NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1APXA-1CPDA
confEVID 1APXA-1CPDA
pdbIDA 1APX
pdbIDB 1CPD
pdbChainA A
pdbChainB A
identity 0.317499995231628
indelSize 3
alignment <alignment>
<seq1>----GKSYPTVSPDYQKAIEKAKRKLRGFIAEKK-------CAPLILRLAWHSAGTFDSKTKTGGPF-GTIKHQAELAHGANNGLDIAVRLLEPIKEQFPIVSYADFYQLAGVVAVEITGGPEVPFHPGREDKP--EPPPEGRLPDATKGSDHLRDVFGKAMGLSDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLIFDNSYFTELLTGEKD---------------GLLQLPSDKALLTDSVFRPLVEKYAADEDVFFADYAEAHLKLSELGFAEA-----------------</seq1>
<seq2>LVHVASVEKGRSYEDFQ---KVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ-RLNMNDREVVALMGAHALGKTHLKNSGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTLEEQGL</seq2>
<ss_1>---- HHHHHHHHHHHHHHHHHHHH ------- HHHHHHHHHHHGGG - GGG HHHH GGG HHHHHHHHHHGGG HHHHHHHHHHHHHHH -- HHHHIIIIIII HHHHHHHGGGGG EEE HHHHHHH --------------- HHHH HHHHHHHHH HHHHHHHHHHHHHHHH -----------------</ss_1>
<ss_2> HHHHH---HHHHHHHHHHHH HHHHHHHHHHHH GGG HHHH HHHHHHHHHHH HHHHHHHHHHHHHHH HHHHHHHH - HHHHHHGGGGGG EEE HHHH HHHHHHHH EEEEEEE EEEEEE EEE GGG HHHHHHHHHHHH HHHHHHHHHHHHHHHHH HHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1APX</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1APXA</entryIDChain>
<sequence>REDKP--EPPPE</sequence>
<secondary-structure> -- </secondary-structure>
<atom-coordinate>
<line>ATOM 899 CA ARG A 119 29.975 -1.578 21.450 1.00 10.09 C </line>
<line>ATOM 910 CA GLU A 120 30.770 1.822 22.846 1.00 15.56 C </line>
<line>ATOM 919 CA ASP A 121 29.049 5.090 21.968 1.00 11.52 C </line>
<line>ATOM 927 CA LYS A 122 31.384 7.434 20.141 1.00 12.38 C </line>
<line>ATOM 936 CA PRO A 123 30.942 11.241 20.498 1.00 16.71 C </line>
<line>ATOM 943 CA GLU A 124 31.362 12.434 16.906 1.00 21.80 C </line>
<line>ATOM 952 CA PRO A 125 29.340 11.330 13.864 1.00 15.36 C </line>
<line>ATOM 959 CA PRO A 126 31.091 10.310 10.635 1.00 13.11 C </line>
<line>ATOM 966 CA PRO A 127 31.020 12.667 7.611 1.00 10.62 C </line>
<line>ATOM 973 CA GLU A 128 28.239 12.485 5.006 1.00 11.07 C </line>
</atom-coordinate>
<distance-map>
<line> GLU PRO PRO PRO GLU PRO LYS ASP GLU ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 21.71 19.89 16.11 14.99 14.80 12.89 9.21 6.75 3.76 </line>
<line>GLU CA 20.94 18.70 14.87 13.16 12.18 9.71 6.26 3.80 </line>
<line>ASP CA 18.52 16.35 12.64 10.23 9.21 6.60 3.78 </line>
<line>LYS CA 16.26 13.58 9.94 7.67 5.96 3.85 </line>
<line>PRO CA 15.78 12.97 9.91 6.83 3.81 </line>
<line>GLU CA 12.30 9.30 6.63 3.82 </line>
<line>PRO CA 9.00 6.61 3.81 </line>
<line>PRO CA 6.67 3.83 </line>
<line>PRO CA 3.81 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>ARG CA 397</line>
<line>GLU CA 334</line>
<line>ASP CA 320</line>
<line>LYS CA 280</line>
<line>PRO CA 201</line>
<line>GLU CA 226</line>
<line>PRO CA 306</line>
<line>PRO CA 323</line>
