NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1APXA-7CCPA
confEVID 1APXA-7CCPA
pdbIDA 1APX
pdbIDB 7CCP
pdbChainA A
pdbChainB A
identity 0.321200013160706
indelSize 3
alignment <alignment>
<seq1>----GKSYPTVSPDYQKAIEKAKRKLRGFIAEKK-------CAPLILRLAWHSAGTFDSKTKTGGPF-GTIKHQAELAHGANNGLDIAVRLLEPIKEQFPIVSYADFYQLAGVVAVEITGGPEVPFHPGREDKP--EPPPEGRLPDATKGSDHLRDVFGKAMGLSDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLIFDNSYFTELLT---------------GEKDGLLQLPSDKALLTDSVFRPLVEKYAADEDVFFADYAEAHLKLSELGFAEA-----------------</seq1>
<seq2>LVHVASVEKGRSYEDFQ---KVYNAIALKLREDDEYDNYIGYGPVLVLLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ-RLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTLEEQGL</seq2>
<ss_1>---- HHHHHHHHHHHHHHHHHHHH ------- HHHHHHHHHHHGGG - GGG HHHH GGG HHHHHHHHHHGGG HHHHHHHHHHHHHHH -- HHHHIIIIIII HHHHHHHGGGGG EEE HHHHHHH --------------- HHHH HHHHHHHHH HHHHHHHHHHHHHHHH -----------------</ss_1>
<ss_2> HHHHH---HHHHHHHHHHHH HHHHHHHHHHHH GGG HHHH HHHHHHHHHHH HHHHHHHHHHHHHHH HHHHHHHH - HHHHHHGGGGGG EEE HHHH HHHHHHHH EEEEEEE EEEEEE EEE HHHHHHHH HHHHHHHHHHHH HHHHHHHHHHHHHHHHH HHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1APX</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1APXA</entryIDChain>
<sequence>REDKP--EPPPE</sequence>
<secondary-structure> -- </secondary-structure>
<atom-coordinate>
<line>ATOM 899 CA ARG A 119 29.975 -1.578 21.450 1.00 10.09 C </line>
<line>ATOM 910 CA GLU A 120 30.770 1.822 22.846 1.00 15.56 C </line>
<line>ATOM 919 CA ASP A 121 29.049 5.090 21.968 1.00 11.52 C </line>
<line>ATOM 927 CA LYS A 122 31.384 7.434 20.141 1.00 12.38 C </line>
<line>ATOM 936 CA PRO A 123 30.942 11.241 20.498 1.00 16.71 C </line>
<line>ATOM 943 CA GLU A 124 31.362 12.434 16.906 1.00 21.80 C </line>
<line>ATOM 952 CA PRO A 125 29.340 11.330 13.864 1.00 15.36 C </line>
<line>ATOM 959 CA PRO A 126 31.091 10.310 10.635 1.00 13.11 C </line>
<line>ATOM 966 CA PRO A 127 31.020 12.667 7.611 1.00 10.62 C </line>
<line>ATOM 973 CA GLU A 128 28.239 12.485 5.006 1.00 11.07 C </line>
</atom-coordinate>
<distance-map>
<line> GLU PRO PRO PRO GLU PRO LYS ASP GLU ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 21.71 19.89 16.11 14.99 14.80 12.89 9.21 6.75 3.76 </line>
<line>GLU CA 20.94 18.70 14.87 13.16 12.18 9.71 6.26 3.80 </line>
<line>ASP CA 18.52 16.35 12.64 10.23 9.21 6.60 3.78 </line>
<line>LYS CA 16.26 13.58 9.94 7.67 5.96 3.85 </line>
<line>PRO CA 15.78 12.97 9.91 6.83 3.81 </line>
<line>GLU CA 12.30 9.30 6.63 3.82 </line>
<line>PRO CA 9.00 6.61 3.81 </line>
<line>PRO CA 6.67 3.83 </line>
<line>PRO CA 3.81 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>ARG CA 397</line>
<line>GLU CA 334</line>
<line>ASP CA 320</line>
<line>LYS CA 280</line>
<line>PRO CA 201</line>
<line>GLU CA 226</line>
<line>PRO CA 306</line>
<line>PRO CA 323</line>
