NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1APXA-5CCPA
confEVID 1APXA-5CCPA
pdbIDA 1APX
pdbIDB 5CCP
pdbChainA A
pdbChainB A
identity 0.317499995231628
indelSize 3
alignment <alignment>
<seq1>----GKSYPTVSPDYQKAIEKAKRKLRGFIAEKK-------CAPLILRLAWHSAGTFDSKTKTGGPF-GTIKHQAELAHGANNGLDIAVRLLEPIKEQFPIVSYADFYQLAGVVAVEITGGPEVPFHPGREDKP--EPPPEGRLPDATKGSDHLRDVFGKAMGLSDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLIFDNSYFTELLTGEKD---------------GLLQLPSDKALLTDSVFRPLVEKYAADEDVFFADYAEAHLKLSELGFAEA-----------------</seq1>
<seq2>LVHVASVEKGRSYEDFQ---KVYNAIALKLREDDEYDNYIGYGPVLVRLAWLISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ-RLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTLEEQGL</seq2>
<ss_1>---- HHHHHHHHHHHHHHHHHHHH ------- HHHHHHHHHHHGGG - GGG HHHH GGG HHHHHHHHHHGGG HHHHHHHHHHHHHHH -- HHHHIIIIIII HHHHHHHGGGGG EEE HHHHHHH --------------- HHHH HHHHHHHHH HHHHHHHHHHHHHHHH -----------------</ss_1>
<ss_2> HHHHH---HHHHHHHHHHHH HHHHHHHHHHHH GGG HHHH HHHHHHHHHHH HHHHHHHHHHHHHHH HHHHHHHH - HHHHHHGGGGGG EEE HHHH HHHHHHHH EEEEEEE EEEEEE EEE HHHHHHHH HHHHHHHHHHHH HHHHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1APX</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1APXA</entryIDChain>
<sequence>REDKP--EPPPE</sequence>
<secondary-structure> -- </secondary-structure>
<atom-coordinate>
<line>ATOM 899 CA ARG A 119 29.975 -1.578 21.450 1.00 10.09 C </line>
<line>ATOM 910 CA GLU A 120 30.770 1.822 22.846 1.00 15.56 C </line>
<line>ATOM 919 CA ASP A 121 29.049 5.090 21.968 1.00 11.52 C </line>
<line>ATOM 927 CA LYS A 122 31.384 7.434 20.141 1.00 12.38 C </line>
<line>ATOM 936 CA PRO A 123 30.942 11.241 20.498 1.00 16.71 C </line>
<line>ATOM 943 CA GLU A 124 31.362 12.434 16.906 1.00 21.80 C </line>
<line>ATOM 952 CA PRO A 125 29.340 11.330 13.864 1.00 15.36 C </line>
<line>ATOM 959 CA PRO A 126 31.091 10.310 10.635 1.00 13.11 C </line>
<line>ATOM 966 CA PRO A 127 31.020 12.667 7.611 1.00 10.62 C </line>
<line>ATOM 973 CA GLU A 128 28.239 12.485 5.006 1.00 11.07 C </line>
</atom-coordinate>
<distance-map>
<line> GLU PRO PRO PRO GLU PRO LYS ASP GLU ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 21.71 19.89 16.11 14.99 14.80 12.89 9.21 6.75 3.76 </line>
<line>GLU CA 20.94 18.70 14.87 13.16 12.18 9.71 6.26 3.80 </line>
<line>ASP CA 18.52 16.35 12.64 10.23 9.21 6.60 3.78 </line>
<line>LYS CA 16.26 13.58 9.94 7.67 5.96 3.85 </line>
<line>PRO CA 15.78 12.97 9.91 6.83 3.81 </line>
<line>GLU CA 12.30 9.30 6.63 3.82 </line>
<line>PRO CA 9.00 6.61 3.81 </line>
<line>PRO CA 6.67 3.83 </line>
<line>PRO CA 3.81 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>ARG CA 397</line>
<line>GLU CA 334</line>
<line>ASP CA 320</line>
<line>LYS CA 280</line>
<line>PRO CA 201</line>
<line>GLU CA 226</line>
<line>PRO CA 306</line>
<line>PRO CA 323</line>