<line>PRO CA 267</line>
<line>GLU CA 263</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1CPD</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CPDA</entryIDChain>
<sequence>RVDTPEDTTPDN</sequence>
<secondary-structure> </secondary-structure>
<atom-coordinate>
<line>ATOM 1001 CA ARG A 130 15.785 65.343 17.220 1.00 11.56 C </line>
<line>ATOM 1012 CA VAL A 131 18.107 65.917 20.160 1.00 15.93 C </line>
<line>ATOM 1019 CA ASP A 132 17.861 64.684 23.607 1.00 21.00 C </line>
<line>ATOM 1027 CA THR A 133 17.220 67.391 26.102 1.00 28.17 C </line>
<line>ATOM 1034 CA PRO A 134 17.509 67.437 29.822 1.00 31.51 C </line>
<line>ATOM 1041 CA GLU A 135 15.261 66.138 32.414 1.00 39.56 C </line>
<line>ATOM 1050 CA ASP A 136 14.094 69.629 33.083 1.00 56.63 C </line>
<line>ATOM 1058 CA THR A 137 12.657 70.148 29.661 1.00 34.91 C </line>
<line>ATOM 1065 CA THR A 138 10.126 67.494 30.546 1.00 32.63 C </line>
<line>ATOM 1072 CA PRO A 139 6.521 68.725 30.200 1.00 34.67 C </line>
<line>ATOM 1079 CA ASP A 140 4.150 68.315 33.081 1.00 37.90 C </line>
<line>ATOM 1087 CA ASN A 141 1.391 65.757 32.842 1.00 34.89 C </line>
</atom-coordinate>
<distance-map>
<line> ASN ASP PRO THR THR ASP GLU PRO THR ASP VAL ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 21.25 19.89 16.30 14.64 13.70 16.52 15.22 12.89 9.23 6.75 3.79 </line>
<line>VAL CA 20.98 19.17 15.59 13.19 11.74 14.03 12.58 9.80 6.19 3.67 </line>
<line>ASP CA 18.91 17.06 13.73 10.76 9.67 11.33 9.30 6.81 3.74 </line>
<line>THR CA 17.28 14.85 11.53 8.37 6.41 7.97 6.73 3.73 </line>
<line>PRO CA 16.48 13.78 11.07 7.42 5.56 5.21 3.67 </line>
<line>GLU CA 13.88 11.34 9.38 5.63 5.52 3.74 </line>
<line>ASP CA 13.28 10.03 8.15 5.17 3.75 </line>
<line>THR CA 12.50 9.35 6.32 3.77 </line>
<line>THR CA 9.20 6.54 3.83 </line>
<line>PRO CA 6.49 3.75 </line>
<line>ASP CA 3.77 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>ARG CA 452</line>
<line>VAL CA 383</line>
<line>ASP CA 338</line>
<line>THR CA 293</line>
<line>PRO CA 213</line>
<line>GLU CA 219</line>
<line>ASP CA 195</line>
<line>THR CA 287</line>
<line>THR CA 335</line>
<line>PRO CA 350</line>
<line>ASP CA 279</line>
<line>ASN CA 282</line>
</n14>
</entryChain>
<parallel>
<x>16.016000747680664</x>
<y>-59.88199996948242</y>
<z>-7.375999927520752</z>
</parallel>
<rotation>
<x>0.09399999678134918</x>
<y>0.11900000274181366</y>
<z>0.9879999756813049</z>
<x>0.9789999723434448</x>
<y>0.1720000058412552</y>
<z>-0.11299999803304672</z>
<x>-0.18400000035762787</x>
<y>0.9779999852180481</y>
<z>-0.10000000149011612</z>
</rotation>
<rmsd>0.9821479916572571</rmsd>
<dmax>1.923387050628662</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1CPD</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CPDA</entryIDChain>
<sequence>YEDFQ---KVYNA</sequence>
