NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1AOHA-2VN5A
confEVID 1AOHA-2VN5A
pdbIDA 1AOH
pdbIDB 2VN5
pdbChainA A
pdbChainB A
identity 0.289700001478195
indelSize 3
alignment <alignment>
<seq1>-AVRIKVDTVNAKPGDTVRIPVRFSGIPS-KGIANCDFVYSYDPNVLEIIEIEPGELIVDPNPTKSFDTAVYPDRKMIVFLFAEDSGTGAYAITEDGVFATIVAKVKSGAPNGLSVIKFVEVGGFANNDLVEQ-KTQFFDGGVNVG-</seq1>
<seq2>DSLKVTVGTANGKPGDTVTVPVTFADVAKMKNVGTCNFYLGYDASLLEVVSVDAGPIVK--NAAVNFSSSAS--NGTISFLFLDNTI-TDELITADGVFANIKFKLKSVTAKTTTPVTFKDGGAFGDGTMSKIASVTKTNGSVTIDP</seq2>
<ss_1>- EEEE EEEEEEEEEE - EEEEEEEEE EEE EEEEE EEEEEEE EEEEEEEEE EEEEEEEEEEE EEEEEE EEE -EEEEEEEEEEE -</ss_1>
<ss_2> EEEE EEE EEEEEEEEEE EEEEEEEEEEE EEE EEEEE -- HHHEEEEEEE--EEEEEEEEEE - EEEEEEEEEE EEEEEE EEE EEEEEEEEEEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1AOH</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1AOHA</entryIDChain>
<sequence>DLVEQ-KTQFF</sequence>
<secondary-structure> -EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 926 CA ASP A 131 7.897 26.261 30.967 1.00 12.45 C </line>
<line>ATOM 934 CA LEU A 132 9.206 29.774 31.836 1.00 13.91 C </line>
<line>ATOM 942 CA VAL A 133 7.546 29.384 35.280 1.00 11.82 C </line>
<line>ATOM 949 CA GLU A 134 9.388 31.198 38.071 1.00 11.47 C </line>
<line>ATOM 958 CA GLN A 135 11.010 28.786 40.512 1.00 10.94 C </line>
<line>ATOM 967 CA LYS A 136 11.389 29.327 44.290 1.00 10.42 C </line>
<line>ATOM 972 CA THR A 137 15.024 30.061 45.178 1.00 9.81 C </line>
<line>ATOM 979 CA GLN A 138 17.124 30.310 48.321 1.00 9.82 C </line>
<line>ATOM 984 CA PHE A 139 20.425 32.149 47.994 1.00 9.21 C </line>
<line>ATOM 995 CA PHE A 140 23.442 31.754 50.277 1.00 10.05 C </line>
</atom-coordinate>
<distance-map>
<line> PHE PHE GLN THR LYS GLN GLU VAL LEU ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 25.39 21.94 20.07 16.35 14.11 10.35 8.78 5.34 3.85 </line>
<line>LEU CA 23.38 19.81 18.30 14.56 12.65 8.92 6.40 3.84 </line>
<line>VAL CA 21.98 18.31 16.21 12.42 9.80 6.30 3.80 </line>
<line>GLU CA 18.62 14.87 12.87 9.14 6.80 3.80 </line>
<line>GLN CA 16.08 12.49 10.03 6.29 3.84 </line>
<line>LYS CA 13.68 10.17 7.08 3.81 </line>
<line>THR CA 9.99 6.44 3.79 </line>
<line>GLN CA 6.77 3.79 </line>
<line>PHE CA 3.80 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>ASP CA 186</line>
<line>LEU CA 222</line>
<line>VAL CA 189</line>
<line>GLU CA 229</line>
<line>GLN CA 276</line>
<line>LYS CA 242</line>
<line>THR CA 296</line>
<line>GLN CA 264</line>
<line>PHE CA 330</line>
<line>PHE CA 297</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2VN5</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2VN5A</entryIDChain>
<sequence>TMSKIASVTKT</sequence>
<secondary-structure> EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 895 CA THR A 134 7.594 21.860 25.507 1.00 31.65 C </line>
<line>ATOM 902 CA MET A 135 5.939 23.916 28.286 1.00 31.74 C </line>
<line>ATOM 910 CA SER A 136 8.825 26.429 28.205 1.00 32.27 C </line>
<line>ATOM 916 CA LYS A 137 8.165 30.140 28.714 1.00 31.90 C </line>
<line>ATOM 925 CA ILE A 138 7.255 32.108 25.602 1.00 32.57 C </line>
<line>ATOM 933 CA ALA A 139 9.094 35.331 26.391 1.00 35.51 C </line>
<line>ATOM 938 CA SER A 140 7.375 37.584 23.793 1.00 34.27 C </line>
<line>ATOM 944 CA VAL A 141 3.615 37.851 23.871 1.00 32.46 C </line>
<line>ATOM 951 CA THR A 142 1.912 40.751 22.101 1.00 33.62 C </line>