<line>PRO CA 267</line>
<line>GLU CA 263</line>
</n14>
</entryChain>
<entryChain>
<pdbID>5CCP</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>5CCPA</entryIDChain>
<sequence>RVDTPEDTTPDN</sequence>
<secondary-structure> </secondary-structure>
<atom-coordinate>
<line>ATOM 996 CA ARG A 130 15.736 65.192 17.347 1.00 14.87 C </line>
<line>ATOM 1007 CA VAL A 131 17.996 65.902 20.250 1.00 18.69 C </line>
<line>ATOM 1014 CA ASP A 132 17.869 64.587 23.695 1.00 26.05 C </line>
<line>ATOM 1022 CA THR A 133 17.225 67.373 26.157 1.00 34.05 C </line>
<line>ATOM 1029 CA PRO A 134 17.506 67.590 29.869 1.00 35.45 C </line>
<line>ATOM 1036 CA GLU A 135 15.125 66.136 32.339 1.00 45.64 C </line>
<line>ATOM 1045 CA ASP A 136 14.070 69.615 33.264 1.00 34.30 C </line>
<line>ATOM 1053 CA THR A 137 12.574 70.161 29.805 1.00 31.77 C </line>
<line>ATOM 1060 CA THR A 138 10.163 67.368 30.556 1.00 49.24 C </line>
<line>ATOM 1067 CA PRO A 139 6.584 68.678 30.190 1.00 33.77 C </line>
<line>ATOM 1074 CA ASP A 140 4.240 68.469 33.134 1.00 34.98 C </line>
<line>ATOM 1082 CA ASN A 141 1.479 65.862 32.978 1.00 41.02 C </line>
</atom-coordinate>
<distance-map>
<line> ASN ASP PRO THR THR ASP GLU PRO THR ASP VAL ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 21.17 19.80 16.15 14.50 13.78 16.60 15.03 12.87 9.20 6.72 3.75 </line>
<line>VAL CA 20.85 19.02 15.39 13.03 11.78 14.09 12.43 9.78 6.14 3.69 </line>
<line>ASP CA 18.88 17.03 13.65 10.69 9.82 11.46 9.20 6.88 3.77 </line>
<line>THR CA 17.23 14.78 11.45 8.32 6.54 8.09 6.65 3.73 </line>
<line>PRO CA 16.42 13.69 10.98 7.38 5.56 5.24 3.73 </line>
<line>GLU CA 13.66 11.16 9.17 5.41 5.40 3.75 </line>
<line>ASP CA 13.14 9.90 8.15 5.26 3.81 </line>
<line>THR CA 12.31 9.13 6.18 3.77 </line>
<line>THR CA 9.14 6.55 3.83 </line>
<line>PRO CA 6.46 3.77 </line>
<line>ASP CA 3.80 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>ARG CA 454</line>
<line>VAL CA 385</line>
<line>ASP CA 341</line>
<line>THR CA 293</line>
<line>PRO CA 211</line>
<line>GLU CA 222</line>
<line>ASP CA 191</line>
<line>THR CA 285</line>
<line>THR CA 336</line>
<line>PRO CA 351</line>
<line>ASP CA 279</line>
<line>ASN CA 280</line>
</n14>
</entryChain>
<parallel>
<x>16.031999588012695</x>
<y>-59.84600067138672</y>
<z>-7.445000171661377</z>
</parallel>
<rotation>
<x>0.07900000363588333</x>
<y>0.12099999934434891</y>
<z>0.9900000095367432</z>
<x>0.9769999980926514</x>
<y>0.1889999955892563</y>
<z>-0.10100000351667404</z>
<x>-0.19900000095367432</x>
<y>0.9750000238418579</y>
<z>-0.10300000011920929</z>
</rotation>
<rmsd>0.9585630297660828</rmsd>
<dmax>1.8774629831314087</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>5CCP</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>5CCPA</entryIDChain>
<sequence>YEDFQ---KVYNA</sequence>
