</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1AO5B</entryIDChain>
<sequence>AVYYQKEHICG</sequence>
<secondary-structure>EEEE EE</secondary-structure>
<atom-coordinate>
<line>ATOM 1943 CA ALA B 32 -0.676 -2.238 81.852 1.00 27.72 C </line>
<line>ATOM 1948 CA VAL B 33 1.742 -4.924 83.053 1.00 27.80 C </line>
<line>ATOM 1955 CA TYR B 34 2.557 -5.109 86.766 1.00 26.26 C </line>
<line>ATOM 1967 CA TYR B 35 4.893 -6.971 89.089 1.00 38.49 C </line>
<line>ATOM 1979 CA GLN B 36 2.480 -7.031 92.036 1.00 35.12 C </line>
<line>ATOM 1988 CA LYS B 38 1.552 -3.401 92.799 1.00 35.20 C </line>
<line>ATOM 1997 CA GLU B 39 4.183 -1.841 90.597 1.00 33.15 C </line>
<line>ATOM 2006 CA HIS B 40 3.641 -0.929 86.946 1.00 34.84 C </line>
<line>ATOM 2016 CA ILE B 41 6.583 -2.141 84.873 1.00 28.94 C </line>
<line>ATOM 2024 CA CYS B 42 5.471 -2.298 81.230 1.00 34.32 C </line>
<line>ATOM 2030 CA GLY B 43 2.910 -1.838 78.505 1.00 21.49 C </line>
</atom-coordinate>
<distance-map>
<line> GLY CYS ILE HIS GLU LYS GLN TYR TYR VAL ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 4.92 6.18 7.86 6.80 10.01 11.23 11.69 10.29 6.55 3.81 </line>
<line>VAL CA 5.62 4.91 5.87 5.89 8.51 9.87 9.26 7.11 3.81 </line>
<line>TYR CA 8.89 6.86 5.35 4.32 5.29 6.35 5.61 3.78 </line>
<line>TYR CA 11.93 9.16 6.63 6.53 5.39 6.14 3.81 </line>
<line>GLN CA 14.50 12.17 9.59 8.03 5.65 3.82 </line>
<line>LYS CA 14.44 12.26 9.47 6.69 3.77 </line>
<line>GLU CA 12.16 9.47 6.21 3.80 </line>
<line>HIS CA 8.52 6.16 3.80 </line>
<line>ILE CA 7.36 3.81 </line>
<line>CYS CA 3.77 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>ALA CA 542</line>
<line>VAL CA 506</line>
<line>TYR CA 404</line>
<line>TYR CA 291</line>
<line>GLN CA 229</line>
<line>LYS CA 239</line>
<line>GLU CA 288</line>
<line>HIS CA 404</line>
<line>ILE CA 402</line>
<line>CYS CA 495</line>
<line>GLY CA 556</line>
</n14>
</entryChain>
<parallel>
<x>18.628999710083008</x>
<y>62.58100128173828</y>
<z>-66.01300048828125</z>
</parallel>
<rotation>
<x>-0.503000020980835</x>
<y>0.8379999995231628</y>
<z>0.20999999344348907</z>
<x>-0.7979999780654907</x>
<y>-0.3580000102519989</y>
<z>-0.48399999737739563</z>
<x>-0.3310000002384186</x>
<y>-0.41200000047683716</y>
<z>0.8489999771118164</z>
</rotation>
<rmsd>0.689507007598877</rmsd>
<dmax>1.4161169528961182</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2AGE</pdbID>
<pdbChain>X</pdbChain>
<entryIDChain>2AGEX</entryIDChain>
<sequence>VSWGS-GCAQK</sequence>
<secondary-structure>EEE - </secondary-structure>
<atom-coordinate>
<line>ATOM 1415 CA VAL X 213 19.140 66.297 7.140 1.00 8.54 C </line>
<line>ATOM 1422 CA SER X 214 18.386 69.783 8.535 1.00 9.02 C </line>
<line>ATOM 1428 CA TRP X 215 14.802 71.023 8.787 1.00 10.73 C </line>
<line>ATOM 1442 CA GLY X 216 11.323 71.244 7.297 1.00 13.01 C </line>
<line>ATOM 1446 CA SER X 217 7.760 72.315 8.064 1.00 16.72 C </line>
<line>ATOM 1454 CA GLY X 219 6.065 69.188 9.573 1.00 18.93 C </line>
<line>ATOM 1458 CA CYS X 220 7.092 65.985 7.861 1.00 18.03 C </line>
<line>ATOM 1465 CA ALA X 221A 5.810 64.483 4.666 1.00 16.35 C </line>
<line>ATOM 1470 CA GLN X 221 3.283 67.293 4.257 1.00 18.21 C </line>
<line>ATOM 1479 CA LYS X 222 2.084 68.448 0.879 1.00 18.79 C </line>