<line>ATOM 958 CA LYS A 143 -1.437 41.359 23.850 1.00 33.44 C </line>
<line>ATOM 967 CA THR A 144 -4.181 43.390 22.169 1.00 31.31 C </line>
</atom-coordinate>
<distance-map>
<line> THR LYS THR VAL SER ALA ILE LYS SER MET THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 24.77 21.55 20.02 16.56 15.82 13.58 10.25 8.90 5.45 3.83 </line>
<line>MET CA 22.78 19.45 18.38 14.80 14.46 11.99 8.72 6.62 3.83 </line>
<line>SER CA 22.21 18.63 17.03 13.28 12.08 9.09 6.44 3.80 </line>
<line>LYS CA 19.26 15.55 13.98 10.18 8.96 5.76 3.79 </line>
<line>ILE CA 16.43 12.81 10.75 7.02 5.77 3.79 </line>
<line>ALA CA 16.09 12.40 9.97 6.54 3.84 </line>
<line>SER CA 13.03 9.59 6.54 3.77 </line>
<line>VAL CA 9.71 6.15 3.80 </line>
<line>THR CA 6.64 3.83 </line>
<line>LYS CA 3.81 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>THR CA 224</line>
<line>MET CA 260</line>
<line>SER CA 208</line>
<line>LYS CA 215</line>
<line>ILE CA 273</line>
<line>ALA CA 217</line>
<line>SER CA 229</line>
<line>VAL CA 311</line>
<line>THR CA 266</line>
<line>LYS CA 314</line>
<line>THR CA 262</line>
</n14>
</entryChain>
<parallel>
<x>4.73799991607666</x>
<y>-1.9420000314712524</y>
<z>13.54699993133545</z>
</parallel>
<rotation>
<x>-0.949999988079071</x>
<y>-0.2070000022649765</y>
<z>0.2329999953508377</z>
<x>0.16200000047683716</x>
<y>0.3089999854564667</y>
<z>0.9369999766349792</z>
<x>-0.26600000262260437</x>
<y>0.9279999732971191</y>
<z>-0.25999999046325684</z>
</rotation>
<rmsd>0.9047499895095825</rmsd>
<dmax>1.648645043373108</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2VN5</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2VN5A</entryIDChain>
<sequence>SSSAS--NGTIS</sequence>
<secondary-structure>EEEEE--EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 471 CA SER A 76 -10.878 26.143 32.332 1.00 31.84 C </line>
<line>ATOM 477 CA SER A 77 -12.137 29.620 33.025 1.00 31.70 C </line>
<line>ATOM 483 CA SER A 78 -13.768 31.625 35.778 1.00 31.98 C </line>
<line>ATOM 489 CA ALA A 79 -15.380 35.098 35.898 1.00 34.48 C </line>
<line>ATOM 494 CA SER A 80 -15.914 37.271 38.948 1.00 36.45 C </line>
<line>ATOM 500 CA ASN A 81 -16.667 40.947 39.372 1.00 36.00 C </line>
<line>ATOM 508 CA GLY A 82 -14.849 42.353 36.454 1.00 30.27 C </line>
<line>ATOM 512 CA THR A 83 -12.117 39.716 35.946 1.00 30.32 C </line>
<line>ATOM 519 CA ILE A 84 -12.153 36.681 33.669 1.00 29.97 C </line>
<line>ATOM 527 CA SER A 85 -9.481 34.008 34.274 1.00 30.67 C </line>
</atom-coordinate>
<distance-map>
<line> SER ILE THR GLY ASN SER ALA SER SER SER </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 8.22 10.70 14.10 17.19 17.38 13.89 10.64 7.09 3.76 </line>
<line>SER CA 5.28 7.09 10.51 13.46 13.75 10.39 6.98 3.78 </line>
<line>SER CA 5.13 5.71 8.26 10.80 10.40 6.82 3.83 </line>
<line>ALA CA 6.21 4.23 5.65 7.30 6.92 3.78 </line>
<line>SER CA 8.60 6.51 5.42 5.76 3.78 </line>
<line>ASN CA 11.22 8.43 5.83 3.71 </line>
<line>GLY CA 10.16 6.87 3.83 </line>
<line>THR CA 6.51 3.79 </line>
<line>ILE CA 3.83 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>SER CA 292</line>
<line>SER CA 326</line>
<line>SER CA 266</line>
<line>ALA CA 281</line>
<line>SER CA 212</line>
<line>ASN CA 203</line>
<line>GLY CA 274</line>
<line>THR CA 296</line>
<line>ILE CA 376</line>