<line>PRO CA 267</line>
<line>GLU CA 263</line>
</n14>
</entryChain>
<entryChain>
<pdbID>7CCP</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>7CCPA</entryIDChain>
<sequence>RVDTPEDTTPDN</sequence>
<secondary-structure> </secondary-structure>
<atom-coordinate>
<line>ATOM 998 CA ARG A 130 15.803 65.418 17.311 1.00 25.81 C </line>
<line>ATOM 1009 CA VAL A 131 18.229 66.041 20.177 1.00 28.87 C </line>
<line>ATOM 1016 CA ASP A 132 17.873 64.584 23.664 1.00 36.32 C </line>
<line>ATOM 1024 CA THR A 133 17.219 67.435 26.099 1.00 36.53 C </line>
<line>ATOM 1031 CA PRO A 134 17.680 67.636 29.853 1.00 41.68 C </line>
<line>ATOM 1038 CA GLU A 135 15.179 66.223 32.279 1.00 49.63 C </line>
<line>ATOM 1047 CA ASP A 136 14.102 69.761 33.147 1.00 49.37 C </line>
<line>ATOM 1055 CA THR A 137 12.639 70.247 29.691 1.00 39.16 C </line>
<line>ATOM 1062 CA THR A 138 10.211 67.444 30.533 1.00 39.09 C </line>
<line>ATOM 1069 CA PRO A 139 6.646 68.745 30.095 1.00 42.30 C </line>
<line>ATOM 1076 CA ASP A 140 4.224 68.516 33.006 1.00 44.41 C </line>
<line>ATOM 1084 CA ASN A 141 1.532 65.846 32.872 1.00 40.28 C </line>
</atom-coordinate>
<distance-map>
<line> ASN ASP PRO THR THR ASP GLU PRO THR ASP VAL ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 21.12 19.75 16.07 14.50 13.66 16.51 15.00 12.87 9.13 6.73 3.81 </line>
<line>VAL CA 20.98 19.15 15.49 13.17 11.81 14.11 12.48 9.82 6.17 3.80 </line>
<line>ASP CA 18.80 17.00 13.59 10.68 9.79 11.44 9.17 6.90 3.81 </line>
<line>THR CA 17.16 14.76 11.38 8.29 6.46 8.05 6.62 3.79 </line>
<line>PRO CA 16.53 13.85 11.09 7.50 5.68 5.31 3.76 </line>
<line>GLU CA 13.67 11.22 9.16 5.41 5.42 3.80 </line>
<line>ASP CA 13.17 9.96 8.12 5.23 3.78 </line>
<line>THR CA 12.36 9.21 6.19 3.80 </line>
<line>THR CA 9.13 6.57 3.82 </line>
<line>PRO CA 6.50 3.79 </line>
<line>ASP CA 3.79 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>ARG CA 454</line>
<line>VAL CA 384</line>
<line>ASP CA 340</line>
<line>THR CA 294</line>
<line>PRO CA 208</line>
<line>GLU CA 222</line>
<line>ASP CA 193</line>
<line>THR CA 287</line>
<line>THR CA 340</line>
<line>PRO CA 355</line>
<line>ASP CA 280</line>
<line>ASN CA 282</line>
</n14>
</entryChain>
<parallel>
<x>15.95199966430664</x>
<y>-59.93299865722656</y>
<z>-7.388999938964844</z>
</parallel>
<rotation>
<x>0.0860000029206276</x>
<y>0.11699999868869781</y>
<z>0.9890000224113464</z>
<x>0.9779999852180481</x>
<y>0.17800000309944153</y>
<z>-0.10599999874830246</z>
<x>-0.18799999356269836</x>
<y>0.9769999980926514</y>
<z>-0.0989999994635582</z>
</rotation>
<rmsd>0.9828169941902161</rmsd>
<dmax>1.952254056930542</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>7CCP</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>7CCPA</entryIDChain>
<sequence>YEDFQ---KVYNA</sequence>