</atom-coordinate>
<distance-map>
<line> LYS GLN ALA CYS GLY SER GLY TRP SER VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 18.30 16.15 13.68 12.07 13.61 12.91 9.25 6.62 3.83 </line>
<line>SER CA 18.06 15.89 14.19 11.93 12.38 10.93 7.32 3.80 </line>
<line>TRP CA 15.20 12.93 11.86 9.26 8.96 7.20 3.79 </line>
<line>GLY CA 11.59 9.46 9.11 6.77 6.09 3.80 </line>
<line>SER CA 9.94 7.73 8.76 6.37 3.86 </line>
<line>GLY CA 9.59 6.29 6.80 3.77 </line>
<line>CYS CA 8.94 5.40 3.76 </line>
<line>ALA CA 6.63 3.80 </line>
<line>GLN CA 3.77 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>VAL CA 560</line>
<line>SER CA 498</line>
<line>TRP CA 439</line>
<line>GLY CA 412</line>
<line>SER CA 304</line>
<line>GLY CA 279</line>
<line>CYS CA 343</line>
<line>ALA CA 323</line>
<line>GLN CA 251</line>
<line>LYS CA 211</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AO5</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1AO5B</entryIDChain>
<sequence>TSYGPVPCGKP</sequence>
<secondary-structure>EEE </secondary-structure>
<atom-coordinate>
<line>ATOM 3365 CA THR B 213 8.157 -0.901 71.821 1.00 20.29 C </line>
<line>ATOM 3372 CA SER B 214 11.534 -2.469 72.570 1.00 29.42 C </line>
<line>ATOM 3378 CA TYR B 215 14.458 -0.066 73.110 1.00 31.22 C </line>
<line>ATOM 3390 CA GLY B 216 15.588 3.463 72.311 1.00 26.38 C </line>
<line>ATOM 3394 CA PRO B 217 18.075 6.278 73.022 1.00 38.48 C </line>
<line>ATOM 3401 CA VAL B 218 19.211 7.472 76.424 1.00 55.39 C </line>
<line>ATOM 3408 CA PRO B 219 17.853 10.106 76.811 1.00 47.36 C </line>
<line>ATOM 3415 CA CYS B 220 14.537 9.514 75.089 1.00 27.89 C </line>
<line>ATOM 3421 CA GLY B 221 13.694 11.635 72.069 1.00 49.15 C </line>
<line>ATOM 3425 CA LYS B 222 17.356 12.293 71.313 1.00 45.94 C </line>
<line>ATOM 3434 CA PRO B 223 17.507 14.195 67.996 1.00 41.18 C </line>
</atom-coordinate>
<distance-map>
<line> PRO LYS GLY CYS PRO VAL PRO GLY TYR SER THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 18.16 16.09 13.71 12.64 15.49 14.61 12.30 8.63 6.49 3.80 </line>
<line>SER CA 18.28 15.92 14.28 12.61 14.70 13.14 10.93 7.19 3.82 </line>
<line>TYR CA 15.45 12.82 11.77 9.78 11.34 9.51 7.30 3.79 </line>
<line>GLY CA 11.73 9.06 8.39 6.74 8.34 6.79 3.82 </line>
<line>PRO CA 9.39 6.29 6.99 5.22 5.39 3.78 </line>
<line>VAL CA 10.91 7.27 8.17 5.27 2.99 </line>
<line>PRO CA 9.72 5.94 6.49 3.78 </line>
<line>CYS CA 9.00 5.47 3.79 </line>
<line>GLY CA 6.14 3.80 </line>
<line>LYS CA 3.83 </line>
<line>PRO CA </line>
</distance-map>
<n14>
<line>THR CA 555</line>
<line>SER CA 520</line>
<line>TYR CA 492</line>
<line>GLY CA 468</line>
<line>PRO CA 366</line>
<line>VAL CA 284</line>
<line>PRO CA 249</line>
<line>CYS CA 348</line>
<line>GLY CA 330</line>
<line>LYS CA 262</line>
<line>PRO CA 225</line>
</n14>
</entryChain>
<parallel>
<x>-3.7699999809265137</x>
<y>63.15700149536133</y>
<z>-65.8550033569336</z>
</parallel>
<rotation>
<x>-0.45899999141693115</x>
<y>0.8690000176429749</y>
<z>0.1809999942779541</z>
<x>-0.8740000128746033</x>
<y>-0.4059999883174896</y>
<z>-0.2669999897480011</z>
<x>-0.1589999943971634</x>
<y>-0.2809999883174896</y>
<z>0.9459999799728394</z>
</rotation>
<rmsd>1.3130749464035034</rmsd>
<dmax>2.502638101577759</dmax>
</indel>