<line>SER CA 342</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AOH</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1AOHA</entryIDChain>
<sequence>DTAVYPDRKMIV</sequence>
<secondary-structure>EEEEE EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 484 CA ASP A 70 27.331 36.447 30.910 1.00 7.86 C </line>
<line>ATOM 492 CA THR A 71 28.258 38.509 33.979 1.00 7.68 C </line>
<line>ATOM 499 CA ALA A 72 28.785 42.236 34.585 1.00 8.74 C </line>
<line>ATOM 504 CA VAL A 73 30.978 43.457 37.466 1.00 7.55 C </line>
<line>ATOM 511 CA TYR A 74 30.532 47.014 38.792 1.00 5.41 C </line>
<line>ATOM 523 CA PRO A 75 33.333 47.801 41.295 1.00 7.82 C </line>
<line>ATOM 530 CA ASP A 76 32.023 51.295 42.142 1.00 11.63 C </line>
<line>ATOM 538 CA ARG A 77 28.621 49.897 43.191 1.00 6.74 C </line>
<line>ATOM 543 CA LYS A 78 30.373 46.747 44.503 1.00 9.74 C </line>
<line>ATOM 552 CA MET A 79 28.201 44.321 42.612 1.00 11.84 C </line>
<line>ATOM 560 CA ILE A 80 28.354 41.251 40.435 1.00 7.10 C </line>
<line>ATOM 568 CA VAL A 81 25.468 40.620 38.087 1.00 5.62 C </line>
</atom-coordinate>
<distance-map>
<line> VAL ILE MET LYS ARG ASP PRO TYR VAL ALA THR ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 8.51 10.72 14.13 17.32 18.26 19.20 16.52 13.57 10.27 7.01 3.81 </line>
<line>THR CA 5.40 7.01 10.41 13.53 14.65 15.63 12.87 10.03 6.64 3.81 </line>
<line>ALA CA 5.09 5.95 8.31 11.01 11.52 12.23 9.83 6.60 3.82 </line>
<line>VAL CA 6.23 4.54 5.91 7.79 8.93 9.19 6.25 3.82 </line>
<line>TYR CA 8.19 6.38 5.22 5.72 5.60 5.64 3.84 </line>
<line>PRO CA 11.12 8.27 6.34 4.49 5.49 3.83 </line>
<line>ASP CA 13.17 10.83 7.97 5.38 3.82 </line>
<line>ARG CA 11.05 9.08 5.62 3.84 </line>
<line>LYS CA 10.14 7.13 3.77 </line>
<line>MET CA 6.45 3.77 </line>
<line>ILE CA 3.77 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>ASP CA 327</line>
<line>THR CA 337</line>
<line>ALA CA 284</line>
<line>VAL CA 298</line>
<line>TYR CA 227</line>
<line>PRO CA 218</line>
<line>ASP CA 147</line>
<line>ARG CA 178</line>
<line>LYS CA 250</line>
<line>MET CA 311</line>
<line>ILE CA 403</line>
<line>VAL CA 358</line>
</n14>
</entryChain>
<parallel>
<x>-43.0989990234375</x>
<y>-8.232000350952148</y>
<z>-2.2860000133514404</z>
</parallel>
<rotation>
<x>-0.875</x>
<y>0.06400000303983688</y>
<z>-0.4790000021457672</z>
<x>-0.4410000145435333</x>
<y>0.3019999861717224</y>
<z>0.8450000286102295</z>
<x>0.19900000095367432</x>
<y>0.9509999752044678</y>
<z>-0.2370000034570694</z>
</rotation>
<rmsd>0.90379798412323</rmsd>
<dmax>1.9495010375976562</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2VN5</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2VN5A</entryIDChain>
<sequence>LDNTI-TDELI</sequence>
<secondary-structure>EE - </secondary-structure>
<atom-coordinate>
<line>ATOM 563 CA LEU A 89 -2.955 22.894 29.713 1.00 30.29 C </line>
<line>ATOM 571 CA ASP A 90 -2.438 20.006 27.329 1.00 31.09 C </line>
<line>ATOM 579 CA ASN A 91 -2.902 17.304 29.989 1.00 31.66 C </line>
<line>ATOM 587 CA ATHR A 92 -1.438 14.735 27.507 0.50 29.29 C </line>
<line>ATOM 594 CA ILE A 93 1.660 17.036 27.496 1.00 33.09 C </line>
<line>ATOM 602 CA THR A 94 2.558 16.311 23.835 1.00 33.01 C </line>
<line>ATOM 609 CA ASP A 95 -0.567 15.201 21.980 1.00 33.25 C </line>
<line>ATOM 617 CA GLU A 96 -3.210 17.972 22.319 1.00 32.97 C </line>