<secondary-structure>HHHHH---HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 90 CA TYR A 16 19.930 57.324 5.313 1.00 20.83 C </line>
<line>ATOM 102 CA GLU A 17 21.361 53.816 5.254 1.00 20.36 C </line>
<line>ATOM 111 CA ASP A 18 22.042 54.162 8.915 1.00 14.53 C </line>
<line>ATOM 119 CA PHE A 19 18.360 54.998 9.616 1.00 25.65 C </line>
<line>ATOM 130 CA GLN A 20 17.175 52.234 7.267 1.00 16.76 C </line>
<line>ATOM 139 CA LYS A 21 18.980 49.790 9.468 1.00 21.08 C </line>
<line>ATOM 146 CA VAL A 22 17.305 51.077 12.617 1.00 8.32 C </line>
<line>ATOM 153 CA TYR A 23 13.896 50.749 10.759 1.00 13.31 C </line>
<line>ATOM 165 CA ASN A 24 14.677 47.231 9.542 1.00 23.86 C </line>
<line>ATOM 173 CA ALA A 25 15.519 46.218 13.101 1.00 18.63 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ASN TYR VAL LYS GLN PHE ASP GLU TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 14.26 12.14 10.45 9.96 8.66 6.11 5.14 5.24 3.79 </line>
<line>GLU CA 12.39 10.32 9.77 8.84 6.30 4.91 5.42 3.74 </line>
<line>ASP CA 11.10 10.13 9.02 6.76 5.37 5.49 3.84 </line>
<line>PHE CA 9.86 8.60 6.27 5.05 5.25 3.82 </line>
<line>GLN CA 8.54 6.04 5.02 5.48 3.75 </line>
<line>LYS CA 6.16 5.01 5.33 3.79 </line>
<line>VAL CA 5.20 5.58 3.90 </line>
<line>TYR CA 5.35 3.80 </line>
<line>ASN CA 3.79 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>TYR CA 298</line>
<line>GLU CA 274</line>
<line>ASP CA 316</line>
<line>PHE CA 427</line>
<line>GLN CA 400</line>
<line>LYS CA 375</line>
<line>VAL CA 441</line>
<line>TYR CA 513</line>
<line>ASN CA 396</line>
<line>ALA CA 396</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1APX</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1APXA</entryIDChain>
<sequence>PDYQKAIEKAKRK</sequence>
<secondary-structure>HHHHHHHHHHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 60 CA PRO A 10 26.193 -9.863 34.407 1.00 10.06 C </line>
<line>ATOM 67 CA ASP A 11 23.987 -6.792 34.700 1.00 9.81 C </line>
<line>ATOM 75 CA TYR A 12 24.796 -5.634 31.171 1.00 9.83 C </line>
<line>ATOM 87 CA GLN A 13 23.999 -9.125 29.875 1.00 7.90 C </line>
<line>ATOM 96 CA LYS A 14 20.663 -9.231 31.708 1.00 10.51 C </line>
<line>ATOM 105 CA ALA A 15 19.905 -5.726 30.407 1.00 8.74 C </line>
<line>ATOM 110 CA ILE A 16 20.395 -7.007 26.845 1.00 7.94 C </line>
<line>ATOM 118 CA GLU A 17 18.200 -10.067 27.393 1.00 5.21 C </line>
<line>ATOM 127 CA LYS A 18 15.426 -7.876 28.787 1.00 9.99 C </line>
<line>ATOM 136 CA ALA A 19 15.681 -5.197 26.041 1.00 7.07 C </line>
<line>ATOM 141 CA LYS A 20 15.441 -7.873 23.358 1.00 2.69 C </line>
<line>ATOM 150 CA ARG A 21 12.106 -9.096 24.741 1.00 7.56 C </line>
<line>ATOM 161 CA LYS A 22 10.794 -5.527 25.107 1.00 4.60 C </line>
</atom-coordinate>
<distance-map>