<secondary-structure>HHHHH---HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 90 CA TYR A 16 20.034 57.400 5.242 1.00 32.52 C </line>
<line>ATOM 102 CA GLU A 17 21.457 53.869 5.264 1.00 35.34 C </line>
<line>ATOM 111 CA ASP A 18 22.154 54.175 9.017 1.00 31.27 C </line>
<line>ATOM 119 CA PHE A 19 18.483 54.998 9.657 1.00 25.04 C </line>
<line>ATOM 130 CA GLN A 20 17.224 52.302 7.286 1.00 26.00 C </line>
<line>ATOM 139 CA LYS A 21 19.085 49.839 9.529 1.00 26.88 C </line>
<line>ATOM 148 CA VAL A 22 17.330 51.112 12.667 1.00 19.73 C </line>
<line>ATOM 155 CA TYR A 23 14.018 50.758 10.787 1.00 19.72 C </line>
<line>ATOM 167 CA ASN A 24 14.779 47.196 9.651 1.00 18.64 C </line>
<line>ATOM 175 CA ALA A 25 15.738 46.309 13.256 1.00 20.31 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ASN TYR VAL LYS GLN PHE ASP GLU TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 14.34 12.30 10.54 10.10 8.74 6.17 5.26 5.40 3.81 </line>
<line>GLU CA 12.40 10.41 9.77 8.91 6.33 4.95 5.42 3.83 </line>
<line>ASP CA 11.00 10.17 9.00 6.78 5.34 5.55 3.82 </line>
<line>PHE CA 9.80 8.64 6.26 5.05 5.20 3.80 </line>
<line>GLN CA 8.59 6.14 4.99 5.51 3.82 </line>
<line>LYS CA 6.13 5.05 5.30 3.81 </line>
<line>VAL CA 5.09 5.56 3.82 </line>
<line>TYR CA 5.37 3.82 </line>
<line>ASN CA 3.83 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>TYR CA 302</line>
<line>GLU CA 277</line>
<line>ASP CA 314</line>
<line>PHE CA 427</line>
<line>GLN CA 403</line>
<line>LYS CA 377</line>
<line>VAL CA 446</line>
<line>TYR CA 517</line>
<line>ASN CA 399</line>
<line>ALA CA 397</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1APX</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1APXA</entryIDChain>
<sequence>PDYQKAIEKAKRK</sequence>
<secondary-structure>HHHHHHHHHHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 60 CA PRO A 10 26.193 -9.863 34.407 1.00 10.06 C </line>
<line>ATOM 67 CA ASP A 11 23.987 -6.792 34.700 1.00 9.81 C </line>
<line>ATOM 75 CA TYR A 12 24.796 -5.634 31.171 1.00 9.83 C </line>
<line>ATOM 87 CA GLN A 13 23.999 -9.125 29.875 1.00 7.90 C </line>
<line>ATOM 96 CA LYS A 14 20.663 -9.231 31.708 1.00 10.51 C </line>
<line>ATOM 105 CA ALA A 15 19.905 -5.726 30.407 1.00 8.74 C </line>
<line>ATOM 110 CA ILE A 16 20.395 -7.007 26.845 1.00 7.94 C </line>
<line>ATOM 118 CA GLU A 17 18.200 -10.067 27.393 1.00 5.21 C </line>
<line>ATOM 127 CA LYS A 18 15.426 -7.876 28.787 1.00 9.99 C </line>
<line>ATOM 136 CA ALA A 19 15.681 -5.197 26.041 1.00 7.07 C </line>
<line>ATOM 141 CA LYS A 20 15.441 -7.873 23.358 1.00 2.69 C </line>
<line>ATOM 150 CA ARG A 21 12.106 -9.096 24.741 1.00 7.56 C </line>
<line>ATOM 161 CA LYS A 22 10.794 -5.527 25.107 1.00 4.60 C </line>
</atom-coordinate>
<distance-map>
