NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1APNB-2GDFC
confEVID 1APNB-2GDFC
pdbIDA 1APN
pdbIDB 2GDF
pdbChainA B
pdbChainB C
identity 0.783500015735626
indelSize 1
alignment <alignment>
<seq1>ADTIVAVELDTYPN------SYPHIGIDIKSVRSKKTAKWNMQNGKVGTAHIIYNSVDKRLSAVVSYPNADSATVSYDVDLDNVLPEWVRVGLSASTGLYKETNTILSWSFTSKLKSNSTHETNALHFMFNQFSKDQKDLILQGDATTGTDGNLELTRVQGSSVGRALFYAPVHIWESSAVVASFEATFTFLIKSPDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN</seq1>
<seq2>ADTIVAVELDSYPNTDIGDPNYPHIGIDIKSIRSKSTARWNMQTGKVGTVHISYNSVAKRLSAVVSYSGSSSTTVSYDVDLNNVLPEWVRVGLSATTGLYKETNTILSWSFTSKLKTE-----NSLHFSFHKFSQNPKDLILQGDAFTDSDGNLELTKVQGNSVGRALFYAPVHIWEKSAVVASFDATFTFLIKSPDREPADGITFFIANTDTSIPSGSGGRLLGLFPDAN</seq2>
<ss_1> EEEEEEEE ------ EEEEE EEE EEEEEEEEEE EEEEEEEE EEEEEEEE EEEEEEEEE EEEEEEEEEEEEE EEEEEEEEE EEEEEEEE EEE EE EEEEEE EEEEEEEEEEEE EEEEEEEEEE GGG </ss_1>
<ss_2> EEEEEEEE EEEEE EEE EEEEEEEEEE EEEEEEEEE EEEEE EEEEEEEEE EEEEEEEEEEEEE -----EEEEEEE EEEEE EEE EEE EEEEEE EEEEEEEEEEEE EEEEEEEEEE GGG </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2GDF</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>2GDFC</entryIDChain>
<sequence>KLKTE-----NSLHF</sequence>
<secondary-structure>EEE -----EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 4407 CA LYS C 114 17.081 0.711 -19.334 1.00 30.16 C </line>
<line>ATOM 4416 CA LEU C 115 13.803 0.520 -21.148 1.00 31.62 C </line>
<line>ATOM 4424 CA LYS C 116 10.847 2.442 -19.681 1.00 32.74 C </line>
<line>ATOM 4433 CA THR C 117 7.176 2.674 -20.518 1.00 34.25 C </line>
<line>ATOM 4440 CA GLU C 123 9.707 -2.351 -17.563 1.00 41.06 C </line>
<line>ATOM 4449 CA ASN C 124 13.260 -3.610 -18.354 1.00 37.62 C </line>
<line>ATOM 4457 CA SER C 125 16.694 -3.294 -16.828 1.00 33.89 C </line>
<line>ATOM 4463 CA LEU C 126 20.026 -5.037 -17.561 1.00 30.32 C </line>
<line>ATOM 4471 CA HIS C 127 23.459 -4.480 -15.963 1.00 28.16 C </line>
<line>ATOM 4481 CA PHE C 128 26.724 -6.371 -16.003 1.00 27.42 C </line>
</atom-coordinate>
<distance-map>
<line> PHE HIS LEU SER ASN GLU THR LYS LEU LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 12.42 8.89 6.70 4.74 5.85 8.18 10.17 6.48 3.75 </line>
<line>LEU CA 15.52 12.05 9.08 6.45 5.02 6.15 7.00 3.82 </line>
<line>LYS CA 18.53 14.86 12.03 8.67 6.65 5.36 3.77 </line>
<line>THR CA 22.01 18.36 15.28 11.82 9.01 6.36 </line>
<line>GLU CA 17.55 14.01 10.66 7.09 3.85 </line>
<line>ASN CA 13.94 10.51 6.96 3.77 </line>
<line>SER CA 10.52 6.92 3.83 </line>
<line>LEU CA 7.01 3.83 </line>
<line>HIS CA 3.77 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>LYS CA 333</line>
<line>LEU CA 301</line>
<line>LYS CA 225</line>
<line>THR CA 170</line>
<line>GLU CA 180</line>
<line>ASN CA 243</line>
<line>SER CA 250</line>
<line>LEU CA 297</line>
<line>HIS CA 282</line>
<line>PHE CA 304</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1APN</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1APNB</entryIDChain>
<sequence>KLKSNSTHETNALHF</sequence>