<secondary-structure>HHHHH---HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 90 CA TYR A 16 19.963 57.388 5.081 1.00 24.45 C </line>
<line>ATOM 102 CA GLU A 17 21.360 53.914 5.104 1.00 29.92 C </line>
<line>ATOM 111 CA ASP A 18 21.998 54.244 8.796 1.00 23.46 C </line>
<line>ATOM 119 CA PHE A 19 18.354 55.023 9.441 1.00 19.96 C </line>
<line>ATOM 130 CA GLN A 20 17.163 52.348 7.077 1.00 17.66 C </line>
<line>ATOM 139 CA LYS A 21 18.910 49.901 9.327 1.00 23.05 C </line>
<line>ATOM 148 CA VAL A 22 17.289 51.109 12.448 1.00 13.78 C </line>
<line>ATOM 155 CA TYR A 23 13.951 50.800 10.615 1.00 16.65 C </line>
<line>ATOM 167 CA ASN A 24 14.752 47.289 9.443 1.00 15.68 C </line>
<line>ATOM 175 CA ALA A 25 15.590 46.259 13.029 1.00 14.50 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ASN TYR VAL LYS GLN PHE ASP GLU TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 14.36 12.17 10.50 10.04 8.67 6.10 5.21 5.28 3.74 </line>
<line>GLU CA 12.44 10.31 9.74 8.85 6.32 4.89 5.39 3.76 </line>
<line>ASP CA 11.08 10.06 8.94 6.73 5.36 5.47 3.78 </line>
<line>PHE CA 9.87 8.53 6.21 5.05 5.15 3.76 </line>
<line>GLN CA 8.66 6.08 5.02 5.51 3.76 </line>
<line>LYS CA 6.16 4.91 5.20 3.72 </line>
<line>VAL CA 5.17 5.48 3.82 </line>
<line>TYR CA 5.40 3.79 </line>
<line>ASN CA 3.82 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>TYR CA 301</line>
<line>GLU CA 275</line>
<line>ASP CA 318</line>
<line>PHE CA 430</line>
<line>GLN CA 401</line>
<line>LYS CA 382</line>
<line>VAL CA 443</line>
<line>TYR CA 518</line>
<line>ASN CA 397</line>
<line>ALA CA 397</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1APX</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1APXA</entryIDChain>
<sequence>PDYQKAIEKAKRK</sequence>
<secondary-structure>HHHHHHHHHHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 60 CA PRO A 10 26.193 -9.863 34.407 1.00 10.06 C </line>
<line>ATOM 67 CA ASP A 11 23.987 -6.792 34.700 1.00 9.81 C </line>
<line>ATOM 75 CA TYR A 12 24.796 -5.634 31.171 1.00 9.83 C </line>
<line>ATOM 87 CA GLN A 13 23.999 -9.125 29.875 1.00 7.90 C </line>
<line>ATOM 96 CA LYS A 14 20.663 -9.231 31.708 1.00 10.51 C </line>
<line>ATOM 105 CA ALA A 15 19.905 -5.726 30.407 1.00 8.74 C </line>
<line>ATOM 110 CA ILE A 16 20.395 -7.007 26.845 1.00 7.94 C </line>
<line>ATOM 118 CA GLU A 17 18.200 -10.067 27.393 1.00 5.21 C </line>
<line>ATOM 127 CA LYS A 18 15.426 -7.876 28.787 1.00 9.99 C </line>
<line>ATOM 136 CA ALA A 19 15.681 -5.197 26.041 1.00 7.07 C </line>
<line>ATOM 141 CA LYS A 20 15.441 -7.873 23.358 1.00 2.69 C </line>
<line>ATOM 150 CA ARG A 21 12.106 -9.096 24.741 1.00 7.56 C </line>
<line>ATOM 161 CA LYS A 22 10.794 -5.527 25.107 1.00 4.60 C </line>
</atom-coordinate>
<distance-map>
