NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1AP2D-1QLRD
confEVID 1AP2D-1QLRD
pdbIDA 1AP2
pdbIDB 1QLR
pdbChainA D
pdbChainB D
identity 0.46340000629425
indelSize 1
alignment <alignment>
<seq1>EVQLQQSGAELVRPGASVKLSCTASGFNIKDDFMHWVKQRPEQGLEWIGRIDPANDNTKYAPKFQDKATIIADTSSNTAYLQLSSLTSEDTAVYYCARREVYSYYSPLDVWGAGTTVTVPSGS---------------------------------------------------------------------------------------</seq1>
<seq2>EVQLQQWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINH-SGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPTDEHVVCKVQHPNGNKEKNVPLPV</seq2>
<ss_1> EEE EEEEEEEE GGG EEEEEEEE EEEEEEEEE EEEEE EEEEEEE EEEEEEE HHHHEEEEEEEE EEEE ---------------------------------------------------------------------------------------</ss_1>
<ss_2> EEEEE EEEEEEEE EEEEEE EEEEEEE - EEEEE EEEEEEE EEEEEEE GGG EEEEEEE EEEE EEEEE EEEEEEEEE EEEEE EEE EEE EEEEEEEE EEEEEEE EEEEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1QLR</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1QLRD</entryIDChain>
<sequence>GEINH-SGSTN</sequence>
<secondary-structure>EEEE - EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 5275 CA GLY D 49 -36.561 98.599 105.314 1.00 22.26 C </line>
<line>ATOM 5279 CA GLU D 50 -40.208 98.821 106.390 1.00 27.08 C </line>
<line>ATOM 5288 CA ILE D 51 -43.476 100.701 105.882 1.00 27.53 C </line>
<line>ATOM 5296 CA ASN D 52 -46.970 101.088 107.421 1.00 28.57 C </line>
<line>ATOM 5304 CA HIS D 53 -50.390 101.756 105.885 1.00 32.20 C </line>
<line>ATOM 5314 CA SER D 54 -50.011 105.484 105.953 1.00 38.02 C </line>
<line>ATOM 5320 CA GLY D 55 -46.764 105.649 103.986 1.00 36.04 C </line>
<line>ATOM 5324 CA SER D 56 -44.085 106.361 106.590 1.00 35.86 C </line>
<line>ATOM 5330 CA THR D 57 -41.009 104.240 105.989 1.00 34.10 C </line>
<line>ATOM 5337 CA ASN D 58 -37.624 103.498 107.627 1.00 35.21 C </line>
</atom-coordinate>
<distance-map>
<line> ASN THR SER GLY SER HIS ASN ILE GLU GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 5.52 7.22 10.89 12.47 15.12 14.20 10.91 7.25 3.81 </line>
<line>GLU CA 5.48 5.49 8.48 9.77 11.86 10.61 7.21 3.80 </line>
<line>ILE CA 6.72 4.32 5.74 6.24 8.10 6.99 3.84 </line>
<line>ASN CA 9.65 6.89 6.07 5.71 5.54 3.81 </line>
<line>HIS CA 13.00 9.70 7.84 5.65 3.75 </line>
<line>SER CA 12.66 9.09 6.02 3.80 </line>
<line>GLY CA 10.07 6.25 3.80 </line>
<line>SER CA 7.14 3.78 </line>
<line>THR CA 3.83 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>GLY CA 397</line>
<line>GLU CA 431</line>
<line>ILE CA 384</line>
<line>ASN CA 350</line>
<line>HIS CA 287</line>
<line>SER CA 212</line>
<line>GLY CA 227</line>
<line>SER CA 223</line>
<line>THR CA 290</line>
<line>ASN CA 277</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AP2</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1AP2D</entryIDChain>
<sequence>GRIDPANDNTK</sequence>
<secondary-structure>EEEE EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 3047 CA GLY D 49 36.716 -6.311 20.075 1.00 2.00 C </line>
<line>ATOM 3051 CA ARG D 50 33.204 -5.012 20.769 1.00 2.14 C </line>
<line>ATOM 3062 CA ILE D 51 29.549 -6.042 20.932 1.00 5.01 C </line>
<line>ATOM 3070 CA ASP D 52 26.113 -4.766 19.960 1.00 9.71 C </line>
<line>ATOM 3078 CA PRO D 53 24.075 -5.381 23.127 1.00 13.63 C </line>
<line>ATOM 3085 CA ALA D 54 20.892 -5.005 21.069 1.00 14.55 C </line>
<line>ATOM 3090 CA ASN D 55 21.690 -7.928 18.769 1.00 19.64 C </line>
<line>ATOM 3098 CA ASP D 56 24.578 -9.373 20.760 1.00 16.56 C </line>
<line>ATOM 3106 CA ASN D 57 26.615 -8.996 17.585 1.00 18.81 C </line>
<line>ATOM 3114 CA THR D 58 30.312 -9.022 18.418 1.00 18.20 C </line>
<line>ATOM 3121 CA LYS D 59 33.499 -8.428 16.430 1.00 11.40 C </line>
</atom-coordinate>
<distance-map>
<line> LYS THR ASN ASP ASN ALA PRO ASP ILE ARG GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 5.30 7.15 10.74 12.54 15.17 15.91 13.04 10.72 7.22 3.81 </line>
<line>ARG CA 5.53 5.47 8.33 9.67 12.04 12.32 9.44 7.14 3.80 </line>
<line>ILE CA 6.45 3.97 5.34 5.99 8.37 8.72 5.93 3.79 </line>
<line>ASP CA 8.97 6.17 4.88 4.92 5.57 5.34 3.82 </line>
<line>PRO CA 11.96 8.62 7.09 4.67 5.58 3.81 </line>
<line>ALA CA 13.86 10.58 7.80 5.72 3.80 </line>
<line>ASN CA 12.05 8.70 5.18 3.79 </line>
<line>ASP CA 9.96 6.20 3.79 </line>
<line>ASN CA 7.00 3.79 </line>
<line>THR CA 3.80 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>GLY CA 377</line>
<line>ARG CA 427</line>
<line>ILE CA 386</line>
<line>ASP CA 328</line>
<line>PRO CA 336</line>
<line>ALA CA 239</line>
<line>ASN CA 198</line>
<line>ASP CA 260</line>
<line>ASN CA 228</line>
<line>THR CA 298</line>
<line>LYS CA 281</line>
</n14>
</entryChain>
<parallel>
<x>-72.6259994506836</x>
<y>109.03399658203125</y>
<z>85.68099975585938</z>
</parallel>
<rotation>
<x>0.9169999957084656</x>
<y>-0.38999998569488525</y>
<z>-0.08699999749660492</z>
<x>-0.23000000417232513</x>
<y>-0.6940000057220459</y>
<z>0.6830000281333923</z>
<x>-0.32600000500679016</x>
<y>-0.6060000061988831</y>
<z>-0.7260000109672546</z>
</rotation>
<rmsd>0.8128470182418823</rmsd>
<dmax>1.3800569772720337</dmax>
</indel>