<secondary-structure>EEE EEEEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 2534 CA LYS B 114 7.555 -7.316 28.147 1.00 12.78 C </line>
<line>ATOM 2543 CA LEU B 115 8.764 -8.472 31.589 1.00 20.07 C </line>
<line>ATOM 2551 CA LYS B 116 5.842 -8.959 34.022 1.00 30.81 C </line>
<line>ATOM 2560 CA SER B 117 6.647 -9.316 37.619 1.00 50.05 C </line>
<line>ATOM 2566 CA ASN B 118 5.001 -11.165 40.401 1.00 71.13 C </line>
<line>ATOM 2571 CA SER B 119 4.005 -7.789 41.633 1.00 97.85 C </line>
<line>ATOM 2577 CA THR B 120 0.658 -6.339 40.838 1.00114.20 C </line>
<line>ATOM 2584 CA HIS B 121 0.915 -4.111 37.695 1.00104.13 C </line>
<line>ATOM 2594 CA GLU B 122 4.742 -4.359 37.627 1.00 73.56 C </line>
<line>ATOM 2599 CA THR B 123 5.284 -4.621 33.873 1.00 43.84 C </line>
<line>ATOM 2606 CA ASN B 124 8.443 -3.306 32.196 1.00 23.44 C </line>
<line>ATOM 2614 CA ALA B 125 8.023 -2.881 28.350 1.00 14.40 C </line>
<line>ATOM 2619 CA LEU B 126 10.071 -1.850 25.287 1.00 12.82 C </line>
<line>ATOM 2627 CA HIS B 127 8.484 -1.254 21.949 1.00 14.35 C </line>
<line>ATOM 2637 CA PHE B 128 9.701 0.185 18.696 1.00 15.62 C </line>
</atom-coordinate>
<distance-map>
<line> PHE HIS LEU ALA ASN THR GLU HIS THR SER ASN SER LYS LEU LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 12.26 8.72 6.66 4.46 5.77 6.72 10.32 12.06 14.48 13.95 13.10 9.72 6.34 3.83 </line>
<line>LEU CA 15.56 12.05 9.23 6.50 5.21 5.67 8.34 10.86 12.48 11.14 9.95 6.45 3.83 </line>
<line>LYS CA 18.26 14.56 12.03 8.59 6.49 4.38 5.95 7.83 8.96 7.92 6.80 3.70 </line>
<line>SER CA 21.39 17.72 14.82 11.37 8.29 6.16 5.31 7.74 7.42 5.04 3.72 </line>
<line>ASN CA 24.94 21.23 18.46 14.93 11.87 9.25 7.35 8.59 6.51 3.73 </line>
<line>SER CA 24.94 21.22 18.42 14.72 11.35 8.48 5.33 6.21 3.73 </line>
<line>THR CA 24.79 21.07 18.72 14.90 12.02 8.54 5.56 3.86 </line>
<line>HIS CA 21.37 17.70 15.59 11.81 9.36 5.83 3.84 </line>
<line>GLU CA 20.09 16.41 13.67 9.95 6.66 3.80 </line>
<line>THR CA 16.52 12.80 10.21 6.41 3.81 </line>
<line>ASN CA 14.00 10.45 7.25 3.89 </line>
<line>ALA CA 10.27 6.62 3.83 </line>
<line>LEU CA 6.91 3.74 </line>
<line>HIS CA 3.76 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>LYS CA 338</line>
<line>LEU CA 314</line>
<line>LYS CA 230</line>
<line>SER CA 186</line>
<line>ASN CA 138</line>
<line>SER CA 114</line>
<line>THR CA 95</line>
<line>HIS CA 113</line>
<line>GLU CA 141</line>
<line>THR CA 187</line>
<line>ASN CA 238</line>
<line>ALA CA 257</line>
<line>LEU CA 298</line>
<line>HIS CA 285</line>
<line>PHE CA 293</line>
</n14>
</entryChain>
<parallel>
<x>6.031000137329102</x>
<y>5.664999961853027</y>
<z>-51.07500076293945</z>
</parallel>
<rotation>
<x>0.15600000321865082</x>
<y>-0.5080000162124634</y>
<z>-0.847000002861023</z>
<x>0.164000004529953</x>
<y>-0.8330000042915344</y>
<z>0.5289999842643738</z>
<x>-0.9739999771118164</x>
<y>-0.22200000286102295</y>
<z>-0.04699999839067459</z>
</rotation>
<rmsd>2.8925230503082275</rmsd>
<dmax>7.233847141265869</dmax>
</indel>