<line> LYS ARG LYS ALA LYS GLU ILE ALA LYS GLN TYR ASP PRO </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>PRO CA 18.50 17.10 15.54 14.22 12.31 10.64 9.95 8.52 6.19 5.09 5.51 3.79 </line>
<line>ASP CA 16.36 15.67 14.24 12.10 10.46 9.88 8.64 6.02 5.09 5.36 3.80 </line>
<line>TYR CA 15.26 14.64 12.39 10.47 9.93 8.80 6.32 4.95 5.51 3.81 </line>
<line>GLN CA 14.49 12.95 10.83 9.97 8.73 6.38 5.16 5.35 3.81 </line>
<line>LYS CA 12.44 11.04 9.94 8.56 6.15 5.04 5.35 3.81 </line>
<line>ALA CA 10.54 10.21 8.62 6.10 5.23 5.55 3.82 </line>
<line>ILE CA 9.87 8.80 6.12 5.11 5.41 3.81 </line>
<line>GLU CA 8.98 6.72 5.36 5.65 3.80 </line>
<line>LYS CA 6.37 5.37 5.43 3.84 </line>
<line>ALA CA 4.99 5.45 3.80 </line>
<line>LYS CA 5.49 3.81 </line>
<line>ARG CA 3.82 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>PRO CA 144</line>
<line>ASP CA 170</line>
<line>TYR CA 261</line>
<line>GLN CA 253</line>
<line>LYS CA 224</line>
<line>ALA CA 285</line>
<line>ILE CA 362</line>
<line>GLU CA 302</line>
<line>LYS CA 280</line>
<line>ALA CA 371</line>
<line>LYS CA 382</line>
<line>ARG CA 277</line>
<line>LYS CA 308</line>
</n14>
</entryChain>
<parallel>
<x>-2.1500000953674316</x>
<y>60.790000915527344</y>
<z>-21.520000457763672</z>
</parallel>
<rotation>
<x>0.3269999921321869</x>
<y>0.9449999928474426</y>
<z>-0.017000000923871994</z>
<x>0.7730000019073486</x>
<y>-0.25699999928474426</y>
<z>0.5799999833106995</z>
<x>0.5440000295639038</x>
<y>-0.20200000703334808</y>
<z>-0.8149999976158142</z>
</rotation>
<rmsd>2.517263889312744</rmsd>
<dmax>3.6370840072631836</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1CPD</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CPDA</entryIDChain>
<sequence>RTFFQ-RLNMN</sequence>
<secondary-structure>HHHH - </secondary-structure>
<atom-coordinate>
<line>ATOM 1191 CA ARG A 155 -11.500 70.836 18.181 1.00 21.05 C </line>
<line>ATOM 1202 CA THR A 156 -10.109 73.083 20.878 1.00 21.67 C </line>
<line>ATOM 1209 CA PHE A 157 -7.506 70.592 22.034 1.00 23.55 C </line>
<line>ATOM 1220 CA PHE A 158 -6.078 69.939 18.549 1.00 20.51 C </line>
<line>ATOM 1231 CA GLN A 159 -5.810 73.512 17.922 1.00 27.02 C </line>
<line>ATOM 1240 CA ARG A 160 -3.080 73.680 20.489 1.00 16.38 C </line>
<line>ATOM 1251 CA LEU A 161 -1.160 71.552 18.082 1.00 18.36 C </line>
<line>ATOM 1259 CA ASN A 162 -2.074 73.496 15.074 1.00 20.64 C </line>
<line>ATOM 1267 CA MET A 163 -4.159 70.829 13.567 1.00 14.80 C </line>
<line>ATOM 1275 CA ASN A 164 -7.284 71.705 11.571 1.00 16.96 C </line>
</atom-coordinate>
<distance-map>
<line> ASN MET ASN LEU ARG GLN PHE PHE THR ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 7.89 8.67 10.28 10.37 9.18 6.29 5.51 5.55 3.78 </line>
<line>THR CA 9.82 9.69 9.92 9.50 7.07 5.23 5.62 3.78 </line>
<line>PHE CA 10.52 9.11 9.29 7.54 5.61 5.32 3.82 </line>
<line>PHE CA 7.30 5.41 6.38 5.20 5.17 3.64 </line>
<line>GLN CA 6.77 5.37 4.70 5.05 3.75 </line>