<line>ATOM 626 CA LEU A 97 -1.158 21.129 21.863 1.00 31.28 C </line>
<line>ATOM 634 CA ILE A 98 -2.413 24.395 20.403 1.00 31.44 C </line>
</atom-coordinate>
<distance-map>
<line> ILE LEU GLU ASP THR ILE THR ASN ASP LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 9.45 8.24 8.89 11.17 10.41 7.78 8.59 5.60 3.78 </line>
<line>ASP CA 8.20 5.73 5.46 7.43 7.13 5.06 5.37 3.82 </line>
<line>ASN CA 11.93 9.15 7.71 8.60 8.29 5.21 3.86 </line>
<line>THR CA 12.03 8.53 6.37 5.61 5.65 3.86 </line>
<line>ILE CA 11.00 7.51 7.17 6.23 3.84 </line>
<line>THR CA 10.09 6.40 6.19 3.80 </line>
<line>ASP CA 9.51 5.96 3.84 </line>
<line>GLU CA 6.75 3.79 </line>
<line>LEU CA 3.79 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>LEU CA 346</line>
<line>ASP CA 300</line>
<line>ASN CA 221</line>
<line>THR CA 191</line>
<line>ILE CA 214</line>
<line>THR CA 204</line>
<line>ASP CA 200</line>
<line>GLU CA 265</line>
<line>LEU CA 338</line>
<line>ILE CA 405</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AOH</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1AOHA</entryIDChain>
<sequence>AEDSGTGAYAI</sequence>
<secondary-structure>EE </secondary-structure>
<atom-coordinate>
<line>ATOM 605 CA ALA A 85 19.440 32.883 29.274 1.00 7.99 C </line>
<line>ATOM 610 CA GLU A 86 19.687 29.632 27.303 1.00 6.20 C </line>
<line>ATOM 619 CA ASP A 87 20.620 30.637 23.732 1.00 8.54 C </line>
<line>ATOM 627 CA SER A 88 18.636 28.069 21.735 1.00 10.11 C </line>
<line>ATOM 633 CA GLY A 89 15.282 29.699 22.330 1.00 14.29 C </line>
<line>ATOM 637 CA THR A 90 13.634 26.262 22.531 1.00 12.21 C </line>
<line>ATOM 644 CA GLY A 91 14.824 25.328 26.015 1.00 8.33 C </line>
<line>ATOM 648 CA ALA A 92 17.615 23.129 24.591 1.00 7.58 C </line>
<line>ATOM 653 CA TYR A 93 20.479 24.742 26.574 1.00 6.91 C </line>
<line>ATOM 665 CA ALA A 94 18.567 24.900 29.856 1.00 6.99 C </line>
<line>ATOM 670 CA ILE A 95 20.526 23.881 32.974 1.00 6.86 C </line>
</atom-coordinate>
<distance-map>
<line> ILE ALA TYR ALA GLY THR GLY SER ASP GLU ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 9.79 8.05 8.64 10.97 9.43 11.09 8.70 8.98 6.10 3.81 </line>
<line>GLU CA 8.12 5.49 5.01 7.34 6.62 8.41 6.64 5.88 3.83 </line>
<line>ASP CA 11.45 8.64 6.55 8.13 8.18 8.33 5.60 3.81 </line>
<line>SER CA 12.14 8.72 6.15 5.80 6.35 5.38 3.78 </line>
<line>GLY CA 13.22 9.51 8.34 7.33 5.74 3.82 </line>
<line>THR CA 12.74 8.94 8.09 5.47 3.80 </line>
<line>GLY CA 9.11 5.38 5.71 3.83 </line>
<line>ALA CA 8.91 5.64 3.84 </line>
<line>TYR CA 6.46 3.80 </line>
<line>ALA CA 3.82 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>ALA CA 360</line>
<line>GLU CA 335</line>
<line>ASP CA 234</line>
<line>SER CA 202</line>
<line>GLY CA 189</line>
<line>THR CA 178</line>
<line>GLY CA 239</line>
<line>ALA CA 235</line>
<line>TYR CA 305</line>
<line>ALA CA 371</line>
<line>ILE CA 410</line>
</n14>
</entryChain>
<parallel>
<x>-19.483999252319336</x>
<y>-10.333000183105469</y>
<z>1.0770000219345093</z>
</parallel>
<rotation>
<x>-0.996999979019165</x>
<y>-0.0560000017285347</y>
<z>0.04899999871850014</z>
<x>0.024000000208616257</x>
<y>0.3799999952316284</y>
<z>0.925000011920929</z>
<x>-0.07000000029802322</x>
<y>0.9229999780654907</y>
<z>-0.3779999911785126</z>
</rotation>
<rmsd>0.9487199783325195</rmsd>
<dmax>1.7939200401306152</dmax>
</indel>