<line> LYS ARG LYS ALA LYS GLU ILE ALA LYS GLN TYR ASP PRO </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>PRO CA 18.50 17.10 15.54 14.22 12.31 10.64 9.95 8.52 6.19 5.09 5.51 3.79 </line>
<line>ASP CA 16.36 15.67 14.24 12.10 10.46 9.88 8.64 6.02 5.09 5.36 3.80 </line>
<line>TYR CA 15.26 14.64 12.39 10.47 9.93 8.80 6.32 4.95 5.51 3.81 </line>
<line>GLN CA 14.49 12.95 10.83 9.97 8.73 6.38 5.16 5.35 3.81 </line>
<line>LYS CA 12.44 11.04 9.94 8.56 6.15 5.04 5.35 3.81 </line>
<line>ALA CA 10.54 10.21 8.62 6.10 5.23 5.55 3.82 </line>
<line>ILE CA 9.87 8.80 6.12 5.11 5.41 3.81 </line>
<line>GLU CA 8.98 6.72 5.36 5.65 3.80 </line>
<line>LYS CA 6.37 5.37 5.43 3.84 </line>
<line>ALA CA 4.99 5.45 3.80 </line>
<line>LYS CA 5.49 3.81 </line>
<line>ARG CA 3.82 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>PRO CA 144</line>
<line>ASP CA 170</line>
<line>TYR CA 261</line>
<line>GLN CA 253</line>
<line>LYS CA 224</line>
<line>ALA CA 285</line>
<line>ILE CA 362</line>
<line>GLU CA 302</line>
<line>LYS CA 280</line>
<line>ALA CA 371</line>
<line>LYS CA 382</line>
<line>ARG CA 277</line>
<line>LYS CA 308</line>
</n14>
</entryChain>
<parallel>
<x>-2.1419999599456787</x>
<y>60.71799850463867</y>
<z>-21.354999542236328</z>
</parallel>
<rotation>
<x>0.32600000500679016</x>
<y>0.9449999928474426</y>
<z>-0.017000000923871994</z>
<x>0.7720000147819519</x>
<y>-0.25600001215934753</y>
<z>0.5820000171661377</z>
<x>0.5450000166893005</x>
<y>-0.2029999941587448</y>
<z>-0.8130000233650208</z>
</rotation>
<rmsd>2.5404090881347656</rmsd>
<dmax>3.6460940837860107</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>5CCP</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>5CCPA</entryIDChain>
<sequence>RTFFQ-RLNMN</sequence>
<secondary-structure>HHHH - </secondary-structure>
<atom-coordinate>
<line>ATOM 1186 CA ARG A 155 -11.338 70.756 18.011 1.00 23.62 C </line>
<line>ATOM 1197 CA THR A 156 -10.039 72.970 20.814 1.00 27.53 C </line>
<line>ATOM 1204 CA PHE A 157 -7.474 70.485 21.991 1.00 18.33 C </line>
<line>ATOM 1215 CA PHE A 158 -6.122 69.867 18.492 1.00 23.52 C </line>
<line>ATOM 1226 CA GLN A 159 -5.813 73.456 17.802 1.00 29.13 C </line>
<line>ATOM 1235 CA ARG A 160 -3.050 73.590 20.394 1.00 16.59 C </line>
<line>ATOM 1246 CA LEU A 161 -1.044 71.278 18.132 1.00 29.66 C </line>
<line>ATOM 1254 CA ASN A 162 -1.899 73.308 15.131 1.00 13.72 C </line>
<line>ATOM 1262 CA MET A 163 -4.127 70.745 13.514 1.00 7.10 C </line>
<line>ATOM 1270 CA ASN A 164 -7.282 71.689 11.640 1.00 17.89 C </line>
</atom-coordinate>
<distance-map>
<line> ASN MET ASN LEU ARG GLN PHE PHE THR ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 7.61 8.50 10.19 10.31 9.08 6.15 5.31 5.55 3.80 </line>
<line>THR CA 9.66 9.65 9.93 9.54 7.03 5.21 5.51 3.76 </line>
<line>PHE CA 10.42 9.12 9.28 7.54 5.64 5.40 3.80 </line>
<line>PHE CA 7.18 5.43 6.40 5.28 5.19 3.67 </line>
<line>GLN CA 6.58 5.35 4.74 5.25 3.79 </line>