<line>ARG CA 10.06 7.56 5.51 3.74 </line>
<line>LEU CA 8.94 5.47 3.70 </line>
<line>ASN CA 6.53 3.71 </line>
<line>MET CA 3.81 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>ARG CA 333</line>
<line>THR CA 280</line>
<line>PHE CA 349</line>
<line>PHE CA 395</line>
<line>GLN CA 308</line>
<line>ARG CA 318</line>
<line>LEU CA 381</line>
<line>ASN CA 322</line>
<line>MET CA 367</line>
<line>ASN CA 315</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1APX</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1APXA</entryIDChain>
<sequence>RDVFGKAMGLS</sequence>
<secondary-structure>IIIIIII </secondary-structure>
<atom-coordinate>
<line>ATOM 1077 CA ARG A 142 31.674 -2.552 -4.696 1.00 9.93 C </line>
<line>ATOM 1088 CA ASP A 143 33.225 0.750 -3.626 1.00 12.62 C </line>
<line>ATOM 1096 CA VAL A 144 30.832 1.232 -0.705 1.00 8.90 C </line>
<line>ATOM 1103 CA PHE A 145 30.285 -2.330 0.551 1.00 4.68 C </line>
<line>ATOM 1114 CA GLY A 146 33.603 -3.690 -0.715 1.00 3.72 C </line>
<line>ATOM 1118 CA LYS A 147 36.292 -1.013 -0.531 1.00 13.66 C </line>
<line>ATOM 1127 CA ALA A 148 34.950 1.005 2.420 1.00 7.96 C </line>
<line>ATOM 1132 CA MET A 149 33.089 -1.587 4.511 1.00 5.37 C </line>
<line>ATOM 1140 CA GLY A 150 35.152 -4.644 3.603 1.00 2.00 C </line>
<line>ATOM 1144 CA LEU A 151 32.194 -6.892 2.751 1.00 6.11 C </line>
<line>ATOM 1152 CA SER A 152 32.081 -9.569 0.037 1.00 7.28 C </line>
</atom-coordinate>
<distance-map>
<line> SER LEU GLY MET ALA LYS GLY PHE VAL ASP ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 8.47 8.64 9.24 9.36 8.60 6.41 4.57 5.43 5.56 3.80 </line>
<line>ASP CA 11.01 10.01 9.22 8.47 6.29 4.70 5.32 5.96 3.81 </line>
<line>VAL CA 10.90 8.93 8.47 6.34 5.17 5.91 5.65 3.82 </line>
<line>PHE CA 7.48 5.41 6.19 4.91 6.03 6.24 3.80 </line>
<line>GLY CA 6.12 4.92 4.69 5.66 5.80 3.80 </line>
<line>LYS CA 9.55 7.88 5.62 6.00 3.82 </line>
<line>ALA CA 11.21 8.37 5.78 3.81 </line>
<line>MET CA 9.21 5.66 3.80 </line>
<line>GLY CA 6.81 3.81 </line>
<line>LEU CA 3.81 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>ARG CA 315</line>
<line>ASP CA 275</line>
<line>VAL CA 362</line>
<line>PHE CA 404</line>
<line>GLY CA 311</line>
<line>LYS CA 256</line>
<line>ALA CA 309</line>
<line>MET CA 378</line>
<line>GLY CA 330</line>
<line>LEU CA 358</line>
<line>SER CA 298</line>
</n14>
</entryChain>
<parallel>
<x>-38.76599884033203</x>
<y>73.56300354003906</y>
<z>18.732999801635742</z>
</parallel>
<rotation>
<x>0.14900000393390656</x>
<y>0.984000027179718</y>
<z>-0.09600000083446503</z>
<x>0.050999999046325684</x>
<y>0.09000000357627869</y>
<z>0.9950000047683716</z>
<x>0.9879999756813049</x>
<y>-0.15299999713897705</y>
<z>-0.03700000047683716</z>
</rotation>
<rmsd>0.8926839828491211</rmsd>
<dmax>1.763113021850586</dmax>
</indel>