<line> LYS ARG LYS ALA LYS GLU ILE ALA LYS GLN TYR ASP PRO </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>PRO CA 18.50 17.10 15.54 14.22 12.31 10.64 9.95 8.52 6.19 5.09 5.51 3.79 </line>
<line>ASP CA 16.36 15.67 14.24 12.10 10.46 9.88 8.64 6.02 5.09 5.36 3.80 </line>
<line>TYR CA 15.26 14.64 12.39 10.47 9.93 8.80 6.32 4.95 5.51 3.81 </line>
<line>GLN CA 14.49 12.95 10.83 9.97 8.73 6.38 5.16 5.35 3.81 </line>
<line>LYS CA 12.44 11.04 9.94 8.56 6.15 5.04 5.35 3.81 </line>
<line>ALA CA 10.54 10.21 8.62 6.10 5.23 5.55 3.82 </line>
<line>ILE CA 9.87 8.80 6.12 5.11 5.41 3.81 </line>
<line>GLU CA 8.98 6.72 5.36 5.65 3.80 </line>
<line>LYS CA 6.37 5.37 5.43 3.84 </line>
<line>ALA CA 4.99 5.45 3.80 </line>
<line>LYS CA 5.49 3.81 </line>
<line>ARG CA 3.82 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>PRO CA 144</line>
<line>ASP CA 170</line>
<line>TYR CA 261</line>
<line>GLN CA 253</line>
<line>LYS CA 224</line>
<line>ALA CA 285</line>
<line>ILE CA 362</line>
<line>GLU CA 302</line>
<line>LYS CA 280</line>
<line>ALA CA 371</line>
<line>LYS CA 382</line>
<line>ARG CA 277</line>
<line>LYS CA 308</line>
</n14>
</entryChain>
<parallel>
<x>-2.049999952316284</x>
<y>60.75600051879883</y>
<z>-21.325000762939453</z>
</parallel>
<rotation>
<x>0.328000009059906</x>
<y>0.9440000057220459</y>
<z>-0.017000000923871994</z>
<x>0.7730000019073486</x>
<y>-0.257999986410141</y>
<z>0.5799999833106995</z>
<x>0.5429999828338623</x>
<y>-0.2029999941587448</y>
<z>-0.8140000104904175</z>
</rotation>
<rmsd>2.536334991455078</rmsd>
<dmax>3.6459429264068604</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>7CCP</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>7CCPA</entryIDChain>
<sequence>RTFFQ-RLNMN</sequence>
<secondary-structure>HHHH - </secondary-structure>
<atom-coordinate>
<line>ATOM 1188 CA ARG A 155 -11.317 70.794 17.972 1.00 25.70 C </line>
<line>ATOM 1199 CA THR A 156 -10.099 73.066 20.746 1.00 28.12 C </line>
<line>ATOM 1206 CA PHE A 157 -7.510 70.552 21.924 1.00 25.19 C </line>
<line>ATOM 1217 CA PHE A 158 -6.083 69.862 18.461 1.00 26.11 C </line>
<line>ATOM 1228 CA GLN A 159 -5.714 73.570 17.889 1.00 27.46 C </line>
<line>ATOM 1237 CA ARG A 160 -2.970 73.606 20.506 1.00 24.70 C </line>
<line>ATOM 1248 CA LEU A 161 -1.100 71.291 18.157 1.00 24.69 C </line>
<line>ATOM 1256 CA ASN A 162 -1.918 73.356 15.081 1.00 27.14 C </line>
<line>ATOM 1264 CA MET A 163 -4.209 70.707 13.608 1.00 20.77 C </line>
<line>ATOM 1272 CA ASN A 164 -7.286 71.615 11.573 1.00 23.67 C </line>
</atom-coordinate>
<distance-map>
<line> ASN MET ASN LEU ARG GLN PHE PHE THR ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 7.61 8.34 10.16 10.23 9.17 6.25 5.34 5.49 3.79 </line>
<line>THR CA 9.70 9.55 9.96 9.53 7.15 5.26 5.62 3.80 </line>
<line>PHE CA 10.41 8.95 9.27 7.47 5.65 5.35 3.81 </line>
<line>PHE CA 7.21 5.27 6.40 5.19 5.28 3.77 </line>
<line>GLN CA 6.80 5.37 4.73 5.15 3.79 </line>