<line>ARG CA 9.91 7.52 5.39 3.81 </line>
<line>LEU CA 9.01 5.58 3.72 </line>
<line>ASN CA 6.62 3.76 </line>
<line>MET CA 3.79 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>ARG CA 337</line>
<line>THR CA 285</line>
<line>PHE CA 347</line>
<line>PHE CA 395</line>
<line>GLN CA 306</line>
<line>ARG CA 318</line>
<line>LEU CA 386</line>
<line>ASN CA 327</line>
<line>MET CA 366</line>
<line>ASN CA 316</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1APX</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1APXA</entryIDChain>
<sequence>RDVFGKAMGLS</sequence>
<secondary-structure>IIIIIII </secondary-structure>
<atom-coordinate>
<line>ATOM 1077 CA ARG A 142 31.674 -2.552 -4.696 1.00 9.93 C </line>
<line>ATOM 1088 CA ASP A 143 33.225 0.750 -3.626 1.00 12.62 C </line>
<line>ATOM 1096 CA VAL A 144 30.832 1.232 -0.705 1.00 8.90 C </line>
<line>ATOM 1103 CA PHE A 145 30.285 -2.330 0.551 1.00 4.68 C </line>
<line>ATOM 1114 CA GLY A 146 33.603 -3.690 -0.715 1.00 3.72 C </line>
<line>ATOM 1118 CA LYS A 147 36.292 -1.013 -0.531 1.00 13.66 C </line>
<line>ATOM 1127 CA ALA A 148 34.950 1.005 2.420 1.00 7.96 C </line>
<line>ATOM 1132 CA MET A 149 33.089 -1.587 4.511 1.00 5.37 C </line>
<line>ATOM 1140 CA GLY A 150 35.152 -4.644 3.603 1.00 2.00 C </line>
<line>ATOM 1144 CA LEU A 151 32.194 -6.892 2.751 1.00 6.11 C </line>
<line>ATOM 1152 CA SER A 152 32.081 -9.569 0.037 1.00 7.28 C </line>
</atom-coordinate>
<distance-map>
<line> SER LEU GLY MET ALA LYS GLY PHE VAL ASP ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 8.47 8.64 9.24 9.36 8.60 6.41 4.57 5.43 5.56 3.80 </line>
<line>ASP CA 11.01 10.01 9.22 8.47 6.29 4.70 5.32 5.96 3.81 </line>
<line>VAL CA 10.90 8.93 8.47 6.34 5.17 5.91 5.65 3.82 </line>
<line>PHE CA 7.48 5.41 6.19 4.91 6.03 6.24 3.80 </line>
<line>GLY CA 6.12 4.92 4.69 5.66 5.80 3.80 </line>
<line>LYS CA 9.55 7.88 5.62 6.00 3.82 </line>
<line>ALA CA 11.21 8.37 5.78 3.81 </line>
<line>MET CA 9.21 5.66 3.80 </line>
<line>GLY CA 6.81 3.81 </line>
<line>LEU CA 3.81 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>ARG CA 315</line>
<line>ASP CA 275</line>
<line>VAL CA 362</line>
<line>PHE CA 404</line>
<line>GLY CA 311</line>
<line>LYS CA 256</line>
<line>ALA CA 309</line>
<line>MET CA 378</line>
<line>GLY CA 330</line>
<line>LEU CA 358</line>
<line>SER CA 298</line>
</n14>
</entryChain>
<parallel>
<x>-38.69900131225586</x>
<y>73.44100189208984</y>
<z>18.67799949645996</z>
</parallel>
<rotation>
<x>0.164000004529953</x>
<y>0.9819999933242798</y>
<z>-0.0949999988079071</z>
<x>0.03700000047683716</x>
<y>0.09099999815225601</y>
<z>0.9950000047683716</z>
<x>0.9860000014305115</x>
<y>-0.16599999368190765</y>
<z>-0.02199999988079071</z>
</rotation>
<rmsd>0.8771799802780151</rmsd>
<dmax>1.6928390264511108</dmax>
</indel>