<line>ARG CA 10.12 7.58 5.53 3.79 </line>
<line>LEU CA 9.04 5.54 3.79 </line>
<line>ASN CA 6.64 3.80 </line>
<line>MET CA 3.80 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>ARG CA 335</line>
<line>THR CA 285</line>
<line>PHE CA 348</line>
<line>PHE CA 396</line>
<line>GLN CA 301</line>
<line>ARG CA 320</line>
<line>LEU CA 387</line>
<line>ASN CA 325</line>
<line>MET CA 368</line>
<line>ASN CA 318</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1APX</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1APXA</entryIDChain>
<sequence>RDVFGKAMGLS</sequence>
<secondary-structure>IIIIIII </secondary-structure>
<atom-coordinate>
<line>ATOM 1077 CA ARG A 142 31.674 -2.552 -4.696 1.00 9.93 C </line>
<line>ATOM 1088 CA ASP A 143 33.225 0.750 -3.626 1.00 12.62 C </line>
<line>ATOM 1096 CA VAL A 144 30.832 1.232 -0.705 1.00 8.90 C </line>
<line>ATOM 1103 CA PHE A 145 30.285 -2.330 0.551 1.00 4.68 C </line>
<line>ATOM 1114 CA GLY A 146 33.603 -3.690 -0.715 1.00 3.72 C </line>
<line>ATOM 1118 CA LYS A 147 36.292 -1.013 -0.531 1.00 13.66 C </line>
<line>ATOM 1127 CA ALA A 148 34.950 1.005 2.420 1.00 7.96 C </line>
<line>ATOM 1132 CA MET A 149 33.089 -1.587 4.511 1.00 5.37 C </line>
<line>ATOM 1140 CA GLY A 150 35.152 -4.644 3.603 1.00 2.00 C </line>
<line>ATOM 1144 CA LEU A 151 32.194 -6.892 2.751 1.00 6.11 C </line>
<line>ATOM 1152 CA SER A 152 32.081 -9.569 0.037 1.00 7.28 C </line>
</atom-coordinate>
<distance-map>
<line> SER LEU GLY MET ALA LYS GLY PHE VAL ASP ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 8.47 8.64 9.24 9.36 8.60 6.41 4.57 5.43 5.56 3.80 </line>
<line>ASP CA 11.01 10.01 9.22 8.47 6.29 4.70 5.32 5.96 3.81 </line>
<line>VAL CA 10.90 8.93 8.47 6.34 5.17 5.91 5.65 3.82 </line>
<line>PHE CA 7.48 5.41 6.19 4.91 6.03 6.24 3.80 </line>
<line>GLY CA 6.12 4.92 4.69 5.66 5.80 3.80 </line>
<line>LYS CA 9.55 7.88 5.62 6.00 3.82 </line>
<line>ALA CA 11.21 8.37 5.78 3.81 </line>
<line>MET CA 9.21 5.66 3.80 </line>
<line>GLY CA 6.81 3.81 </line>
<line>LEU CA 3.81 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>ARG CA 315</line>
<line>ASP CA 275</line>
<line>VAL CA 362</line>
<line>PHE CA 404</line>
<line>GLY CA 311</line>
<line>LYS CA 256</line>
<line>ALA CA 309</line>
<line>MET CA 378</line>
<line>GLY CA 330</line>
<line>LEU CA 358</line>
<line>SER CA 298</line>
</n14>
</entryChain>
<parallel>
<x>-38.689998626708984</x>
<y>73.48899841308594</y>
<z>18.673999786376953</z>
</parallel>
<rotation>
<x>0.17000000178813934</x>
<y>0.9819999933242798</y>
<z>-0.08699999749660492</z>
<x>0.03099999949336052</x>
<y>0.08299999684095383</y>
<z>0.9959999918937683</z>
<x>0.9850000143051147</x>
<y>-0.1720000058412552</y>
<z>-0.01600000075995922</z>
</rotation>
<rmsd>0.9049710035324097</rmsd>
<dmax>1.8152439594268799</dmax>
</indel>